Rroxscaffold_2G00101380
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000263
Physical Location & Seq
Reverse (-)
23354009 .. 23358577
4569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101380.1

Sequence Viewer

Length: 897 bp
ATGGACTCAATGGTACCCACGTCTCCGAAATGGTCAAGAAAAGCCCAAGGCTGCTCTTATTCAAAGCTGAGAAGACCCTTCTGCCCAAGCTTGAGTTTTTTCAGTTCTATTGGCATATTAGGCACCGCCCTTGGTAGACTCCTTTGTATGAACCCAAGAATCTTGATATTAAGCTTAGAGACAAGTCTCAGACCTTGTTATGACATCACCAAAACTCTACGTATCCCCGATGAAAAGCTCGCTTATTTCTTTAGTGACTTCAGGCGGACTAGTTTCAAAAGACTCTGCATTGTTGCTCGCAATGTTCAAGTTCTGAGAGCAGATGGTGTGCCAGAATCCTCATTTCGTCTGTGGGAACCCTATAGTTTTAATGCACTGTCCTTTGACTCTGGTAAGGTCAAAGAAAATTTTGAGAAGGTCATCAGCATGGGATTCCACCCTTCATCTGCCACATTCTTGAGAGCACTGTATGTGATATCAGTGACGGATGCATCAAAATGGGAACAGAAGATGGAATTTTATAGAAAGTGGGGTCTGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAGTCCTTTGTTTATGTCCTTCAGTGAGAAGATTATATCCAGTAAAATGGATTTTTATGTGAATACAATGGGTTGGCAGCCCTCAGATGTGGCTGGATGTCCAGATGTTCTGACCTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGGTTAATCGCAAAGGAAGATGTATCTATAAGTACTATTCTGAAGACAAGCGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCGAGTACCTGAATTGCTGACATCTTACAAGGAAAAATCAGTCTTGCAAAATTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

298

Amino Acids

34.35

Weight (kDa)

9.37

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 126 - 269 1.2e-20 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 13
AccB1I GGYRCC 2 cut(s) 13, 122
AccI GTMKAC 1 cut(s) 136
AciI CCGC 2 cut(s) 126, 265
AcsI RAATTY 3 cut(s) 406, 515, 886
AcuI CTGAAG 4 cut(s) 244, 561, 574, 806
AfaI GTAC 3 cut(s) 15, 778, 843
AfiI CCNNNNNNNGG 1 cut(s) 742
AgsI TTSAA 3 cut(s) 63, 277, 308
AhlI ACTAGT 1 cut(s) 269
AjiI CACGTC 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 4 cut(s) 67, 90, 174, 238
AluI AGCT 4 cut(s) 67, 90, 174, 238
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 3 cut(s) 27, 173, 191
ApeKI GCWGC 2 cut(s) 51, 646
ApoI RAATTY 3 cut(s) 406, 515, 886
ArsI GACNNNNNNTTYG 2 cut(s) 673, 705
Asp700I GAANNNNTTC 1 cut(s) 803
Asp718I GGTACC 1 cut(s) 13
AspA2I CCTAGG 1 cut(s) 710
AsuHPI GGTGA 1 cut(s) 199
AvrII CCTAGG 1 cut(s) 710
BaeI ACNNNNGTAYC 1 cut(s) 38
BanI GGYRCC 2 cut(s) 13, 122
BbsI GAAGAC 2 cut(s) 79, 794
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 38, 658
BccI CCATC 2 cut(s) 317, 505
BciVI GTATCC 1 cut(s) 233
BclI TGATCA 1 cut(s) 822
BcoDI GTCTC 3 cut(s) 27, 173, 191
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 2 cut(s) 270, 711
BfmI CTRYAG 2 cut(s) 361, 685
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 2 cut(s) 52, 647
BlnI CCTAGG 1 cut(s) 710
BlsI GCNGC 2 cut(s) 53, 648
BmcAI AGTACT 1 cut(s) 778
BmgBI CACGTC 1 cut(s) 21
BmiI GGNNCC 3 cut(s) 15, 124, 357
BmsI GCATC 2 cut(s) 478, 500
BpiI GAAGAC 2 cut(s) 79, 794
BpmI CTGGAG 1 cut(s) 719
BpuEI CTTGAG 2 cut(s) 112, 478
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 46, 130, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 742
Bse1I ACTGG 2 cut(s) 609, 736
Bse3DI GCAATG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 46, 130, 710
BseGI GGATG 2 cut(s) 493, 671
BseLI CCNNNNNNNGG 1 cut(s) 742
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 4 cut(s) 59, 202, 305, 666
BseNI ACTGG 2 cut(s) 609, 736
BseXI GCAGC 2 cut(s) 38, 658
BshNI GGYRCC 2 cut(s) 13, 122
BsiHKAI GWGCWC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 742
BsmAI GTCTC 3 cut(s) 27, 173, 191
BsmBI CGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 466
Bsp143I GATC 1 cut(s) 822
BspACI CCGC 2 cut(s) 126, 265
BspCNI CTCAG 4 cut(s) 60, 201, 306, 665
BspLI GGNNCC 3 cut(s) 15, 124, 357
BspT107I GGYRCC 2 cut(s) 13, 122
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 2 cut(s) 609, 736
BssECI CCNNGG 3 cut(s) 46, 130, 710
BssMI GATC 1 cut(s) 822
BssT1I CCWWGG 3 cut(s) 46, 130, 710
Bst4CI ACNGT 2 cut(s) 378, 468
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 240, 298
BstDEI CTNAG 6 cut(s) 68, 175, 188, 314, 652, 894
BstF5I GGATG 2 cut(s) 493, 671
BstKTI GATC 1 cut(s) 825
BstMAI GTCTC 3 cut(s) 27, 173, 191
BstMBI GATC 1 cut(s) 822
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSFI CTRYAG 2 cut(s) 361, 685
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 38, 658
BstV2I GAAGAC 2 cut(s) 79, 794
BstXI CCANNNNNNTGG 1 cut(s) 616
BsuI GTATCC 1 cut(s) 233
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 2 cut(s) 493, 671
BtsIMutI CAGTG 4 cut(s) 374, 464, 486, 598
Cac8I GCNNGC 2 cut(s) 240, 298
Csp6I GTAC 3 cut(s) 14, 777, 842
CviAII CATG 1 cut(s) 427
CviJI RGCY 9 cut(s) 44, 51, 67, 90, 174, 238, 649, 662, 893
CviKI_1 RGCY 9 cut(s) 44, 51, 67, 90, 174, 238, 649, 662, 893
CviQI GTAC 3 cut(s) 14, 777, 842
DdeI CTNAG 6 cut(s) 68, 175, 188, 314, 652, 894
DpnI GATC 1 cut(s) 824
DpnII GATC 1 cut(s) 822
EciI GGCGGA 1 cut(s) 280
Eco105I TACGTA 1 cut(s) 221
Eco130I CCWWGG 3 cut(s) 46, 130, 710
Eco32I GATATC 1 cut(s) 477
Eco57I CTGAAG 4 cut(s) 244, 561, 574, 806
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 3 cut(s) 46, 130, 710
EcoT22I ATGCAT 1 cut(s) 493
ErhI CCWWGG 3 cut(s) 46, 130, 710
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 1 cut(s) 430
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FatI CATG 1 cut(s) 426
FbaI TGATCA 1 cut(s) 822
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 52, 647
FokI GGATG 2 cut(s) 500, 678
Fsp4HI GCNGC 2 cut(s) 52, 647
FspBI CTAG 2 cut(s) 270, 711
GluI GCNGC 2 cut(s) 52, 647
GsuI CTGGAG 1 cut(s) 719
Hin1II CATG 1 cut(s) 430
HindIII AAGCTT 2 cut(s) 88, 172
HinfI GANTC 9 cut(s) 5, 138, 159, 282, 335, 386, 432, 571, 702
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 8 cut(s) 27, 191, 315, 537, 655, 681, 728, 786
Hpy188III TCNNGA 5 cut(s) 36, 163, 457, 671, 833
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 88, 409, 450, 598
HpyCH4III ACNGT 2 cut(s) 378, 468
HpyCH4IV ACGT 2 cut(s) 20, 220
HpyCH4V TGCA 4 cut(s) 288, 374, 491, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 6 cut(s) 68, 175, 188, 314, 652, 894
HpySE526I ACGT 2 cut(s) 20, 220
Hsp92II CATG 1 cut(s) 430
KpnI GGTACC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 822
Kzo9I GATC 1 cut(s) 822
LpnPI CCDG 8 cut(s) 247, 345, 375, 622, 648, 684, 749, 858
Lsp1109I GCAGC 2 cut(s) 38, 658
LweI GCATC 2 cut(s) 478, 500
MaeI CTAG 2 cut(s) 270, 711
MaeII ACGT 2 cut(s) 20, 220
MaeIII GTNAC 2 cut(s) 254, 481
MalI GATC 1 cut(s) 824
MboI GATC 1 cut(s) 822
MboII GAAGA 6 cut(s) 84, 520, 554, 610, 773, 799
MhlI GDGCHC 1 cut(s) 466
MluCI AATT 4 cut(s) 406, 515, 848, 886
MlyI GAGTC 4 cut(s) 132, 276, 380, 580
MnlI CCTC 3 cut(s) 349, 661, 736
Mph1103I ATGCAT 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 803
MseI TTAA 3 cut(s) 170, 369, 749
MslI CAYNNNNRTG 2 cut(s) 425, 496
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 1 cut(s) 822
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 3 cut(s) 15, 124, 357
NmuCI GTSAC 2 cut(s) 254, 481
NsiI ATGCAT 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 4 cut(s) 159, 335, 432, 702
PkrI GCNGC 2 cut(s) 53, 648
PleI GAGTC 4 cut(s) 132, 276, 380, 579
PpsI GAGTC 4 cut(s) 132, 276, 380, 579
Ppu21I YACGTR 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 15, 124, 357
RsaI GTAC 3 cut(s) 15, 778, 843
RsaNI GTAC 3 cut(s) 14, 777, 842
RseI CAYNNNNRTG 2 cut(s) 425, 496
SaqAI TTAA 3 cut(s) 170, 369, 749
SatI GCNGC 2 cut(s) 52, 647
Sau3AI GATC 1 cut(s) 822
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 4 cut(s) 132, 276, 380, 580
SduI GDGCHC 1 cut(s) 466
SfaNI GCATC 2 cut(s) 478, 500
SfcI CTRYAG 2 cut(s) 361, 685
SmiMI CAYNNNNRTG 2 cut(s) 425, 496
SmlI CTYRAG 2 cut(s) 91, 457
SmoI CTYRAG 2 cut(s) 91, 457
SnaBI TACGTA 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 4 cut(s) 406, 515, 848, 886
SsiI CCGC 2 cut(s) 126, 265
SspMI CTAG 2 cut(s) 270, 711
StyI CCWWGG 3 cut(s) 46, 130, 710
TaaI ACNGT 2 cut(s) 378, 468
TaiI ACGT 2 cut(s) 23, 223
TasI AATT 4 cut(s) 406, 515, 848, 886
TatI WGTACW 1 cut(s) 776
TfiI GAWTC 4 cut(s) 159, 335, 432, 702
Tru1I TTAA 3 cut(s) 170, 369, 749
Tru9I TTAA 3 cut(s) 170, 369, 749
TscAI CASTG 4 cut(s) 381, 471, 486, 598
TseFI GTSAC 2 cut(s) 254, 481
TseI GCWGC 2 cut(s) 51, 646
Tsp45I GTSAC 2 cut(s) 254, 481
TspDTI ATGAA 3 cut(s) 164, 246, 432
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 4 cut(s) 381, 471, 486, 598
XapI RAATTY 3 cut(s) 406, 515, 886
XmaJI CCTAGG 1 cut(s) 710
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 2 cut(s) 270, 711
ZrmI AGTACT 1 cut(s) 778
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.