MD09G1190000.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000263
Physical Location & Seq
Reverse (-)
16586643 .. 16586996
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1190000.v1.1.491

Sequence Viewer

Length: 354 bp
ATGCTTAATTTTTGGTGTAAAAGATTGCAATTAGTGCTTCCATGTTGTAGAATTGTTTGTGGTTCAGCGACCCGTTTGCGTGTCTTTCAAAAGGAGCCTATTTTTATCGGATCATATGCATCGAAATCATCATTAGTTGCTGAAAAGGATAAAATCAGAGAGAAAGATCGCTCTTTTACAGTTATGTACCTTATAAATCCATGTGGGTTGTCGATAGATGACGCTGTTTCTGCGTCGAAGAAGGTGCATTTTGATTCCCCAGAAAGACCGGACTCGGTTTTTAATCTTTTCAAACACTATGGAGTCGGGGATATATCTCCAGTCTTGTTAGGAGACGCCCAAGGCTGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

118

Amino Acids

13.06

Weight (kDa)

8.8

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AclWI GGATC 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 336
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 2 cut(s) 89, 292
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 332
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 226, 260
BcoDI GTCTC 1 cut(s) 327
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 327
BsmBI CGTCTC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 110, 166
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 2 cut(s) 110, 166
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 351
BstKTI GATC 2 cut(s) 113, 169
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 2 cut(s) 110, 166
BstMWI GCNNNNNNNGC 2 cut(s) 34, 230
BstV1I GCAGC 1 cut(s) 332
CseI GACGC 3 cut(s) 222, 230, 344
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 42, 201
CviJI RGCY 2 cut(s) 97, 345
CviKI_1 RGCY 2 cut(s) 97, 345
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 112, 168
DpnII GATC 2 cut(s) 110, 166
Eco130I CCWWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 2 cut(s) 45, 204
FaiI YATR 8 cut(s) 43, 115, 117, 185, 194, 202, 300, 314
FatI CATG 2 cut(s) 41, 200
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 303
HapII CCGG 1 cut(s) 269
HgaI GACGC 3 cut(s) 222, 230, 344
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 2 cut(s) 45, 204
HinfI GANTC 3 cut(s) 254, 272, 303
HpaII CCGG 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 110, 158
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 28, 119, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 230
HpyF3I CTNAG 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 2 cut(s) 45, 204
Kzo9I GATC 2 cut(s) 110, 166
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 273, 282, 333
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 1 cut(s) 128
MalI GATC 2 cut(s) 112, 168
MboI GATC 2 cut(s) 110, 166
MboII GAAGA 1 cut(s) 250
MluCI AATT 3 cut(s) 7, 29, 51
MlyI GAGTC 2 cut(s) 266, 312
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 2 cut(s) 6, 282
MspI CCGG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 34, 230
NdeI CATATG 1 cut(s) 115
NdeII GATC 2 cut(s) 110, 166
NlaIII CATG 2 cut(s) 45, 204
NlaIV GGNNCC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 121
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 2 cut(s) 266, 311
PpsI GAGTC 2 cut(s) 266, 311
PsiI TTATAA 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 96
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 6, 282
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 2 cut(s) 110, 166
SchI GAGTC 2 cut(s) 266, 312
SetI ASST 2 cut(s) 192, 246
SfaNI GCATC 1 cut(s) 128
Sse9I AATT 3 cut(s) 7, 29, 51
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 3 cut(s) 122, 212, 236
TasI AATT 3 cut(s) 7, 29, 51
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 6, 282
Tru9I TTAA 2 cut(s) 6, 282
TseI GCWGC 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.