MD09G1189800.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000263
Physical Location & Seq
Reverse (-)
16582613 .. 16584472
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1189800.v1.1.491

Sequence Viewer

Length: 1230 bp
ATGCTCAATTCTTGTTGTAAAAGATTGCAATTAATGCTCGGAATTGTTGGTGATTCAGCGACCCATTTGAAAGTTTTCCAAAAAGAAGCTATTTTTCTCAGGTCATATTCATCGAAATCATCATTAGTTTCTGAAAAAGATACACTAGGAGAAAAATGTGGCTCTTTTACAGAGTCTTACCTTATGAACTCATGTGGGTTGTCCCAAAAACTCGCTGTTTCTGTGTCCAAGAAGGTACAATTTGATGCCCGAGAAAGACCGGATTCGGTTCTTAATCTTCTCAAACACCATGGATTCAGTAAAACCCACATCTCAGAACTTGTTAAGAAACGTCCAAAGTTGCTCTTAGCCAATGCTGAGAAGAACCTTGTCCCAAAGCTTGAGTTTTTCGCTTCTATTGGCATTTCAGGTACCGGCCTTGCTCACATGGTTTGTATCAGCCCGGTTGTTTTAGAACGAAGCATAGAGGGAAGTCTCATGCCTTGTTATCATATCATAAAAAGTTTACTTGTTCTCGATGACTACAAGCTTTCTCGTTTGTTTGCGAACATTCAGTGGGTAGGGCTGGCCAAAATGAGAAGCAACATTGCTCCCAACATTTCAGTTCTGAGAGCACTTGGAGTGCCAGAAACCTCAATCTCTTATTGGGTGTCACATCGTCCTTTTCTAATATCCCTTGAATCTGACAAGTTTAAGGAAAATGTCAAGAAGGTCACGAGTATGGGTGTCCCCCCTTCGTCTGCCTCATTTATGAAAGTGCTGTATGTGATTACTCGGGTGAATGAACCAGAATGGGCACAAAAGATGGAGCTTTATAAGAATTGGGGTTGGACTGAAGATGATTTCTTGTTGGCATTTAGAAAGAATCCTCAGTTTATGGAATTAACAGAGAAGAATTTTTCGAGTAAAATGGATTTTCTTGTGAACAAAATCGGTTGGCATCCCGCAGACGTGGCTGGAAGTTCAGTTGCTCTAAATTATAGTTTGGAAAAGTATATCATACCAAGGTGCTTAGTTATTAGAATTCTTTGGTCGAAAGGCTTGATATCAAAGGGAGAATTTTCTTTAGGTACCCTTGTCAGGAAACCGAAGCAGTACTTCTTGGATAGGCTTGTAATCAAATATCAAGAGCAAGTACCTGAATTACTTAACATCTTTGAAGGGAGATTGAGACTTGCAGAACTGGGCTTAGGATTTGAGCAAAAGGTGGACGGTGTGAAACAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

410

Amino Acids

46.33

Weight (kDa)

9.45

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 91 - 212 5.6e-17 mTERF
mTERF PF02536 192 - 367 1.3e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 816
Acc65I GGTACC 2 cut(s) 410, 1070
AccB1I GGYRCC 2 cut(s) 410, 1070
AciI CCGC 1 cut(s) 945
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 3 cut(s) 895, 1023, 1058
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 5 cut(s) 237, 412, 1072, 1097, 1137
AfiI CCNNNNNNNGG 1 cut(s) 1080
AgsI TTSAA 3 cut(s) 70, 680, 1160
AjiI CACGTC 1 cut(s) 952
AluBI AGCT 4 cut(s) 89, 379, 529, 811
AluI AGCT 4 cut(s) 89, 379, 529, 811
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 2 cut(s) 479, 1165
Ama87I CYCGRG 2 cut(s) 249, 774
AoxI GGCC 2 cut(s) 415, 567
ApoI RAATTY 3 cut(s) 895, 1023, 1058
AseI ATTAAT 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 74
Asp718I GGTACC 2 cut(s) 410, 1070
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 62, 790
AvaI CYCGRG 2 cut(s) 249, 774
BaeGI GKGCMC 1 cut(s) 799
BaeI ACNNNNGTAYC 2 cut(s) 1062, 1095
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 2 cut(s) 410, 1070
BauI CACGAG 1 cut(s) 715
Bbv12I GWGCWC 1 cut(s) 616
BccI CCATC 1 cut(s) 799
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 479, 1165
BfaI CTAG 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 1 cut(s) 443
BmeT110I CYCGRG 2 cut(s) 249, 774
BmgBI CACGTC 1 cut(s) 952
BmiI GGNNCC 2 cut(s) 412, 1072
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 1 cut(s) 1193
BmsI GCATC 2 cut(s) 235, 949
BmuI ACTGGG 1 cut(s) 1193
Bpu10I CCTNAGC 1 cut(s) 1189
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 289, 1004
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 1080
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 1 cut(s) 1188
Bse3DI GCAATG 1 cut(s) 585
BseDI CCNNGG 2 cut(s) 289, 1004
BseGI GGATG 1 cut(s) 940
BseLI CCNNNNNNNGG 1 cut(s) 1080
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 5 cut(s) 112, 327, 348, 599, 884
BseNI ACTGG 1 cut(s) 1188
BseSI GKGCMC 1 cut(s) 799
BshFI GGCC 2 cut(s) 417, 569
BshNI GGYRCC 2 cut(s) 410, 1070
BsiHKAI GWGCWC 1 cut(s) 616
BsiHKCI CYCGRG 2 cut(s) 249, 774
BsiSI CCGG 3 cut(s) 260, 414, 443
BslFI GGGAC 3 cut(s) 187, 356, 713
BslI CCNNNNNNNGG 1 cut(s) 1080
BsmAI GTCTC 2 cut(s) 479, 1165
BsmFI GGGAC 3 cut(s) 187, 356, 713
BsnI GGCC 2 cut(s) 417, 569
BsoBI CYCGRG 2 cut(s) 249, 774
Bsp1286I GDGCHC 2 cut(s) 616, 799
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 945
BspANI GGCC 2 cut(s) 417, 569
BspCNI CTCAG 5 cut(s) 111, 326, 349, 600, 883
BspLI GGNNCC 2 cut(s) 412, 1072
BspT107I GGYRCC 2 cut(s) 410, 1070
BsrDI GCAATG 1 cut(s) 585
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 1 cut(s) 1188
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 2 cut(s) 289, 1004
BssSI CACGAG 1 cut(s) 715
BssT1I CCWWGG 2 cut(s) 289, 1004
Bst2BI CACGAG 1 cut(s) 715
Bst4CI ACNGT 1 cut(s) 1214
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 8 cut(s) 98, 313, 346, 357, 608, 870, 1012, 1189
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 940
BstMAI GTCTC 2 cut(s) 479, 1165
BstMWI GCNNNNNNNGC 2 cut(s) 34, 953
BstSCI CCNGG 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 799
BsuRI GGCC 2 cut(s) 417, 569
BtgI CCRYGG 1 cut(s) 289
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 1 cut(s) 940
BtsIMutI CAGTG 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 413
Csp6I GTAC 5 cut(s) 236, 411, 1071, 1096, 1136
CviAII CATG 4 cut(s) 192, 290, 427, 478
CviQI GTAC 5 cut(s) 236, 411, 1071, 1096, 1136
DdeI CTNAG 8 cut(s) 98, 313, 346, 357, 608, 870, 1012, 1189
EaeI YGGCCR 1 cut(s) 567
Eco130I CCWWGG 2 cut(s) 289, 1004
Eco32I GATATC 1 cut(s) 1047
Eco57I CTGAAG 1 cut(s) 855
Eco88I CYCGRG 2 cut(s) 249, 774
EcoRI GAATTC 1 cut(s) 1023
EcoRV GATATC 1 cut(s) 1047
EcoT14I CCWWGG 2 cut(s) 289, 1004
ErhI CCWWGG 2 cut(s) 289, 1004
FaeI CATG 4 cut(s) 195, 293, 430, 481
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 1082, 1114
FaqI GGGAC 3 cut(s) 187, 356, 713
FatI CATG 4 cut(s) 191, 289, 426, 477
FauI CCCGC 1 cut(s) 952
FokI GGATG 1 cut(s) 927
FspBI CTAG 1 cut(s) 146
HaeIII GGCC 2 cut(s) 417, 569
HapII CCGG 3 cut(s) 260, 414, 443
Hin1II CATG 4 cut(s) 195, 293, 430, 481
HindIII AAGCTT 2 cut(s) 377, 527
HinfI GANTC 6 cut(s) 53, 173, 263, 294, 680, 865
HpaII CCGG 3 cut(s) 260, 414, 443
HphI GGTGA 2 cut(s) 62, 790
Hpy166II GTNNAC 3 cut(s) 506, 925, 1210
Hpy188I TCNGA 5 cut(s) 41, 133, 316, 609, 685
Hpy188III TCNNGA 5 cut(s) 515, 706, 715, 1081, 1127
Hpy8I GTNNAC 3 cut(s) 506, 925, 1210
HpyAV CCTTC 4 cut(s) 226, 703, 744, 1154
HpyCH4III ACNGT 1 cut(s) 1214
HpyCH4IV ACGT 2 cut(s) 331, 951
HpyCH4V TGCA 2 cut(s) 28, 1178
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 953
HpyF3I CTNAG 8 cut(s) 98, 313, 346, 357, 608, 870, 1012, 1189
HpySE526I ACGT 2 cut(s) 331, 951
Hsp92II CATG 4 cut(s) 195, 293, 430, 481
KpnI GGTACC 2 cut(s) 414, 1074
LmnI GCTCC 2 cut(s) 595, 808
LweI GCATC 2 cut(s) 235, 949
MaeI CTAG 1 cut(s) 146
MaeII ACGT 2 cut(s) 331, 951
MaeIII GTNAC 2 cut(s) 651, 712
MboII GAAGA 4 cut(s) 269, 373, 848, 904
MhlI GDGCHC 2 cut(s) 616, 799
MlsI TGGCCA 1 cut(s) 569
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 809
MnlI CCTC 4 cut(s) 460, 643, 754, 879
Mox20I TGGCCA 1 cut(s) 569
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 569
MseI TTAA 6 cut(s) 32, 273, 324, 693, 884, 1149
MslI CAYNNNNRTG 1 cut(s) 719
Msp20I TGGCCA 1 cut(s) 569
MspI CCGG 3 cut(s) 260, 414, 443
MspR9I CCNGG 1 cut(s) 443
MwoI GCNNNNNNNGC 2 cut(s) 34, 953
NciI CCSGG 1 cut(s) 443
NcoI CCATGG 1 cut(s) 289
NlaIII CATG 4 cut(s) 195, 293, 430, 481
NlaIV GGNNCC 2 cut(s) 412, 1072
NmuCI GTSAC 2 cut(s) 651, 712
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 5 cut(s) 53, 263, 294, 680, 865
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 32
PsiI TTATAA 1 cut(s) 816
PspN4I GGNNCC 2 cut(s) 412, 1072
RsaI GTAC 5 cut(s) 237, 412, 1072, 1097, 1137
RsaNI GTAC 5 cut(s) 236, 411, 1071, 1096, 1136
RseI CAYNNNNRTG 1 cut(s) 719
SaqAI TTAA 6 cut(s) 32, 273, 324, 693, 884, 1149
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 2 cut(s) 616, 799
SfaNI GCATC 2 cut(s) 235, 949
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SsiI CCGC 1 cut(s) 945
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 2 cut(s) 289, 1004
TaaI ACNGT 1 cut(s) 1214
TaiI ACGT 2 cut(s) 334, 954
TaqI TCGA 4 cut(s) 113, 516, 902, 1034
TatI WGTACW 1 cut(s) 1095
TfiI GAWTC 5 cut(s) 53, 263, 294, 680, 865
Tru1I TTAA 6 cut(s) 32, 273, 324, 693, 884, 1149
Tru9I TTAA 6 cut(s) 32, 273, 324, 693, 884, 1149
TscAI CASTG 1 cut(s) 560
TseFI GTSAC 2 cut(s) 651, 712
Tsp45I GTSAC 2 cut(s) 651, 712
TspDTI ATGAA 4 cut(s) 99, 200, 767, 798
TspRI CASTG 1 cut(s) 560
VspI ATTAAT 1 cut(s) 32
XapI RAATTY 3 cut(s) 895, 1023, 1058
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 146
ZrmI AGTACT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.