RchiOBHm_Chr2g0144331
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Forward (+)
61960468 .. 61962766
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51428

Sequence Viewer

Length: 1233 bp
ATGTTTGGGTTTTGTTGTAGAAGATTGCAATTACTAGTTCCAAGCTGTAGCAGCATTTCTCTTGATTCTTCAGTGACCCATTTTCTAAAGGCATCACCTTTTAGCAGATCATATGCATCATTATTAGGATCTGCAATAGATGATGAAAAAGGTCACTCCTTTACAGTTTCATACCTTATAAACTCATGTGGGTTGTCCCCAGAAGTGGCTCTCTCTCTGTCCAAGAAGCAGAAGAGGGTACAGTTTGAATCCCCAGAAAAACCAGACTCGGTTATTAAGCTTCTAAAACACTATGGACTTAGTGATACCCATGTCTCCAATATTGTTAAGAAACGCCCAGACCTGCTCTTAGCCAATGCTGAAAAGATCCTTTTGCCCAAACTTGAGTTTTTCGCTTCTATTGGCCTTTCGGGCACTGACCTTGCTCGGGTTGTTTCCGGCAACCCAAATGTTTTGAACTTGAGCTTAGAGAGAAATCTGAGACCCTGTTATGATATGATCAAGAGTCTACCTATCCCAGACAAAATGGTGGGTCGTGTCTTTTCGAAATTGTATCAGGGATTCATGGTCAGCGCAAATGTACTAAGCAATATTGCCCCCAATATTGCATTTCTGAAGGAAGTTCAAGTGCCAGAATCCTCGGTCAATCTGTGTCTGAGCAATACCCTTTTTGCAGTGTCACGGGAAAACCAAAAGTTTAAGGAAAACGTGGAGAAAGTCATCAGTATGGGAATAAGCCCGTCTTCTGCAACCTTTTTGAAAGCCTTGTATGTGATTTCTGTGATGGATCACTCAAAATGGGTACAAAGGATGGAATCATATAAGATGACATTCGGTTGGACTGAAGATGTTTTCTTGTTGGCATTTAGAAAAAATCCATTGTTTATGGCATTGTTAGAGAAGAAAGTTTTAAGTAAAGTTGATTTTCTTGTCAAGAGAATGGGTTGGCAGCCTGCATTTGTAGCTAAATATCCTAGTGTTCTAACATTTAGTTTGGAGAAGTGGATTATACCTAGGTGCAAAGTTATTAGAGTGCTTCTCTTGAAGGGCTTAATAATAAGGGGAGAACATTCTTTGATTGGTACTGCCCTGTTGGCTGGTAAGAATTACTTCTTGGATAGGTTTGTGATCAGATATCAGAAGCAAGTACCTGAGTTATTGAATATCTTTCAAGGGAAAATGAGTCTTGCGGACGTTGGCTTAGGGTTTGAGGAAACAGGTGGAACGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

410

Amino Acids

45.92

Weight (kDa)

9.58

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 92 - 169 3e-12 mTERF
mTERF PF02536 157 - 355 2.9e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 508
AciI CCGC 1 cut(s) 1190
AclWI GGATC 3 cut(s) 136, 361, 795
AcuI CTGAAG 3 cut(s) 54, 635, 864
AfaI GTAC 5 cut(s) 240, 582, 804, 1084, 1149
AfiI CCNNNNNNNGG 2 cut(s) 205, 427
AgsI TTSAA 7 cut(s) 248, 457, 626, 760, 1045, 1162, 1172
AhlI ACTAGT 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AluBI AGCT 4 cut(s) 45, 280, 465, 965
AluI AGCT 4 cut(s) 45, 280, 465, 965
Alw26I GTCTC 2 cut(s) 319, 475
AlwI GGATC 3 cut(s) 136, 361, 795
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 2 cut(s) 51, 949
Asp700I GAANNNNTTC 1 cut(s) 1109
AspA2I CCTAGG 1 cut(s) 1013
AspLEI GCGC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 87
AsuII TTCGAA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 426
AvrII CCTAGG 1 cut(s) 1013
BaeGI GKGCMC 1 cut(s) 416
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BbsI GAAGAC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 63, 961
BccI CCATC 2 cut(s) 778, 805
BclI TGATCA 2 cut(s) 498, 1128
BcoDI GTCTC 2 cut(s) 319, 475
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 3 cut(s) 35, 975, 1014
BfmI CTRYAG 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 351
BglI GCCNNNNNGGC 2 cut(s) 411, 1094
BisI GCNGC 2 cut(s) 52, 950
BlnI CCTAGG 1 cut(s) 1013
BlsI GCNGC 2 cut(s) 53, 951
BmeT110I CYCGRG 1 cut(s) 426
BmsI GCATC 2 cut(s) 101, 125
BpiI GAAGAC 1 cut(s) 735
BplI GAGNNNNNCTC 2 cut(s) 1023, 1055
Bpu10I CCTNAGC 1 cut(s) 1201
Bpu14I TTCGAA 1 cut(s) 545
BpuEI CTTGAG 2 cut(s) 404, 481
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 2 cut(s) 639, 1013
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 427
BseDI CCNNGG 2 cut(s) 639, 1013
BseGI GGATG 1 cut(s) 816
BseLI CCNNNNNNNGG 2 cut(s) 205, 427
BseMII CTCAG 3 cut(s) 470, 647, 1143
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 63, 961
BshFI GGCC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 205, 427
BsmAI GTCTC 2 cut(s) 319, 475
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 405
Bso31I GGTCTC 1 cut(s) 475
BsoBI CYCGRG 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 1 cut(s) 416
Bsp143I GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
BspACI CCGC 1 cut(s) 1190
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 3 cut(s) 471, 648, 1144
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 3 cut(s) 136, 361, 795
BspT104I TTCGAA 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 639, 1013
BssMI GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
BssT1I CCWWGG 1 cut(s) 1013
Bst4CI ACNGT 2 cut(s) 166, 243
Bst6I CTCTTC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 954
BstDEI CTNAG 8 cut(s) 299, 349, 466, 479, 584, 656, 1152, 1201
BstF5I GGATG 1 cut(s) 816
BstHHI GCGC 1 cut(s) 575
BstKTI GATC 6 cut(s) 110, 131, 369, 501, 790, 1131
BstMAI GTCTC 2 cut(s) 319, 475
BstMBI GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
BstMWI GCNNNNNNNGC 4 cut(s) 51, 411, 962, 1094
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 63, 961
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 2 cut(s) 128, 366
BstYI RGATCY 2 cut(s) 128, 366
BsuRI GGCC 1 cut(s) 405
BtsCI GGATG 1 cut(s) 816
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 3 cut(s) 78, 414, 681
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 954
CfoI GCGC 1 cut(s) 575
Csp6I GTAC 5 cut(s) 239, 581, 803, 1083, 1148
CviAII CATG 3 cut(s) 186, 311, 565
CviQI GTAC 5 cut(s) 239, 581, 803, 1083, 1148
DdeI CTNAG 8 cut(s) 299, 349, 466, 479, 584, 656, 1152, 1201
DpnI GATC 6 cut(s) 109, 130, 368, 500, 789, 1130
DpnII GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 475
Eco32I GATATC 1 cut(s) 1136
Eco57I CTGAAG 3 cut(s) 54, 635, 864
Eco88I CYCGRG 1 cut(s) 426
EcoRV GATATC 1 cut(s) 1136
EcoT14I CCWWGG 1 cut(s) 1013
EcoT22I ATGCAT 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 1013
FaeI CATG 3 cut(s) 189, 314, 568
FalI AAGNNNNNCTT 4 cut(s) 727, 759, 1094, 1126
FaqI GGGAC 1 cut(s) 181
FatI CATG 3 cut(s) 185, 310, 564
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 2 cut(s) 498, 1128
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 2 cut(s) 52, 950
FokI GGATG 1 cut(s) 823
Fsp4HI GCNGC 2 cut(s) 52, 950
FspBI CTAG 3 cut(s) 35, 975, 1014
GlaI GCGC 1 cut(s) 574
GluI GCNGC 2 cut(s) 52, 950
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 438
HhaI GCGC 1 cut(s) 575
Hin1II CATG 3 cut(s) 189, 314, 568
Hin6I GCGC 1 cut(s) 573
HinP1I GCGC 1 cut(s) 573
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 8 cut(s) 65, 248, 266, 505, 561, 635, 815, 1183
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 5 cut(s) 480, 615, 657, 1133, 1140
Hpy188III TCNNGA 4 cut(s) 62, 502, 934, 1042
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 2 cut(s) 610, 1039
HpyCH4III ACNGT 2 cut(s) 166, 243
HpyCH4IV ACGT 2 cut(s) 708, 1194
HpyCH4V TGCA 8 cut(s) 28, 116, 134, 608, 674, 749, 956, 1020
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 411, 962, 1094
HpyF3I CTNAG 8 cut(s) 299, 349, 466, 479, 584, 656, 1152, 1201
HpySE526I ACGT 2 cut(s) 708, 1194
Hsp92II CATG 3 cut(s) 189, 314, 568
HspAI GCGC 1 cut(s) 573
Ksp22I TGATCA 2 cut(s) 498, 1128
Kzo9I GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
Lsp1109I GCAGC 2 cut(s) 63, 961
LweI GCATC 2 cut(s) 101, 125
MaeI CTAG 3 cut(s) 35, 975, 1014
MaeII ACGT 2 cut(s) 708, 1194
MaeIII GTNAC 3 cut(s) 73, 152, 678
MalI GATC 6 cut(s) 109, 130, 368, 500, 789, 1130
MboI GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
MboII GAAGA 6 cut(s) 33, 60, 244, 735, 857, 913
MflI RGATCY 2 cut(s) 128, 366
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 3 cut(s) 29, 548, 1105
MlyI GAGTC 3 cut(s) 260, 514, 1192
MmeI TCCRAC 1 cut(s) 818
MnlI CCTC 3 cut(s) 228, 649, 1204
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 1109
MseI TTAA 5 cut(s) 276, 327, 699, 911, 1052
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 1 cut(s) 438
MwoI GCNNNNNNNGC 4 cut(s) 51, 411, 962, 1094
NdeI CATATG 1 cut(s) 112
NdeII GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
NlaIII CATG 3 cut(s) 189, 314, 568
NmuCI GTSAC 3 cut(s) 73, 152, 678
NsiI ATGCAT 1 cut(s) 118
NspV TTCGAA 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 1109
PfeI GAWTC 5 cut(s) 65, 248, 561, 635, 815
PkrI GCNGC 2 cut(s) 53, 951
PleI GAGTC 3 cut(s) 260, 513, 1191
PpsI GAGTC 3 cut(s) 260, 513, 1191
PsiI TTATAA 1 cut(s) 179
PsuI RGATCY 2 cut(s) 128, 366
RsaI GTAC 5 cut(s) 240, 582, 804, 1084, 1149
RsaNI GTAC 5 cut(s) 239, 581, 803, 1083, 1148
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 5 cut(s) 276, 327, 699, 911, 1052
SatI GCNGC 2 cut(s) 52, 950
Sau3AI GATC 6 cut(s) 107, 128, 366, 498, 787, 1128
SchI GAGTC 3 cut(s) 260, 514, 1192
SduI GDGCHC 1 cut(s) 416
SfaNI GCATC 2 cut(s) 101, 125
SfcI CTRYAG 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 2 cut(s) 383, 460
SmoI CTYRAG 2 cut(s) 383, 460
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 3 cut(s) 29, 548, 1105
SsiI CCGC 1 cut(s) 1190
SspI AATATT 3 cut(s) 322, 592, 604
SspMI CTAG 3 cut(s) 35, 975, 1014
StyI CCWWGG 1 cut(s) 1013
TaaI ACNGT 2 cut(s) 166, 243
TaiI ACGT 2 cut(s) 711, 1197
TaqI TCGA 1 cut(s) 545
TaqII GACCGA 1 cut(s) 631
TasI AATT 3 cut(s) 29, 548, 1105
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 5 cut(s) 65, 248, 561, 635, 815
Tru1I TTAA 5 cut(s) 276, 327, 699, 911, 1052
Tru9I TTAA 5 cut(s) 276, 327, 699, 911, 1052
TscAI CASTG 3 cut(s) 78, 421, 681
TseFI GTSAC 3 cut(s) 73, 152, 678
TseI GCWGC 2 cut(s) 51, 949
Tsp45I GTSAC 3 cut(s) 73, 152, 678
TspDTI ATGAA 3 cut(s) 159, 159, 553
TspRI CASTG 3 cut(s) 78, 421, 681
XmaJI CCTAGG 1 cut(s) 1013
XmiI GTMKAC 1 cut(s) 508
XmnI GAANNNNTTC 1 cut(s) 1109
XspI CTAG 3 cut(s) 35, 975, 1014
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.