Rh2DG455300
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000263
Physical Location & Seq
Reverse (-)
65831086 .. 65831856
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG455300.1

Sequence Viewer

Length: 771 bp
ATGAGCTTAGAGAATTGTATTAGACCTTGTTGTGATATCATCAAAACTCTAGGTATCCCTTATGGAAAGGTCCCTCGTTTCATTAAGAGATCGCAGTGGTTGTTTAAGGTCAAAGTACTGAGCAATGTTGCTCGCAATGTTTCAGTACTGAGGTCACTAAAAGTGCCAGAATCCACAATCGATTTGTGTAGGCCCCACAATCTTGTTCCAGTGTCCACTGATGCTGATGAGTTTAATGAAAATGTCAACAAGGTCATCAGTATGGGATTTCCTCCTTCAAGCTGTACATTTATGAAAGCACTGTATGTGATTTCTATGATGGATGAATCAAAATTGGCACAGAGGAAGGAGTTTTATAGGAAGTTTGGTTGGACTGAAGATAATATATTGTTGGCATTTAGAAAGAATCCCATTTTTATGTCCATTTCTGAGAAGAATTTTTTGAGTAAAATGGATTTTCTTGTGAACAAAATGGGTTTACAGCCGGCTGATGTGGCTGGATATCCCAGTGTTCTAACTAATAGTTTGGAGAAATGGATCATACCTAGGTGTTCAGTTATCAGAGTTCTGCTGTTGAAGGGCTTAATACGGAAGGGACAATTTTCTTTACTTGGTACCGCGTTAATGGGCAATAAAGACCAGTTCTTGCATAGATTTGTGAACAAGTATGAAGAGCAAGTACCCGAATTATTGAGCATTTTTCAAGGGAAAATTGGTCTTGCAGAACTGGGCTTAGGATTTGAGGAAAGAGATGGAGTGAAACAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

256

Amino Acids

29.18

Weight (kDa)

9.42

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 1 - 215 8.3e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 1 cut(s) 620
AciI CCGC 1 cut(s) 618
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 5 cut(s) 117, 147, 286, 616, 681
AgsI TTSAA 3 cut(s) 279, 577, 704
AluBI AGCT 2 cut(s) 6, 282
AluI AGCT 2 cut(s) 6, 282
AlwI GGATC 1 cut(s) 545
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 436
Asp718I GGTACC 1 cut(s) 614
AspA2I CCTAGG 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 70, 192
AvaII GGWCC 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 545
BanI GGYRCC 1 cut(s) 614
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BccI CCATC 2 cut(s) 313, 746
BciVI GTATCC 1 cut(s) 65
BfaI CTAG 2 cut(s) 50, 546
BfuI GTATCC 1 cut(s) 65
BlnI CCTAGG 1 cut(s) 545
BmcAI AGTACT 2 cut(s) 117, 147
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 192
BmiI GGNNCC 3 cut(s) 72, 194, 616
BmrI ACTGGG 2 cut(s) 501, 737
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 2 cut(s) 501, 737
Bpu10I CCTNAGC 1 cut(s) 733
Bsa29I ATCGAT 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 545
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 4 cut(s) 209, 507, 640, 732
Bse3DI GCAATG 2 cut(s) 130, 142
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 130, 142
BseMII CTCAG 3 cut(s) 110, 140, 420
BseNI ACTGG 4 cut(s) 209, 507, 640, 732
Bsh1236I CGCG 1 cut(s) 620
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 2 cut(s) 56, 609
BsmFI GGGAC 2 cut(s) 56, 609
BsnI GGCC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 2 cut(s) 89, 537
BspACI CCGC 1 cut(s) 618
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 3 cut(s) 111, 141, 421
BspDI ATCGAT 1 cut(s) 180
BspFNI CGCG 1 cut(s) 620
BspLI GGNNCC 3 cut(s) 72, 194, 616
BspPI GGATC 1 cut(s) 545
BspQI GCTCTTC 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 2 cut(s) 130, 142
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 4 cut(s) 209, 507, 640, 732
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 2 cut(s) 89, 537
BssT1I CCWWGG 1 cut(s) 545
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 666
BstAUI TGTACA 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 133, 486
BstDEI CTNAG 5 cut(s) 7, 119, 149, 429, 733
BstF5I GGATG 1 cut(s) 328
BstFNI CGCG 1 cut(s) 620
BstKTI GATC 2 cut(s) 92, 540
BstMBI GATC 2 cut(s) 89, 537
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstUI CGCG 1 cut(s) 620
Bsu15I ATCGAT 1 cut(s) 180
BsuI GTATCC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 193
BsuTUI ATCGAT 1 cut(s) 180
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 5 cut(s) 101, 216, 216, 299, 514
Cac8I GCNNGC 2 cut(s) 133, 486
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 70, 192
ClaI ATCGAT 1 cut(s) 180
Csp6I GTAC 5 cut(s) 116, 146, 285, 615, 680
CviJI RGCY 8 cut(s) 6, 193, 282, 484, 488, 497, 582, 732
CviKI_1 RGCY 8 cut(s) 6, 193, 282, 484, 488, 497, 582, 732
CviQI GTAC 5 cut(s) 116, 146, 285, 615, 680
DdeI CTNAG 5 cut(s) 7, 119, 149, 429, 733
DpnI GATC 2 cut(s) 91, 539
DpnII GATC 2 cut(s) 89, 537
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 545
Eco32I GATATC 2 cut(s) 37, 503
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 2 cut(s) 70, 192
EcoRV GATATC 2 cut(s) 37, 503
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
FaqI GGGAC 2 cut(s) 56, 609
FokI GGATG 1 cut(s) 335
FspBI CTAG 2 cut(s) 50, 546
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 485
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 3 cut(s) 170, 326, 406
HpaII CCGG 1 cut(s) 485
Hpy166II GTNNAC 5 cut(s) 216, 247, 466, 479, 661
Hpy188I TCNGA 2 cut(s) 430, 563
Hpy8I GTNNAC 5 cut(s) 216, 247, 466, 479, 661
HpyAV CCTTC 4 cut(s) 285, 340, 571, 586
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 649, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 5 cut(s) 7, 119, 149, 429, 733
KpnI GGTACC 1 cut(s) 618
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Kzo9I GATC 2 cut(s) 89, 537
LguI GCTCTTC 1 cut(s) 666
LpnPI CCDG 7 cut(s) 180, 222, 483, 498, 520, 653, 713
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 50, 546
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 91, 539
MboI GATC 2 cut(s) 89, 537
MboII GAAGA 3 cut(s) 389, 445, 683
MluCI AATT 6 cut(s) 13, 332, 436, 599, 686, 711
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 5 cut(s) 84, 144, 282, 336, 736
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 5 cut(s) 84, 105, 234, 584, 623
MslI CAYNNNNRTG 2 cut(s) 260, 416
MspI CCGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 620
MwoI GCNNNNNNNGC 1 cut(s) 494
NaeI GCCGGC 1 cut(s) 486
NdeII GATC 2 cut(s) 89, 537
NgoMIV GCCGGC 1 cut(s) 484
NlaIV GGNNCC 3 cut(s) 72, 194, 616
NmuCI GTSAC 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 666
PdiI GCCGGC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 170, 326, 406
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 3 cut(s) 72, 194, 616
PspPI GGNCC 2 cut(s) 70, 192
PspPPI RGGWCCY 1 cut(s) 70
RsaI GTAC 5 cut(s) 117, 147, 286, 616, 681
RsaNI GTAC 5 cut(s) 116, 146, 285, 615, 680
RseI CAYNNNNRTG 2 cut(s) 260, 416
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 5 cut(s) 84, 105, 234, 584, 623
Sau3AI GATC 2 cut(s) 89, 537
Sau96I GGNCC 2 cut(s) 70, 192
ScaI AGTACT 2 cut(s) 117, 147
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 260, 416
Sse9I AATT 6 cut(s) 13, 332, 436, 599, 686, 711
SsiI CCGC 1 cut(s) 618
SspMI CTAG 2 cut(s) 50, 546
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 180
TasI AATT 6 cut(s) 13, 332, 436, 599, 686, 711
TatI WGTACW 3 cut(s) 115, 145, 284
TfiI GAWTC 3 cut(s) 170, 326, 406
Tru1I TTAA 5 cut(s) 84, 105, 234, 584, 623
Tru9I TTAA 5 cut(s) 84, 105, 234, 584, 623
TscAI CASTG 5 cut(s) 101, 216, 223, 306, 514
TseFI GTSAC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 5 cut(s) 70, 252, 308, 339, 684
TspGWI ACGGA 1 cut(s) 604
TspRI CASTG 5 cut(s) 101, 216, 223, 306, 514
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 436
XmaJI CCTAGG 1 cut(s) 545
XspI CTAG 2 cut(s) 50, 546
ZrmI AGTACT 2 cut(s) 117, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.