RchiOBHm_Chr2g0144311
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Forward (+)
61924018 .. 61925187
1170 bp
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UTR
Exon/CDS
Intron
PRQ51426

Sequence Viewer

Length: 711 bp
ATGAAAACTCTAGAAATACCTGAGCATAAGGTCCCTTATTTCATTAGCAACTATTATATGTTTAACCCCAAAGTATTGAGCAATGTACCTCACAACACTTTGATTCTGAGAGCGCAACAGGTGCCAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTTCAGATCTGGCTGCACGTCCAGATATTCTGACTTATAGTTTGGAGAAGCAAATCATACCTAGGTGTTCAGTCATCAGATTTCTCCAGTTAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGGCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

236

Amino Acids

27.26

Weight (kDa)

8.29

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 57 - 200 2.3e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccI GTMKAC 1 cut(s) 239
AcsI RAATTY 2 cut(s) 308, 680
AcuI CTGAAG 3 cut(s) 354, 367, 429
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 535
AgsI TTSAA 1 cut(s) 424
AhdI GACNNNNNGTC 1 cut(s) 235
AjiI CACGTC 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
AluBI AGCT 3 cut(s) 257, 381, 404
AluI AGCT 3 cut(s) 257, 381, 404
Alw21I GWGCWC 1 cut(s) 582
Alw44I GTGCAC 1 cut(s) 578
ApaLI GTGCAC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 284, 455
ApoI RAATTY 2 cut(s) 308, 680
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
Asp700I GAANNNNTTC 1 cut(s) 596
AspA2I CCTAGG 1 cut(s) 503
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 31
AvrII CCTAGG 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 582
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 2 cut(s) 296, 442
BccI CCATC 1 cut(s) 298
BclI TGATCA 1 cut(s) 615
BfaI CTAG 3 cut(s) 11, 504, 674
BglII AGATCT 1 cut(s) 448
BisI GCNGC 2 cut(s) 285, 456
BlnI CCTAGG 1 cut(s) 503
BlsI GCNGC 2 cut(s) 286, 457
Bme18I GGWCC 1 cut(s) 31
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 33, 123
BmsI GCATC 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 512
Bpu10I CCTNAGC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 503
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 12, 98, 174
BseNI ACTGG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 2 cut(s) 296, 442
BsgI GTGCAG 1 cut(s) 441
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 582
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 2 cut(s) 448, 615
BspCNI CTCAG 3 cut(s) 13, 99, 175
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 33, 123
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 2 cut(s) 448, 615
BssT1I CCWWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 165, 440
BstDEI CTNAG 3 cut(s) 21, 107, 183
BstEII GGTNACC 1 cut(s) 274
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 451, 618
BstMBI GATC 2 cut(s) 448, 615
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 582
BstV1I GCAGC 2 cut(s) 296, 442
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BtrI CACGTC 1 cut(s) 461
BtsIMutI CAGTG 2 cut(s) 167, 391
Cac8I GCNNGC 2 cut(s) 165, 440
CciI TCATGA 1 cut(s) 249
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 31
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 86
CviAII CATG 3 cut(s) 220, 250, 370
CviJI RGCY 6 cut(s) 257, 381, 404, 442, 455, 540
CviKI_1 RGCY 6 cut(s) 257, 381, 404, 442, 455, 540
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 3 cut(s) 21, 107, 183
DpnI GATC 2 cut(s) 450, 617
DpnII GATC 2 cut(s) 448, 615
DriI GACNNNNNGTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 3 cut(s) 354, 367, 429
Eco91I GGTNACC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 503
FaeI CATG 3 cut(s) 223, 253, 373
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FaqI GGGAC 1 cut(s) 17
FatI CATG 3 cut(s) 219, 249, 369
FbaI TGATCA 1 cut(s) 615
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 285, 456
Fsp4HI GCNGC 2 cut(s) 285, 456
FspBI CTAG 3 cut(s) 11, 504, 674
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 285, 456
GsuI CTGGAG 1 cut(s) 512
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 115
Hin1II CATG 3 cut(s) 223, 253, 373
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 4 cut(s) 103, 179, 364, 693
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 240, 580
Hpy188I TCNGA 5 cut(s) 108, 184, 448, 474, 521
Hpy188III TCNNGA 4 cut(s) 11, 205, 250, 464
Hpy8I GTNNAC 2 cut(s) 240, 580
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 4 cut(s) 181, 202, 243, 453
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 167, 284, 458, 580, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 3 cut(s) 21, 107, 183
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 3 cut(s) 223, 253, 373
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 2 cut(s) 448, 615
LpnPI CCDG 9 cut(s) 33, 104, 138, 437, 452, 477, 542, 644, 651
Lsp1109I GCAGC 2 cut(s) 296, 442
LweI GCATC 1 cut(s) 660
MaeI CTAG 3 cut(s) 11, 504, 674
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 450, 617
MboI GATC 2 cut(s) 448, 615
MboII GAAGA 4 cut(s) 347, 403, 566, 638
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 5 cut(s) 308, 543, 567, 641, 680
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 2 cut(s) 99, 150
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 4 cut(s) 63, 192, 533, 542
MslI CAYNNNNRTG 2 cut(s) 218, 374
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 2 cut(s) 448, 615
NlaIII CATG 3 cut(s) 223, 253, 373
NlaIV GGNNCC 2 cut(s) 33, 123
NmuCI GTSAC 1 cut(s) 274
PagI TCATGA 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 3 cut(s) 103, 364, 693
PkrI GCNGC 2 cut(s) 286, 457
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 31
PspEI GGTNACC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 33, 123
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 2 cut(s) 218, 374
SaqAI TTAA 4 cut(s) 63, 192, 533, 542
SatI GCNGC 2 cut(s) 285, 456
Sau3AI GATC 2 cut(s) 448, 615
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 1 cut(s) 660
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 218, 374
Sse9I AATT 5 cut(s) 308, 543, 567, 641, 680
SspI AATATT 1 cut(s) 397
SspMI CTAG 3 cut(s) 11, 504, 674
StyI CCWWGG 1 cut(s) 503
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 204, 696
TasI AATT 5 cut(s) 308, 543, 567, 641, 680
TfiI GAWTC 3 cut(s) 103, 364, 693
Tru1I TTAA 4 cut(s) 63, 192, 533, 542
Tru9I TTAA 4 cut(s) 63, 192, 533, 542
TscAI CASTG 2 cut(s) 174, 391
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 284, 455
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 5 cut(s) 17, 31, 238, 266, 639
TspRI CASTG 2 cut(s) 174, 391
VneI GTGCAC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 308, 680
XbaI TCTAGA 1 cut(s) 10
XmaJI CCTAGG 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 3 cut(s) 11, 504, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.