MD14G1088900.v1.1
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000263
Physical Location & Seq
Reverse (-)
11119074 .. 11120046
973 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1088900.v1.1.491

Sequence Viewer

Length: 609 bp
ATGAGTAAAATTGCAGCTGCAGCTTCAGAAGCATCAAATTTTGTAAGAGCTTGGCAGGAGGTTCGTTATGCTACTTCTCTCCAATCATTATCATCAGAACCGTTGTTAGAATCTGGATTAGATGAAGCACAAGAATGTGAAGGCTCTATTACAGTGTTATATCTCGTTAATTCATGTGGATTTTCCGCAGAAAAGGCTCTCACATTGTCTGAGAAAGTAAGCTTCGAAACCACAGAGAGACCATATTCTGTCCTTGGTCTTCTCAGAGACCATGGATTCGCTAATTCCGAAATCTCCAAACTTGTTAGTAAAGTCCCAAGGCTGCTTTTAGCCGACCATGAGAAGATCCTTTTGCCAAAACTTGAGTTTTTGCGTTCTCTAGGCCTTTCAGGCGCGAGCATTGCTCTTGCCATCTGTAGGAACCCTATTTTCTTGACTGCCAGCTTGAAGAATGCTCTAGTTCCTGGTTTTAATCTCTTCAAAAAAGAACTCCTCAGTGATGAAAAAGTTATGAACCTTATAACACGCTCGTGGGGAGTTTTGAGTGATAGGGTGCAAAGTAATATTGCTCAAAATCTCTCAGTTCTGAGAGCACTTGAAGTGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

203

Amino Acids

22.08

Weight (kDa)

6.17

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 85 - 202 2.9e-15 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AccII CGCG 1 cut(s) 395
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 417
AgsI TTSAA 3 cut(s) 448, 481, 599
AjnI CCWGG 1 cut(s) 463
AleI CACNNNNGTG 1 cut(s) 529
AluBI AGCT 5 cut(s) 17, 23, 50, 222, 444
AluI AGCT 5 cut(s) 17, 23, 50, 222, 444
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 2 cut(s) 232, 261
AlwI GGATC 1 cut(s) 340
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 4 cut(s) 14, 17, 20, 322
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 225
BauI CACGAG 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 4 cut(s) 4, 26, 32, 309
BccI CCATC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 589
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 232, 261
BfaI CTAG 2 cut(s) 380, 458
BfmI CTRYAG 2 cut(s) 18, 415
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 4 cut(s) 15, 18, 21, 323
BlsI GCNGC 4 cut(s) 16, 19, 22, 324
Bme1390I CCNGG 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 383
BsaI GGTCTC 2 cut(s) 232, 261
BsaJI CCNNGG 3 cut(s) 253, 271, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 253, 271, 317
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 5 cut(s) 201, 277, 508, 578, 594
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 4 cut(s) 4, 26, 32, 309
Bsh1236I CGCG 1 cut(s) 395
BshFI GGCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 595
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 2 cut(s) 232, 261
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 2 cut(s) 232, 261
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 5 cut(s) 202, 276, 507, 579, 593
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 1 cut(s) 422
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 340
BspT104I TTCGAA 1 cut(s) 225
BspTNI GGTCTC 2 cut(s) 232, 261
BsrDI GCAATG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 253, 271, 317
BssMI GATC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 3 cut(s) 253, 271, 317
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 102, 154
Bst6I CTCTTC 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 397, 442
BstDEI CTNAG 5 cut(s) 210, 263, 494, 580, 587
BstDSI CCRYGG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 395
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 2 cut(s) 232, 261
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 5 cut(s) 20, 29, 194, 390, 401
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 2 cut(s) 18, 415
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 4 cut(s) 4, 26, 32, 309
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 159, 502
Cac8I GCNNGC 2 cut(s) 397, 442
CfoI GCGC 1 cut(s) 395
CviAII CATG 3 cut(s) 174, 272, 338
DdeI CTNAG 5 cut(s) 210, 263, 494, 580, 587
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 3 cut(s) 253, 271, 317
Eco147I AGGCCT 1 cut(s) 384
Eco31I GGTCTC 2 cut(s) 232, 261
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 463
EcoT14I CCWWGG 3 cut(s) 253, 271, 317
ErhI CCWWGG 3 cut(s) 253, 271, 317
FaeI CATG 3 cut(s) 177, 275, 341
FaiI YATR 8 cut(s) 69, 160, 175, 244, 273, 339, 512, 521
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 173, 271, 337
Fnu4HI GCNGC 4 cut(s) 15, 18, 21, 323
Fsp4HI GCNGC 4 cut(s) 15, 18, 21, 323
FspBI CTAG 2 cut(s) 380, 458
GlaI GCGC 1 cut(s) 394
GluI GCNGC 4 cut(s) 15, 18, 21, 323
HaeIII GGCC 1 cut(s) 384
HhaI GCGC 1 cut(s) 395
Hin1II CATG 3 cut(s) 177, 275, 341
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 2 cut(s) 110, 276
Hpy188I TCNGA 6 cut(s) 28, 97, 211, 266, 289, 588
Hpy188III TCNNGA 2 cut(s) 114, 433
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 102, 154
HpyCH4V TGCA 3 cut(s) 14, 20, 556
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 29, 194, 390, 401
HpyF3I CTNAG 5 cut(s) 210, 263, 494, 580, 587
Hsp92II CATG 3 cut(s) 177, 275, 341
HspAI GCGC 1 cut(s) 393
Kzo9I GATC 1 cut(s) 345
LpnPI CCDG 6 cut(s) 41, 99, 375, 450, 454, 477
Lsp1109I GCAGC 4 cut(s) 4, 26, 32, 309
LweI GCATC 1 cut(s) 41
MaeI CTAG 2 cut(s) 380, 458
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 4 cut(s) 251, 355, 460, 469
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 4 cut(s) 9, 37, 169, 283
MnlI CCTC 2 cut(s) 52, 503
MseI TTAA 2 cut(s) 168, 471
MslI CAYNNNNRTG 2 cut(s) 133, 529
MspA1I CMGCKG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 5 cut(s) 20, 29, 194, 390, 401
NcoI CCATGG 1 cut(s) 271
NdeII GATC 1 cut(s) 345
NlaIII CATG 3 cut(s) 177, 275, 341
NlaIV GGNNCC 1 cut(s) 422
NspV TTCGAA 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 529
PceI AGGCCT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 110, 276
PkrI GCNGC 4 cut(s) 16, 19, 22, 324
PsiI TTATAA 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 422
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 17
RseI CAYNNNNRTG 2 cut(s) 133, 529
SaqAI TTAA 2 cut(s) 168, 471
SatI GCNGC 4 cut(s) 15, 18, 21, 323
Sau3AI GATC 1 cut(s) 345
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 595
SetI ASST 7 cut(s) 19, 25, 52, 63, 224, 446, 519
SfaNI GCATC 1 cut(s) 41
SfcI CTRYAG 2 cut(s) 18, 415
SfuI TTCGAA 1 cut(s) 225
SmiMI CAYNNNNRTG 2 cut(s) 133, 529
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 4 cut(s) 9, 37, 169, 283
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 1 cut(s) 186
SspI AATATT 1 cut(s) 565
SspMI CTAG 2 cut(s) 380, 458
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 3 cut(s) 253, 271, 317
TaaI ACNGT 2 cut(s) 102, 154
TaqI TCGA 1 cut(s) 225
TasI AATT 4 cut(s) 9, 37, 169, 283
TfiI GAWTC 2 cut(s) 110, 276
Tru1I TTAA 2 cut(s) 168, 471
Tru9I TTAA 2 cut(s) 168, 471
TscAI CASTG 2 cut(s) 159, 502
TseI GCWGC 4 cut(s) 14, 17, 20, 322
TspDTI ATGAA 4 cut(s) 138, 162, 516, 527
TspRI CASTG 2 cut(s) 159, 502
XapI RAATTY 1 cut(s) 37
XspI CTAG 2 cut(s) 380, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.