RLG00000020071
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000263
Physical Location & Seq
Forward (+)
60754512 .. 60757897
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020071

Sequence Viewer

Length: 612 bp
ATGGAGGGACGATGGAGGCGCTGCTGGGTTGATGTTGCGACGGCGGCGGTCTTGCAGGGTATGGAAACGAAGGGCAAAACCCTAAATCCCAAATTGACGGAGGGAACTGGAGCACTAAATTGTCGGCTTCAATTTCAGCGGAGAAAGCATTCGAATTGGGTGCCAGAAGCGTCATTTCCTCTGTGGGTGTGTTCTCATTTGCTTGCACTGTCATTTGACTCTGAGAAGGTTAAGACAAATGTCGAGAAGGTCATCAGCATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCCTTGTATGTGATATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATAAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTTTAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCATGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAGTTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCAACGAAAGTGGTGGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

204

Amino Acids

23.37

Weight (kDa)

9.18

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 278
AciI CCGC 3 cut(s) 44, 47, 139
AcsI RAATTY 2 cut(s) 347, 575
AcuI CTGAAG 2 cut(s) 393, 406
AgsI TTSAA 2 cut(s) 131, 592
AhdI GACNNNNNGTC 1 cut(s) 274
AluBI AGCT 1 cut(s) 420
AluI AGCT 1 cut(s) 420
Alw21I GWGCWC 2 cut(s) 115, 477
Alw44I GTGCAC 1 cut(s) 473
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 21, 323
ApoI RAATTY 2 cut(s) 347, 575
Asp700I GAANNNNTTC 2 cut(s) 148, 491
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 115, 477
BbvI GCAGC 2 cut(s) 8, 335
BccI CCATC 2 cut(s) 6, 337
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BclI TGATCA 1 cut(s) 510
BfaI CTAG 1 cut(s) 569
BfoI RGCGCY 1 cut(s) 22
BisI GCNGC 3 cut(s) 22, 45, 324
BlsI GCNGC 3 cut(s) 23, 46, 325
BmeRI GACNNNNNGTC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 555
BoxI GACNNNNGTC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 213, 525
BseNI ACTGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 2 cut(s) 8, 335
BseYI CCCAGC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 160
BsiHKAI GWGCWC 2 cut(s) 115, 477
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 115, 477
Bsp143I GATC 1 cut(s) 510
BspACI CCGC 3 cut(s) 44, 47, 139
BspCNI CTCAG 2 cut(s) 214, 526
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 112
BssMI GATC 1 cut(s) 510
Bst4CI ACNGT 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 222, 534
BstEII GGTNACC 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 513
BstMBI GATC 1 cut(s) 510
BstMWI GCNNNNNNNGC 2 cut(s) 44, 145
BstPAI GACNNNNGTC 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 313
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 2 cut(s) 8, 335
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 204
CciI TCATGA 1 cut(s) 288
CfoI GCGC 1 cut(s) 21
CseI GACGC 1 cut(s) 159
CspCI CAANNNNNGTGG 1 cut(s) 580
CviAII CATG 4 cut(s) 259, 289, 409, 496
CviJI RGCY 5 cut(s) 127, 296, 420, 435, 572
CviKI_1 RGCY 5 cut(s) 127, 296, 420, 435, 572
DdeI CTNAG 2 cut(s) 222, 534
DpnI GATC 1 cut(s) 512
DpnII GATC 1 cut(s) 510
DraI TTTAAA 1 cut(s) 429
DriI GACNNNNNGTC 1 cut(s) 274
Eam1105I GACNNNNNGTC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 309
Eco57I CTGAAG 2 cut(s) 393, 406
Eco91I GGTNACC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 313
EcoRV GATATC 1 cut(s) 309
FaeI CATG 4 cut(s) 262, 292, 412, 499
FaqI GGGAC 1 cut(s) 21
FatI CATG 4 cut(s) 258, 288, 408, 495
FbaI TGATCA 1 cut(s) 510
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 3 cut(s) 22, 45, 324
Fsp4HI GCNGC 3 cut(s) 22, 45, 324
FspBI CTAG 1 cut(s) 569
GlaI GCGC 1 cut(s) 20
GluI GCNGC 3 cut(s) 22, 45, 324
GsaI CCCAGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 22
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 21
Hin1II CATG 4 cut(s) 262, 292, 412, 499
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 3 cut(s) 218, 403, 588
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 279, 475
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 2 cut(s) 244, 289
Hpy8I GTNNAC 2 cut(s) 279, 475
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 4 cut(s) 64, 220, 241, 282
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 55, 206, 323, 475, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 145
HpyF3I CTNAG 2 cut(s) 222, 534
Hsp92II CATG 4 cut(s) 262, 292, 412, 499
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 6 cut(s) 10, 41, 93, 177, 539, 546
Lsp1109I GCAGC 2 cut(s) 8, 335
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 569
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 512
MboI GATC 1 cut(s) 510
MboII GAAGA 3 cut(s) 386, 461, 533
MhlI GDGCHC 2 cut(s) 115, 477
MluCI AATT 8 cut(s) 92, 118, 131, 154, 347, 438, 462, 575
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 347
MnlI CCTC 3 cut(s) 9, 94, 189
MroXI GAANNNNTTC 2 cut(s) 148, 491
MseI TTAA 3 cut(s) 231, 428, 437
MslI CAYNNNNRTG 2 cut(s) 257, 413
MspA1I CMGCKG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 44, 145
NdeII GATC 1 cut(s) 510
NlaIII CATG 4 cut(s) 262, 292, 412, 499
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 152
PagI TCATGA 1 cut(s) 288
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 2 cut(s) 148, 491
PfeI GAWTC 2 cut(s) 403, 588
PkrI GCNGC 3 cut(s) 23, 46, 325
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 239
PsiI TTATAA 1 cut(s) 354
PspEI GGTNACC 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 162
RseI CAYNNNNRTG 2 cut(s) 257, 413
SaqAI TTAA 3 cut(s) 231, 428, 437
SatI GCNGC 3 cut(s) 22, 45, 324
Sau3AI GATC 1 cut(s) 510
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 2 cut(s) 115, 477
SetI ASST 5 cut(s) 231, 252, 422, 506, 535
SfaNI GCATC 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 257, 413
Sse9I AATT 8 cut(s) 92, 118, 131, 154, 347, 438, 462, 575
SsiI CCGC 3 cut(s) 44, 47, 139
SspMI CTAG 1 cut(s) 569
TaaI ACNGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 152, 243
TasI AATT 8 cut(s) 92, 118, 131, 154, 347, 438, 462, 575
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 2 cut(s) 403, 588
Tru1I TTAA 3 cut(s) 231, 428, 437
Tru9I TTAA 3 cut(s) 231, 428, 437
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 21, 323
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 4 cut(s) 277, 305, 484, 534
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 213
VneI GTGCAC 1 cut(s) 473
XapI RAATTY 2 cut(s) 347, 575
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 2 cut(s) 148, 491
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.