RchiOBHm_Chr2g0143771
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Reverse (-)
61421971 .. 61423709
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51385

Sequence Viewer

Length: 1065 bp
ATGGTGATTTCATACCTCATAAACTCATTTGGGTTTTCCCCAAAACTGGCTCTCTCTTTGTCCAATAAGCATAGGGTACGGTTTGATTCCCCAGAAAAACCAGACTCAGTTGTTAAGCTTCTCAAACACCATGGGTTCAATGGTACCCAGATATCCGAAATTGTTAAGAAACTACCAACCTTGCTTTTGTGCAATGCTGAGAAGACCCTTGAGCCCAAGCTCCAGTTTTTTGATTCTATTGGCCTTTCAGCCACCGCCCTTGCTTGGGTCGTCAGTTACAACCGACGCATTTTGGGTCAAAGTTTAGAGAGAAGTCTCCGACCGTGCTATGATATCATCAAAAGTCTACCTATCCCCGACAACATGGTGGCTGTTTTCTTGAAGAACTCGAACCGGGCATTTGGGGTCAAGATGCTTAGCAATCTTGTTCCCAATGTTTCAGTTCTTAGGGCAATTCAAGTGCCGGAATCCTGCATCTCCTTTTATGTTACCTATCATCCTCTTGTGCTGTCCCCTGAAACTAGCAAGTTTAAGGAAAGTGTAAACAAGATCATTAATCTCGGAATTCTGCCTCCGAGTTTTACTTTCATGAAGGCACTACAAGTCATCTCTCAGATGGATGCATCAAAGTGGAGACGAAAGACAGAGTTCTATAGGAAGTGCGGTTGGACTGAGGATGACTTTCTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTGTCAGAGGAGAAGTCTTCAAGTAAAATTGAGTTTCTTGTGAACAAAATGGGTTGGCAGCCTGCAGAAGTGGCTGACAGGCCTGATATTCTAACTCATAGTTTGGAGAAGTCTATCATACCTAGGTGTTCAGTTATTAGAGTTCTCCAATATAAGGGTTTGATGAAAAAGGGAGAACTTTCTCAAGCTACCATGCTGATAAACAGTAGGAAGCGCTTCTTGGATAGGTTTGTGACCAAATATCAGGATCAAGCACCTGAACTGTTGAGTATCTTTCAAGGGCAAATGTCTCTAGCAGAATTGGGTGTAGGATTTGAGGAAAGAGATGGAGTGAAACAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

354

Amino Acids

40.31

Weight (kDa)

9.61

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 38 - 184 2.9e-18 mTERF
mTERF PF02536 167 - 314 1.7e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 346
AciI CCGC 2 cut(s) 255, 663
AclWI GGATC 1 cut(s) 975
AcsI RAATTY 1 cut(s) 564
AfaI GTAC 2 cut(s) 78, 145
AfeI AGCGCT 1 cut(s) 935
AfiI CCNNNNNNNGG 4 cut(s) 46, 264, 265, 874
AgsI TTSAA 5 cut(s) 139, 382, 458, 741, 998
AjuI GAANNNNNNNTTGG 2 cut(s) 923, 955
AluBI AGCT 4 cut(s) 118, 220, 720, 908
AluI AGCT 4 cut(s) 118, 220, 720, 908
Alw26I GTCTC 3 cut(s) 320, 628, 1014
AlwI GGATC 1 cut(s) 975
Aor51HI AGCGCT 1 cut(s) 935
AoxI GGCC 2 cut(s) 241, 800
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 1 cut(s) 564
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 935
Asp718I GGTACC 1 cut(s) 143
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 1 cut(s) 936
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 1 cut(s) 16
AvrII CCTAGG 1 cut(s) 842
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 209, 729
BbvI GCAGC 1 cut(s) 790
BccI CCATC 2 cut(s) 610, 1040
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 320, 628, 1014
BfaI CTAG 3 cut(s) 522, 843, 1013
BfmI CTRYAG 2 cut(s) 652, 783
BfoI RGCGCY 1 cut(s) 937
BisI GCNGC 1 cut(s) 779
BlnI CCTAGG 1 cut(s) 842
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 780
Bme1390I CCNGG 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 4 cut(s) 402, 483, 610, 632
BpiI GAAGAC 2 cut(s) 209, 729
BpmI CTGGAG 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 230, 888
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 130, 842
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 264, 265, 874
Bse1I ACTGG 2 cut(s) 51, 223
Bse3DI GCAATG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 130, 842
BseGI GGATG 3 cut(s) 496, 625, 682
BseLI CCNNNNNNNGG 4 cut(s) 46, 264, 265, 874
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 4 cut(s) 120, 189, 626, 663
BseNI ACTGG 2 cut(s) 51, 223
BseRI GAGGAG 1 cut(s) 743
BseXI GCAGC 1 cut(s) 790
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 2 cut(s) 243, 802
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 394, 464
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 4 cut(s) 46, 264, 265, 874
BsmAI GTCTC 3 cut(s) 320, 628, 1014
BsmBI CGTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 2 cut(s) 243, 802
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 549, 967
Bsp1720I GCTNAGC 1 cut(s) 416
Bsp19I CCATGG 1 cut(s) 130
BspACI CCGC 2 cut(s) 255, 663
BspANI GGCC 2 cut(s) 243, 802
BspCNI CTCAG 4 cut(s) 119, 190, 625, 664
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 1 cut(s) 975
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 2 cut(s) 51, 223
BssECI CCNNGG 2 cut(s) 130, 842
BssMI GATC 2 cut(s) 549, 967
BssT1I CCWWGG 2 cut(s) 130, 842
Bst4CI ACNGT 4 cut(s) 81, 324, 926, 984
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 6 cut(s) 106, 198, 416, 446, 612, 672
BstDSI CCRYGG 1 cut(s) 130
BstF5I GGATG 3 cut(s) 496, 625, 682
BstH2I RGCGCY 1 cut(s) 937
BstHHI GCGC 1 cut(s) 936
BstKTI GATC 2 cut(s) 552, 970
BstMAI GTCTC 3 cut(s) 320, 628, 1014
BstMBI GATC 2 cut(s) 549, 967
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 791
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 2 cut(s) 652, 783
BstV1I GCAGC 1 cut(s) 790
BstV2I GAAGAC 2 cut(s) 209, 729
BsuRI GGCC 2 cut(s) 243, 802
BtgI CCRYGG 1 cut(s) 130
BtsCI GGATG 3 cut(s) 496, 625, 682
Cac8I GCNNGC 1 cut(s) 783
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 936
CseI GACGC 1 cut(s) 294
Csp6I GTAC 2 cut(s) 77, 144
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 5 cut(s) 131, 364, 589, 709, 913
CviQI GTAC 2 cut(s) 77, 144
DdeI CTNAG 6 cut(s) 106, 198, 416, 446, 612, 672
DpnI GATC 2 cut(s) 551, 969
DpnII GATC 2 cut(s) 549, 967
Eco130I CCWWGG 2 cut(s) 130, 842
Eco147I AGGCCT 1 cut(s) 802
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 2 cut(s) 153, 334
Eco47III AGCGCT 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 564
EcoRV GATATC 2 cut(s) 153, 334
EcoT14I CCWWGG 2 cut(s) 130, 842
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 130, 842
Esp3I CGTCTC 1 cut(s) 628
FaeI CATG 5 cut(s) 134, 367, 592, 712, 916
FalI AAGNNNNNCTT 2 cut(s) 923, 955
FaqI GGGAC 1 cut(s) 496
FatI CATG 5 cut(s) 130, 363, 588, 708, 912
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 779
FokI GGATG 3 cut(s) 483, 632, 689
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 779
FspBI CTAG 3 cut(s) 522, 843, 1013
GlaI GCGC 1 cut(s) 935
GluI GCNGC 1 cut(s) 779
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 937
HaeIII GGCC 2 cut(s) 243, 802
HapII CCGG 2 cut(s) 394, 464
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 936
Hin1II CATG 5 cut(s) 134, 367, 592, 712, 916
Hin6I GCGC 1 cut(s) 934
HinP1I GCGC 1 cut(s) 934
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 5 cut(s) 86, 104, 233, 467, 703
HpaII CCGG 2 cut(s) 394, 464
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 347, 544, 763
Hpy188I TCNGA 6 cut(s) 157, 320, 563, 576, 615, 727
Hpy188III TCNNGA 4 cut(s) 379, 409, 589, 965
Hpy8I GTNNAC 3 cut(s) 347, 544, 763
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 4 cut(s) 81, 324, 926, 984
HpyCH4V TGCA 4 cut(s) 192, 474, 623, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 791
HpyF3I CTNAG 6 cut(s) 106, 198, 416, 446, 612, 672
Hsp92II CATG 5 cut(s) 134, 367, 592, 712, 916
HspAI GCGC 1 cut(s) 934
KpnI GGTACC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 549, 967
LmnI GCTCC 1 cut(s) 225
Lsp1109I GCAGC 1 cut(s) 790
LweI GCATC 4 cut(s) 402, 483, 610, 632
MaeI CTAG 3 cut(s) 522, 843, 1013
MaeIII GTNAC 3 cut(s) 275, 487, 952
MalI GATC 2 cut(s) 551, 969
MboI GATC 2 cut(s) 549, 967
MboII GAAGA 3 cut(s) 214, 394, 729
MfeI CAATTG 1 cut(s) 1058
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 159, 453, 564, 747, 1019, 1058
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 2 cut(s) 343, 647
MnlI CCTC 6 cut(s) 26, 510, 582, 667, 721, 1030
Mph1103I ATGCAT 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 935
MseI TTAA 4 cut(s) 114, 165, 531, 555
MslI CAYNNNNRTG 2 cut(s) 628, 713
MspI CCGG 2 cut(s) 394, 464
MspR9I CCNGG 1 cut(s) 395
MunI CAATTG 1 cut(s) 1058
MwoI GCNNNNNNNGC 1 cut(s) 791
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 130
NdeII GATC 2 cut(s) 549, 967
NlaIII CATG 5 cut(s) 134, 367, 592, 712, 916
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 952
NsiI ATGCAT 1 cut(s) 625
PagI TCATGA 1 cut(s) 588
PceI AGGCCT 1 cut(s) 802
PdmI GAANNNNTTC 1 cut(s) 935
PfeI GAWTC 4 cut(s) 86, 233, 467, 703
PkrI GCNGC 1 cut(s) 780
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 555
PspN4I GGNNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 787
RsaI GTAC 2 cut(s) 78, 145
RsaNI GTAC 2 cut(s) 77, 144
RseI CAYNNNNRTG 2 cut(s) 628, 713
SaqAI TTAA 4 cut(s) 114, 165, 531, 555
SatI GCNGC 1 cut(s) 779
Sau3AI GATC 2 cut(s) 549, 967
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 4 cut(s) 402, 483, 610, 632
SfcI CTRYAG 2 cut(s) 652, 783
SmiMI CAYNNNNRTG 2 cut(s) 628, 713
SmlI CTYRAG 2 cut(s) 209, 903
SmoI CTYRAG 2 cut(s) 209, 903
Sse9I AATT 6 cut(s) 159, 453, 564, 747, 1019, 1058
SseBI AGGCCT 1 cut(s) 802
SsiI CCGC 2 cut(s) 255, 663
SspMI CTAG 3 cut(s) 522, 843, 1013
StuI AGGCCT 1 cut(s) 802
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 2 cut(s) 130, 842
TaaI ACNGT 4 cut(s) 81, 324, 926, 984
TaqI TCGA 1 cut(s) 389
TasI AATT 6 cut(s) 159, 453, 564, 747, 1019, 1058
TfiI GAWTC 4 cut(s) 86, 233, 467, 703
Tru1I TTAA 4 cut(s) 114, 165, 531, 555
Tru9I TTAA 4 cut(s) 114, 165, 531, 555
TseFI GTSAC 1 cut(s) 952
TseI GCWGC 1 cut(s) 778
Tsp45I GTSAC 1 cut(s) 952
TspDTI ATGAA 3 cut(s) 577, 605, 899
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 1 cut(s) 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaJI CCTAGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 935
XspI CTAG 3 cut(s) 522, 843, 1013
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.