Rroxscaffold_2G00101400
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000263
Physical Location & Seq
Reverse (-)
23366383 .. 23367686
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101400.1

Sequence Viewer

Length: 627 bp
ATGACCGTCGACGGCTTCTTCCGCGACGTCTACAACGACGCCGCGCCTCGCCGAGGCCGAAGACGGTGGAGGAGGAACCAGAGCACTAAATTGTCGGCTTCAATTTCAGCAGAGAAAGCATTCGAATTGGGTGAGTCCCATTCTGATCCAGTTATGTTTGGTTTTTGCTGTAAAAGATTGCAATTACTAGTTCCAAGTTGTAGGATTGCTGTTGATTATTCAGTCACCCATCTTCAAAAGGCACCACCTTTTACAAGATTATATTCATCAAAACCATTACTAGGAGTCCAAGATGATAAAGCTCGCTCTTTTACAGTTTCATACCTTATAAACTCATTTGGGTTCTCCCCACAACTGGCTCTCTCTGCATCCAACAAGATGAAGGTACACTTCGACACCCCAGAAAAACCCGACTCTGTTATTAAGCTTTTTAAAGACTATGGACTCAGTGATGCCCACATCTCTGACATTGTTAAGAAATGCCCAGTTTTGCTTGTATCCAATGCTGAAAAGACCCTTTGGCCAAAACTCCAGTTTTTCACTTCCATTGGCCTTTCGGGCAATGACCTTGCCCGGATCTTCCGTGTCAACGCAAATATCTTGACATTGAGCTTAGAGAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

208

Amino Acids

23.47

Weight (kDa)

9.64

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 135 - 207 6e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
AatII GACGTC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 2 cut(s) 9, 30
AccII CGCG 2 cut(s) 24, 44
AciI CCGC 2 cut(s) 22, 42
AclWI GGATC 2 cut(s) 140, 584
AcoI YGGCCR 1 cut(s) 521
AcyI GRCGYC 2 cut(s) 27, 39
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 53, 281, 355
AgsI TTSAA 2 cut(s) 102, 236
AhlI ACTAGT 1 cut(s) 187
AluBI AGCT 3 cut(s) 302, 427, 612
AluI AGCT 3 cut(s) 302, 427, 612
Alw21I GWGCWC 1 cut(s) 86
AlwI GGATC 2 cut(s) 140, 584
AoxI GGCC 3 cut(s) 55, 521, 550
Asp700I GAANNNNTTC 1 cut(s) 119
AspLEI GCGC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 2 cut(s) 143, 217
AsuII TTCGAA 1 cut(s) 123
BalI TGGCCA 1 cut(s) 523
BanI GGYRCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 86
BccI CCATC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 28
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 1 cut(s) 574
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 2 cut(s) 188, 281
BfuI GTATCC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 558
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 574
BmiI GGNNCC 2 cut(s) 77, 243
BmrFI CCNGG 1 cut(s) 574
BmrI ACTGGG 1 cut(s) 479
BmsI GCATC 2 cut(s) 377, 442
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 574
BsaHI GRCGYC 2 cut(s) 27, 39
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 281, 355
Bse1I ACTGG 4 cut(s) 149, 360, 485, 532
Bse3DI GCAATG 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 368
BseLI CCNNNNNNNGG 3 cut(s) 53, 281, 355
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 4 cut(s) 149, 360, 485, 532
BseRI GAGGAG 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 24, 44
BshFI GGCC 3 cut(s) 57, 523, 552
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 574
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 53, 281, 355
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 3 cut(s) 57, 523, 552
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 145, 576
BspACI CCGC 2 cut(s) 22, 42
BspANI GGCC 3 cut(s) 57, 523, 552
BspCNI CTCAG 1 cut(s) 459
BspFNI CGCG 2 cut(s) 24, 44
BspLI GGNNCC 2 cut(s) 77, 243
BspPI GGATC 2 cut(s) 140, 584
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 568
BsrI ACTGG 4 cut(s) 149, 360, 485, 532
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 145, 576
BssNI GRCGYC 2 cut(s) 27, 39
Bst4CI ACNGT 3 cut(s) 7, 66, 316
BstACI GRCGYC 2 cut(s) 27, 39
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 2 cut(s) 446, 613
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 368
BstFNI CGCG 2 cut(s) 24, 44
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 148, 579
BstMBI GATC 2 cut(s) 145, 576
BstMWI GCNNNNNNNGC 4 cut(s) 21, 116, 365, 558
BstSCI CCNGG 1 cut(s) 572
BstUI CGCG 2 cut(s) 24, 44
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 576
BstYI RGATCY 1 cut(s) 576
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 3 cut(s) 57, 523, 552
BtsCI GGATG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 46
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 386
CviJI RGCY 9 cut(s) 15, 57, 98, 302, 359, 427, 523, 552, 612
CviKI_1 RGCY 9 cut(s) 15, 57, 98, 302, 359, 427, 523, 552, 612
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 2 cut(s) 446, 613
DpnI GATC 2 cut(s) 147, 578
DpnII GATC 2 cut(s) 145, 576
DraI TTTAAA 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 51
FaiI YATR 5 cut(s) 155, 262, 322, 329, 441
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 9, 30
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 2 cut(s) 188, 281
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 3 cut(s) 57, 523, 552
HapII CCGG 1 cut(s) 574
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 2 cut(s) 27, 39
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 2 cut(s) 10, 589
HindII GTYRAC 2 cut(s) 10, 589
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 134, 285, 413, 444
HpaII CCGG 1 cut(s) 574
HphI GGTGA 2 cut(s) 143, 217
Hpy166II GTNNAC 4 cut(s) 10, 31, 388, 589
Hpy188I TCNGA 2 cut(s) 145, 466
Hpy188III TCNNGA 1 cut(s) 601
Hpy8I GTNNAC 4 cut(s) 10, 31, 388, 589
Hpy99I CGWCG 4 cut(s) 11, 14, 29, 41
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 3 cut(s) 7, 66, 316
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 181, 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 116, 365, 558
HpyF3I CTNAG 2 cut(s) 446, 613
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 2 cut(s) 27, 39
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 145, 576
LpnPI CCDG 7 cut(s) 92, 162, 341, 414, 498, 545, 587
LweI GCATC 2 cut(s) 377, 442
MaeI CTAG 2 cut(s) 188, 281
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 147, 578
MboI GATC 2 cut(s) 145, 576
MboII GAAGA 4 cut(s) 10, 72, 224, 571
MflI RGATCY 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 4 cut(s) 89, 102, 125, 182
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 4 cut(s) 143, 294, 407, 438
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 4 cut(s) 47, 57, 63, 66
Mox20I TGGCCA 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 523
MseI TTAA 3 cut(s) 423, 432, 474
Msp20I TGGCCA 1 cut(s) 523
MspI CCGG 1 cut(s) 574
MspR9I CCNGG 1 cut(s) 574
Mva1269I GAATGC 1 cut(s) 119
MvnI CGCG 2 cut(s) 24, 44
MwoI GCNNNNNNNGC 4 cut(s) 21, 116, 365, 558
NciI CCSGG 1 cut(s) 574
NdeII GATC 2 cut(s) 145, 576
NlaIV GGNNCC 2 cut(s) 77, 243
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 223
NspV TTCGAA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 55
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 4 cut(s) 142, 293, 407, 438
PpsI GAGTC 4 cut(s) 142, 293, 407, 438
PsiI TTATAA 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 77, 243
PsuI RGATCY 1 cut(s) 576
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SalI GTCGAC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 423, 432, 474
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 145, 576
SchI GAGTC 4 cut(s) 143, 294, 407, 438
ScrFI CCNGG 1 cut(s) 574
SduI GDGCHC 1 cut(s) 86
SetI ASST 8 cut(s) 30, 250, 304, 327, 387, 429, 570, 614
SfaNI GCATC 2 cut(s) 377, 442
SfuI TTCGAA 1 cut(s) 123
SgrDI CGTCGACG 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 4 cut(s) 89, 102, 125, 182
SsiI CCGC 2 cut(s) 22, 42
SspMI CTAG 2 cut(s) 188, 281
StyD4I CCNGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 7, 66, 316
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 9, 123, 393
TasI AATT 4 cut(s) 89, 102, 125, 182
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 3 cut(s) 423, 432, 474
Tru9I TTAA 3 cut(s) 423, 432, 474
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 255, 309, 395
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 1 cut(s) 454
XagI CCTNNNNNAGG 1 cut(s) 51
XmiI GTMKAC 2 cut(s) 9, 30
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 188, 281
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.