RchiOBHm_Chr4g0422031
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000263
Physical Location & Seq
Forward (+)
47702427 .. 47705183
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39163

Sequence Viewer

Length: 888 bp
ATGTGCAAAGTTTGGAGAACCCTGAAATTCATGGAAGTCAGGAATGCATTGACAATTGGTCGTTGGTTGAAGCTGAGCACTGAGCTGAAAAGCTATTCATACTCGGTTCTTTGCAGCAACCCAAGTGTTTTGAAACGAAATGTAGATAGAAGTCTCAGTCCTTGTTACGAAATCCTCAGAAGTCTACTTGGTTCCGACATAAAGTTTGCAGGTTTCTTTAAGAACTCCTATCAGCTGTTGACGGTCAAATCAGTAAGCAACATTGCTCGGAATGTTTCAGTTCTCAGAGAACTTAAAGCACCAGAATCTTTAATCTCTTACTATGCAACATGTCAGCCACTGTTAATGTCCCTTGAAAACGAGAAGTTTCACCAAAATGTCAACAAGGTCATGAGTTTGGGATTCCGCCCTTCAACATCAACGACGTTCATGAAAGCACTATTTGTGATCTCCACTACGGATTCATCAAAATGGGCACAAAAGATGGATTTCTATAAAAAGTGTGGTTGGACTGAAGATGACTTTTTGCTGGCATTTAGTAAGAATCCCCTCTTTATGAACATGACAGAGAAGAATATTTCTAGTAAAATGGATTTTATTGTCAACAAAATGGCTTTGGTTCAGCCTGCAGATTTGGCTCATTATCCGACTGTCCTAACTTATAGTTTGGAGAATCGGATAATACCTAGGGCTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAGCAAGGGGAGATTTTTCTTTCAACAGCTTGATGATATACAATAATAAGAAGTTCTTGGATAAGTTTGTGGTCCCATATCAACCGCAAGTACCTGAATTGTTGAGCATCTTTGCAGGGGAAATGGGTCTGGGTCTTGTGGAACTGGGCATTAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

295

Amino Acids

33.69

Weight (kDa)

9.6

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 9 - 262 4.3e-22 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 184
AciI CCGC 2 cut(s) 406, 812
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 2 cut(s) 534, 678
AfaI GTAC 1 cut(s) 819
AfiI CCNNNNNNNGG 1 cut(s) 718
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 6 cut(s) 70, 133, 356, 414, 718, 751
AhdI GACNNNNNGTC 1 cut(s) 57
AluBI AGCT 5 cut(s) 73, 85, 93, 235, 756
AluI AGCT 5 cut(s) 73, 85, 93, 235, 756
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
AspA2I CCTAGG 1 cut(s) 686
AspS9I GGNCC 1 cut(s) 799
AsuHPI GGTGA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 799
AvrII CCTAGG 1 cut(s) 686
BaeGI GKGCMC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 582, 687
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 200
BisI GCNGC 1 cut(s) 115
BlnI CCTAGG 1 cut(s) 686
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 799
BmeRI GACNNNNNGTC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 799
BmiI GGNNCC 2 cut(s) 193, 801
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 1 cut(s) 881
Bpu1102I GCTNAGC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 686
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 686
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 5 cut(s) 65, 72, 169, 190, 298
BseNI ACTGG 1 cut(s) 876
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 80
BslFI GGGAC 2 cut(s) 334, 785
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 334, 785
BsmI GAATGC 1 cut(s) 49
Bsp1286I GDGCHC 2 cut(s) 80, 478
Bsp143I GATC 1 cut(s) 447
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 2 cut(s) 406, 812
BspCNI CTCAG 5 cut(s) 66, 73, 168, 189, 297
BspHI TCATGA 2 cut(s) 390, 429
BspLI GGNNCC 2 cut(s) 193, 801
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 876
BssECI CCNNGG 1 cut(s) 686
BssMI GATC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 686
Bst4CI ACNGT 3 cut(s) 244, 342, 652
BstC8I GCNNGC 2 cut(s) 531, 627
BstDEI CTNAG 5 cut(s) 74, 81, 155, 176, 284
BstENI CCTNNNNNAGG 1 cut(s) 716
BstKTI GATC 1 cut(s) 450
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNSI RCATGY 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 78, 338
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 2 cut(s) 531, 627
CaiI CAGNNNCTG 1 cut(s) 340
CciI TCATGA 2 cut(s) 390, 429
Cfr13I GGNCC 1 cut(s) 799
Csp6I GTAC 1 cut(s) 818
CviAII CATG 5 cut(s) 31, 330, 391, 430, 562
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 5 cut(s) 74, 81, 155, 176, 284
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
DriI GACNNNNNGTC 1 cut(s) 57
Eam1105I GACNNNNNGTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 686
Eco47I GGWCC 1 cut(s) 799
Eco57I CTGAAG 2 cut(s) 534, 678
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoT14I CCWWGG 1 cut(s) 686
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 686
FaeI CATG 5 cut(s) 34, 333, 394, 433, 565
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 2 cut(s) 334, 785
FatI CATG 5 cut(s) 30, 329, 390, 429, 561
FblI GTMKAC 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 2 cut(s) 582, 687
GluI GCNGC 1 cut(s) 115
Hin1II CATG 5 cut(s) 34, 333, 394, 433, 565
HincII GTYRAC 3 cut(s) 240, 382, 604
HindII GTYRAC 3 cut(s) 240, 382, 604
HinfI GANTC 5 cut(s) 305, 402, 461, 544, 673
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 4 cut(s) 185, 240, 382, 604
Hpy188I TCNGA 6 cut(s) 179, 196, 270, 287, 648, 678
Hpy188III TCNNGA 3 cut(s) 40, 391, 430
Hpy8I GTNNAC 4 cut(s) 185, 240, 382, 604
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 420, 712
HpyCH4III ACNGT 3 cut(s) 244, 342, 652
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 7 cut(s) 6, 47, 114, 209, 326, 629, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 5 cut(s) 74, 81, 155, 176, 284
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 5 cut(s) 34, 333, 394, 433, 565
Kzo9I GATC 1 cut(s) 447
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 843
MaeI CTAG 2 cut(s) 582, 687
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 164
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 2 cut(s) 527, 583
MfeI CAATTG 1 cut(s) 54
MhlI GDGCHC 2 cut(s) 80, 478
MluCI AATT 3 cut(s) 26, 54, 824
MmeI TCCRAC 3 cut(s) 219, 488, 671
MnlI CCTC 2 cut(s) 185, 560
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 5 cut(s) 219, 294, 311, 344, 725
MslI CAYNNNNRTG 2 cut(s) 375, 469
MspA1I CMGCKG 1 cut(s) 235
MunI CAATTG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 635
NdeII GATC 1 cut(s) 447
NlaIII CATG 5 cut(s) 34, 333, 394, 433, 565
NlaIV GGNNCC 2 cut(s) 193, 801
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 1 cut(s) 333
PagI TCATGA 2 cut(s) 390, 429
PciI ACATGT 1 cut(s) 329
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 5 cut(s) 305, 402, 461, 544, 673
PkrI GCNGC 1 cut(s) 116
PscI ACATGT 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 193, 801
PspPI GGNCC 1 cut(s) 799
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
RseI CAYNNNNRTG 2 cut(s) 375, 469
SaqAI TTAA 5 cut(s) 219, 294, 311, 344, 725
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 1 cut(s) 799
SduI GDGCHC 2 cut(s) 80, 478
SfaNI GCATC 1 cut(s) 843
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 799
SmiMI CAYNNNNRTG 2 cut(s) 375, 469
Sse9I AATT 3 cut(s) 26, 54, 824
SsiI CCGC 2 cut(s) 406, 812
SspI AATATT 1 cut(s) 577
SspMI CTAG 2 cut(s) 582, 687
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 3 cut(s) 244, 342, 652
TaiI ACGT 1 cut(s) 428
TasI AATT 3 cut(s) 26, 54, 824
TfiI GAWTC 5 cut(s) 305, 402, 461, 544, 673
Tru1I TTAA 5 cut(s) 219, 294, 311, 344, 725
Tru9I TTAA 5 cut(s) 219, 294, 311, 344, 725
TscAI CASTG 2 cut(s) 85, 345
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 6 cut(s) 19, 87, 418, 446, 453, 572
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 85, 345
VpaK11BI GGWCC 1 cut(s) 799
XagI CCTNNNNNAGG 1 cut(s) 716
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 333
XmaJI CCTAGG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 2 cut(s) 582, 687
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.