Rw1G020580
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000263
Physical Location & Seq
Reverse (-)
44194021 .. 44196496
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020580.1

Sequence Viewer

Length: 1080 bp
ATGGCTGAGCCAAAACCCAAATCCCAAATTGACGAAGCAAGCGAGCTATTCTTCAAAATCCAAGGCTGGGTGATTGAAGCAGAGCATAGATACGCTTCGTATTTGGTGAGCCCCTTCCTGATTCCTTCAATTATCTCATTATCCTTTGCTCTAATTATGTTTGAACATAAAGGTGGCTCTTTTACAGTTTCATACCTTATGAACTCATGTGGGATGGTACACTTTGAAACCCCAGAGCGACCCGACTCGGTTATTAAGCTTTCCAAAAACAATGGACTCAATGATGCCCAAATCACCTTGCTTGTTAAGAAATTGCCAAGGTTGCTCTTATACAATCCTGATACCCTTTTACCCAAACTTGCATTTTTCGGTTCTCTAGGCTTTTCAGGCACCGACCTCGCCAATGCCCTCTTTCACAATCCCATGATCTTGACGCGAAGCTTAGAGAAATGTATCCTTCCTTGTTTTGATCTGATCAAAAGTATAGTTGTTGAGGATAAAAGGGTTGCGACTGCTTTAGGACCTCGAAATGAACAATTGTTCAAGGAAGATGTCAACAAGGTTATGAGTATGGGAATCGAACCTTCATCATCTGCGACGTTCATGAAAGCACTAGTTGTGACTTTTATGGTGGATGCATCAAAGCGGGAACAAAAGATGCAATTTTATAAGGAACGGGGTTGGACTGAAGATGATTTTGTGTTGGCATTTAGAAAACATCCCCTGTTTATGACCTTCTCTGAGAAGAATATTTCGAGCAAAATGGATTTTCTTCTGAACAAGATGGGTTGGCAGCCTGCAAATGTGGCTGGGGATCCATATGTTTTAACTTATAGTTTGGAGAAGCGGATCATACCTACATGTTCAGTTATTAGAGTTCTCCTGTTGAAGGGCTTAATAACGAAGGGAGAGTGTTCCTTGGTTTCCATTCTGAAGAAAAGTGAGAAGTACTTGTTGAATAAGATTGTGCTCAAATATCAAGAGCAAGTACCTGAACTATTGAGCATCTATCAAGGCAAAATGGGTCTTGCAGACCTCGGATTAGGATTTGAGGACAGAGCTAGACTGAATCATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

359

Amino Acids

40.63

Weight (kDa)

8.88

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 89 - 194 3.9e-09 mTERF
mTERF PF02536 178 - 316 5.2e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 389
AccII CGCG 1 cut(s) 436
AciI CCGC 2 cut(s) 646, 847
AclWI GGATC 3 cut(s) 809, 822, 857
AcuI CTGAAG 2 cut(s) 708, 953
AfaI GTAC 3 cut(s) 219, 950, 990
AfiI CCNNNNNNNGG 2 cut(s) 67, 889
AflIII ACRYGT 1 cut(s) 860
AgsI TTSAA 8 cut(s) 55, 77, 129, 164, 227, 544, 889, 958
AhlI ACTAGT 1 cut(s) 613
AluBI AGCT 4 cut(s) 46, 259, 441, 1061
AluI AGCT 4 cut(s) 46, 259, 441, 1061
Alw21I GWGCWC 1 cut(s) 972
AlwI GGATC 3 cut(s) 809, 822, 857
ApeKI GCWGC 1 cut(s) 793
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 82, 118, 286
AvaII GGWCC 1 cut(s) 521
BamHI GGATCC 1 cut(s) 814
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 1 cut(s) 805
BccI CCATC 2 cut(s) 208, 778
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciVI GTATCC 1 cut(s) 464
BclI TGATCA 1 cut(s) 474
BcuI ACTAGT 1 cut(s) 613
BfaI CTAG 3 cut(s) 377, 614, 1062
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 1 cut(s) 794
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 795
BmcAI AGTACT 1 cut(s) 950
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 2 cut(s) 391, 816
BmsI GCATC 5 cut(s) 274, 625, 647, 648, 1014
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 4 cut(s) 61, 317, 918, 1036
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 889
BseDI CCNNGG 4 cut(s) 61, 317, 918, 1036
BseGI GGATG 3 cut(s) 219, 640, 718
BseLI CCNNNNNNNGG 2 cut(s) 67, 889
BseMII CTCAG 1 cut(s) 732
BseXI GCAGC 1 cut(s) 805
BseYI CCCAGC 2 cut(s) 66, 809
Bsh1236I CGCG 1 cut(s) 436
BshNI GGYRCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 972
BslI CCNNNNNNNGG 2 cut(s) 67, 889
Bsp1286I GDGCHC 2 cut(s) 113, 972
Bsp143I GATC 5 cut(s) 426, 469, 474, 814, 849
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 646, 847
BspCNI CTCAG 1 cut(s) 733
BspFNI CGCG 1 cut(s) 436
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 391, 816
BspPI GGATC 3 cut(s) 809, 822, 857
BspT107I GGYRCC 1 cut(s) 389
BssECI CCNNGG 4 cut(s) 61, 317, 918, 1036
BssMI GATC 5 cut(s) 426, 469, 474, 814, 849
BssT1I CCWWGG 3 cut(s) 61, 317, 918
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 40, 44, 798
BstDEI CTNAG 3 cut(s) 6, 442, 741
BstENI CCTNNNNNAGG 1 cut(s) 887
BstF5I GGATG 3 cut(s) 219, 640, 718
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 5 cut(s) 429, 472, 477, 817, 852
BstMBI GATC 5 cut(s) 426, 469, 474, 814, 849
BstMWI GCNNNNNNNGC 3 cut(s) 322, 387, 806
BstNSI RCATGY 1 cut(s) 864
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 805
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BsuI GTATCC 1 cut(s) 464
BtsCI GGATG 3 cut(s) 219, 640, 718
Cac8I GCNNGC 3 cut(s) 40, 44, 798
CciI TCATGA 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 521
CseI GACGC 1 cut(s) 442
Csp6I GTAC 3 cut(s) 218, 949, 989
CviAII CATG 4 cut(s) 207, 424, 604, 861
CviQI GTAC 3 cut(s) 218, 949, 989
DdeI CTNAG 3 cut(s) 6, 442, 741
DpnI GATC 5 cut(s) 428, 471, 476, 816, 851
DpnII GATC 5 cut(s) 426, 469, 474, 814, 849
Eco130I CCWWGG 3 cut(s) 61, 317, 918
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 2 cut(s) 708, 953
EcoNI CCTNNNNNAGG 1 cut(s) 887
EcoO109I RGGNCCY 1 cut(s) 521
EcoT14I CCWWGG 3 cut(s) 61, 317, 918
EcoT22I ATGCAT 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 3 cut(s) 61, 317, 918
FaeI CATG 4 cut(s) 210, 427, 607, 864
FatI CATG 4 cut(s) 206, 423, 603, 860
FauI CCCGC 1 cut(s) 639
FauNDI CATATG 1 cut(s) 820
FbaI TGATCA 1 cut(s) 474
Fnu4HI GCNGC 1 cut(s) 794
FokI GGATG 3 cut(s) 226, 647, 705
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 794
FspBI CTAG 3 cut(s) 377, 614, 1062
GluI GCNGC 1 cut(s) 794
GsaI CCCAGC 2 cut(s) 70, 813
HgaI GACGC 1 cut(s) 442
Hin1II CATG 4 cut(s) 210, 427, 607, 864
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 2 cut(s) 257, 439
HinfI GANTC 5 cut(s) 121, 245, 276, 576, 1069
HphI GGTGA 3 cut(s) 82, 118, 286
Hpy166II GTNNAC 2 cut(s) 220, 556
Hpy188I TCNGA 5 cut(s) 474, 742, 777, 933, 1040
Hpy188III TCNNGA 5 cut(s) 118, 338, 430, 604, 980
Hpy8I GTNNAC 2 cut(s) 220, 556
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 7 cut(s) 124, 135, 467, 594, 745, 883, 898
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 5 cut(s) 362, 638, 661, 800, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 387, 806
HpyF3I CTNAG 3 cut(s) 6, 442, 741
HpySE526I ACGT 1 cut(s) 599
Hsp92II CATG 4 cut(s) 210, 427, 607, 864
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 5 cut(s) 426, 469, 474, 814, 849
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 5 cut(s) 274, 625, 647, 648, 1014
MaeI CTAG 3 cut(s) 377, 614, 1062
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 1 cut(s) 619
MalI GATC 5 cut(s) 428, 471, 476, 816, 851
MboI GATC 5 cut(s) 426, 469, 474, 814, 849
MboII GAAGA 6 cut(s) 43, 560, 701, 757, 764, 946
MfeI CAATTG 1 cut(s) 536
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 2 cut(s) 113, 972
MluCI AATT 6 cut(s) 27, 129, 153, 311, 536, 662
MlyI GAGTC 2 cut(s) 239, 270
MmeI TCCRAC 1 cut(s) 662
MnlI CCTC 6 cut(s) 407, 419, 487, 534, 1045, 1046
Mph1103I ATGCAT 1 cut(s) 640
MseI TTAA 4 cut(s) 255, 306, 827, 896
MslI CAYNNNNRTG 1 cut(s) 171
MunI CAATTG 1 cut(s) 536
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 3 cut(s) 322, 387, 806
NdeI CATATG 1 cut(s) 820
NdeII GATC 5 cut(s) 426, 469, 474, 814, 849
NlaIII CATG 4 cut(s) 210, 427, 607, 864
NlaIV GGNNCC 2 cut(s) 391, 816
NmuCI GTSAC 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 640
NspI RCATGY 1 cut(s) 864
PagI TCATGA 1 cut(s) 603
PciI ACATGT 1 cut(s) 860
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 3 cut(s) 121, 576, 1069
PkrI GCNGC 1 cut(s) 795
PleI GAGTC 2 cut(s) 239, 270
PpsI GAGTC 2 cut(s) 239, 270
PpuMI RGGWCCY 1 cut(s) 521
PscI ACATGT 1 cut(s) 860
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 521
PspFI CCCAGC 2 cut(s) 66, 809
PspN4I GGNNCC 2 cut(s) 391, 816
PspPI GGNCC 1 cut(s) 521
PspPPI RGGWCCY 1 cut(s) 521
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 3 cut(s) 219, 950, 990
RsaNI GTAC 3 cut(s) 218, 949, 989
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 4 cut(s) 255, 306, 827, 896
SatI GCNGC 1 cut(s) 794
Sau3AI GATC 5 cut(s) 426, 469, 474, 814, 849
Sau96I GGNCC 1 cut(s) 521
ScaI AGTACT 1 cut(s) 950
SchI GAGTC 2 cut(s) 239, 270
SduI GDGCHC 2 cut(s) 113, 972
SfaNI GCATC 5 cut(s) 274, 625, 647, 648, 1014
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 613
Sse9I AATT 6 cut(s) 27, 129, 153, 311, 536, 662
SsiI CCGC 2 cut(s) 646, 847
SspI AATATT 1 cut(s) 751
SspMI CTAG 3 cut(s) 377, 614, 1062
StyI CCWWGG 3 cut(s) 61, 317, 918
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 602
TaqI TCGA 3 cut(s) 526, 579, 755
TasI AATT 6 cut(s) 27, 129, 153, 311, 536, 662
TatI WGTACW 1 cut(s) 948
TfiI GAWTC 3 cut(s) 121, 576, 1069
Tru1I TTAA 4 cut(s) 255, 306, 827, 896
Tru9I TTAA 4 cut(s) 255, 306, 827, 896
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 1 cut(s) 793
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 6 cut(s) 180, 215, 546, 576, 592, 620
VpaK11BI GGWCC 1 cut(s) 521
XagI CCTNNNNNAGG 1 cut(s) 887
XceI RCATGY 1 cut(s) 864
XspI CTAG 3 cut(s) 377, 614, 1062
ZrmI AGTACT 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.