Rh2BG447600
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000263
Physical Location & Seq
Forward (+)
63204905 .. 63222721
17817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG447600.1

Sequence Viewer

Length: 882 bp
ATGGAGAACAGAGTCCACCAACAACTAAATATTACATCCACATATGGTGGCATATCATCATCATCAACCACCGCCCTTGCTTGGGTCGTCAGTTACAACCGACGCATTTTGGGTCAAAGTTTAGAGAGAAGTCTCCGACCGTGCTATGATATCATCAAAAGTCTACCTATCCCCGACAACATGGTGGCTGTTTTCTTGAAGAACTCGAACCGGGCATTTGGGGTCAAGATGCTTAGCAATCTTGTTCCCAATGTTTCAGTTCTTAGGGCAATTCAAGTGCCGGAATCCTGCATCTCCTTTTACGTTACCTATCATCCTCTTGTGCTGTCCCCTGAAACTAGCAAGTTTAAGGAAAGTGTAAACAAGATCATTAATCTCGGAATTCTGCCTCCGAGTTTTACTTTCATGAAGGCACTACAAGTCATCTCTCAGATGGATGCATCAAAGTGGAGACGAAAGACAGAGTTCTATAGGAAGTGCGGTTGGACTGAGGATGACTTTCTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTGTCAGAGGAGAAGTCTTCAAGTAAAATTGAGTTTCTTGTGAACAAAATGGGTTGGCAGCCTGCAGAAGTGGCTGACAGGCCTGATATTCTAACTCATAGTTTGGAGAAGTCTATCATACCTAGGTGTTCAGTTATTAGAGTTCTCCAATATAAGGGTTTGATGAAAAAGGGAGAACTTTCTCAAGCTACCATGCTGATAAACAGTAGGAAGCGCTTCTTGGATAGGTTTGTGACCAAATATCTGGATCAAGCACCTGAACTGTTGAGTATCTTTCAAGGGCAAATGTCTCTAGCAGAATTGGGTGTAGGATTTGAGGAAAGAGATGGAGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

293

Amino Acids

33.42

Weight (kDa)

9.57

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 33 - 253 7.1e-25 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 163
AciI CCGC 2 cut(s) 72, 480
AclWI GGATC 1 cut(s) 792
AcsI RAATTY 1 cut(s) 381
AfeI AGCGCT 1 cut(s) 752
AfiI CCNNNNNNNGG 3 cut(s) 81, 82, 691
AgsI TTSAA 4 cut(s) 199, 275, 558, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 2 cut(s) 537, 725
AluI AGCT 2 cut(s) 537, 725
Alw26I GTCTC 3 cut(s) 137, 445, 831
AlwI GGATC 1 cut(s) 792
Aor51HI AGCGCT 1 cut(s) 752
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 1 cut(s) 595
ApoI RAATTY 1 cut(s) 381
AseI ATTAAT 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 752
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 1 cut(s) 753
AsuC2I CCSGG 1 cut(s) 212
AvrII CCTAGG 1 cut(s) 659
BbsI GAAGAC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 607
BccI CCATC 2 cut(s) 427, 857
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 137, 445, 831
BfaI CTAG 3 cut(s) 339, 660, 830
BfmI CTRYAG 2 cut(s) 469, 600
BfoI RGCGCY 1 cut(s) 754
BisI GCNGC 1 cut(s) 596
BlnI CCTAGG 1 cut(s) 659
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 597
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 4 cut(s) 219, 300, 427, 449
BpiI GAAGAC 1 cut(s) 546
Bpu1102I GCTNAGC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 659
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 82, 691
BseDI CCNNGG 1 cut(s) 659
BseGI GGATG 4 cut(s) 35, 313, 442, 499
BseLI CCNNNNNNNGG 3 cut(s) 81, 82, 691
BseMII CTCAG 2 cut(s) 443, 480
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 607
Bsh1285I CGRYCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 211, 281
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 81, 82, 691
BsmAI GTCTC 3 cut(s) 137, 445, 831
BsmBI CGTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 1 cut(s) 619
Bsp143I GATC 2 cut(s) 366, 784
Bsp1720I GCTNAGC 1 cut(s) 233
BspACI CCGC 2 cut(s) 72, 480
BspANI GGCC 1 cut(s) 619
BspCNI CTCAG 2 cut(s) 442, 481
BspHI TCATGA 1 cut(s) 405
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 1 cut(s) 792
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 2 cut(s) 366, 784
BssT1I CCWWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 141, 743, 801
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 4 cut(s) 233, 263, 429, 489
BstF5I GGATG 4 cut(s) 35, 313, 442, 499
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 2 cut(s) 369, 787
BstMAI GTCTC 3 cut(s) 137, 445, 831
BstMBI GATC 2 cut(s) 366, 784
BstMCI CGRYCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 2 cut(s) 469, 600
BstV1I GCAGC 1 cut(s) 607
BstV2I GAAGAC 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 781
BsuRI GGCC 1 cut(s) 619
BtsCI GGATG 4 cut(s) 35, 313, 442, 499
Cac8I GCNNGC 1 cut(s) 600
CciI TCATGA 1 cut(s) 405
CfoI GCGC 1 cut(s) 753
CseI GACGC 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 4 cut(s) 181, 406, 526, 730
CviJI RGCY 6 cut(s) 188, 537, 598, 611, 619, 725
CviKI_1 RGCY 6 cut(s) 188, 537, 598, 611, 619, 725
DdeI CTNAG 4 cut(s) 233, 263, 429, 489
DpnI GATC 2 cut(s) 368, 786
DpnII GATC 2 cut(s) 366, 784
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 619
Eco32I GATATC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 381
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 659
EcoT22I ATGCAT 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 659
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 4 cut(s) 184, 409, 529, 733
FalI AAGNNNNNCTT 2 cut(s) 740, 772
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 180, 405, 525, 729
FauNDI CATATG 1 cut(s) 43
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 596
FokI GGATG 4 cut(s) 22, 300, 449, 506
Fsp4HI GCNGC 1 cut(s) 596
FspBI CTAG 3 cut(s) 339, 660, 830
GlaI GCGC 1 cut(s) 752
GluI GCNGC 1 cut(s) 596
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 1 cut(s) 619
HapII CCGG 2 cut(s) 211, 281
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 753
Hin1II CATG 4 cut(s) 184, 409, 529, 733
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HinfI GANTC 3 cut(s) 12, 284, 520
HpaII CCGG 2 cut(s) 211, 281
Hpy166II GTNNAC 4 cut(s) 16, 164, 361, 580
Hpy188I TCNGA 5 cut(s) 137, 380, 393, 432, 544
Hpy188III TCNNGA 4 cut(s) 196, 226, 406, 782
Hpy8I GTNNAC 4 cut(s) 16, 164, 361, 580
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 3 cut(s) 141, 743, 801
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 291, 440, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 4 cut(s) 233, 263, 429, 489
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 4 cut(s) 184, 409, 529, 733
HspAI GCGC 1 cut(s) 751
Kzo9I GATC 2 cut(s) 366, 784
LpnPI CCDG 9 cut(s) 224, 294, 301, 345, 601, 612, 633, 767, 807
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 4 cut(s) 219, 300, 427, 449
MaeI CTAG 3 cut(s) 339, 660, 830
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 92, 304, 769
MalI GATC 2 cut(s) 368, 786
MboI GATC 2 cut(s) 366, 784
MboII GAAGA 2 cut(s) 211, 546
MfeI CAATTG 1 cut(s) 875
MluCI AATT 5 cut(s) 270, 381, 564, 836, 875
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 2 cut(s) 160, 464
MnlI CCTC 5 cut(s) 327, 399, 484, 538, 847
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 2 cut(s) 348, 372
MslI CAYNNNNRTG 2 cut(s) 445, 530
MspI CCGG 2 cut(s) 211, 281
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 875
MwoI GCNNNNNNNGC 1 cut(s) 608
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 43
NdeII GATC 2 cut(s) 366, 784
NlaIII CATG 4 cut(s) 184, 409, 529, 733
NmuCI GTSAC 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 442
PagI TCATGA 1 cut(s) 405
PceI AGGCCT 1 cut(s) 619
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 2 cut(s) 284, 520
PkrI GCNGC 1 cut(s) 597
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 372
PstI CTGCAG 1 cut(s) 604
RseI CAYNNNNRTG 2 cut(s) 445, 530
SaqAI TTAA 2 cut(s) 348, 372
SatI GCNGC 1 cut(s) 596
Sau3AI GATC 2 cut(s) 366, 784
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 212
SetI ASST 9 cut(s) 169, 306, 311, 539, 661, 665, 727, 767, 796
SfaNI GCATC 4 cut(s) 219, 300, 427, 449
SfcI CTRYAG 2 cut(s) 469, 600
SmiMI CAYNNNNRTG 2 cut(s) 445, 530
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
Sse9I AATT 5 cut(s) 270, 381, 564, 836, 875
SseBI AGGCCT 1 cut(s) 619
SsiI CCGC 2 cut(s) 72, 480
SspI AATATT 1 cut(s) 31
SspMI CTAG 3 cut(s) 339, 660, 830
StuI AGGCCT 1 cut(s) 619
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 3 cut(s) 141, 743, 801
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 206
TasI AATT 5 cut(s) 270, 381, 564, 836, 875
TfiI GAWTC 2 cut(s) 284, 520
Tru1I TTAA 2 cut(s) 348, 372
Tru9I TTAA 2 cut(s) 348, 372
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 1 cut(s) 595
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 3 cut(s) 394, 422, 716
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 1 cut(s) 381
XmaJI CCTAGG 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 3 cut(s) 339, 660, 830
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.