RchiOBHm_Chr2g0144231
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000263
Physical Location & Seq
Forward (+)
61834994 .. 61835500
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51421

Sequence Viewer

Length: 507 bp
ATGGAATTCGACCCTTCATCTGCCACATTCATGAAAGCACTGTATGTGATATCAGTGACGGATACATTGAAATGGGAACAGAAGATGAAATTTTATAGCAAGTGGGGTTGGACTGAAGATGATGTGTTGTTAGCATTTAGAAGGAGTCCCTTGTTTATGTCCTTCAGTGAGAAGATTATATCCAGTAAAATGGATTTTTATGTGAATACAATGGGTTGCCAGCCCTCAGATGTGGTTGGATGTCCAGATGTTCTAACTTACAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTTATCAGACTTCTCCAGTTAGAGGGCTTAATCGCAAAGGAAGATGTATCTATACTTACCATTCTGCAGAAAAGTGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATCAAGAGCAAGTACCTGAATTGCTGACATCTTACAAGGAAAAAATCAGTCTTGCAAAGATTGGCTTAGGATTAGATGAAAGAGGTGGAGTGAAACAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

7.61

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 21 - 127 8e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21150 AT1G21150 AT1G21150
fragaria_vesca FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 5, 89
AcuI CTGAAG 2 cut(s) 135, 148
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
ApoI RAATTY 2 cut(s) 5, 89
Asp700I GAANNNNTTC 1 cut(s) 377
AspA2I CCTAGG 1 cut(s) 284
AvrII CCTAGG 1 cut(s) 284
BciVI GTATCC 1 cut(s) 55
BclI TGATCA 1 cut(s) 396
BfaI CTAG 2 cut(s) 285, 505
BfmI CTRYAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 55
BlnI CCTAGG 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 183, 310
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 183, 310
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 183, 310
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 42, 263
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 226, 469
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 190
BsuI GTATCC 1 cut(s) 55
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 38, 60, 172
Cac8I GCNNGC 1 cut(s) 221
CciI TCATGA 1 cut(s) 30
Csp6I GTAC 1 cut(s) 416
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 223, 321, 468
CviKI_1 RGCY 3 cut(s) 223, 321, 468
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 2 cut(s) 226, 469
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 284
Eco32I GATATC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 135, 148
EcoRI GAATTC 1 cut(s) 5
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 34
FaiI YATR 8 cut(s) 32, 45, 96, 158, 179, 201, 281, 347
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 452, 484
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 396
FokI GGATG 1 cut(s) 252
FspBI CTAG 2 cut(s) 285, 505
GsuI CTGGAG 1 cut(s) 293
Hin1II CATG 1 cut(s) 34
HinfI GANTC 2 cut(s) 145, 276
Hpy188I TCNGA 2 cut(s) 229, 302
Hpy188III TCNNGA 3 cut(s) 31, 245, 407
HpyAV CCTTC 3 cut(s) 24, 135, 172
HpyCH4III ACNGT 2 cut(s) 42, 263
HpyCH4V TGCA 2 cut(s) 361, 458
HpyF3I CTNAG 2 cut(s) 226, 469
Hsp92II CATG 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 1 cut(s) 396
LpnPI CCDG 5 cut(s) 196, 233, 258, 323, 432
MaeI CTAG 2 cut(s) 285, 505
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 4 cut(s) 94, 128, 184, 347
MluCI AATT 3 cut(s) 5, 89, 422
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 2 cut(s) 89, 217
MnlI CCTC 3 cut(s) 235, 310, 479
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 29, 70
NdeII GATC 1 cut(s) 396
NlaIII CATG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 55
PagI TCATGA 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 276
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PstI CTGCAG 1 cut(s) 363
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 2 cut(s) 29, 70
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 1 cut(s) 396
SchI GAGTC 1 cut(s) 154
SetI ASST 5 cut(s) 286, 290, 392, 421, 490
SfcI CTRYAG 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 29, 70
Sse9I AATT 3 cut(s) 5, 89, 422
SspMI CTAG 2 cut(s) 285, 505
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 42, 263
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 5, 89, 422
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 3 cut(s) 45, 60, 172
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 5 cut(s) 6, 19, 47, 101, 495
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 3 cut(s) 45, 60, 172
XapI RAATTY 2 cut(s) 5, 89
XmaJI CCTAGG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 2 cut(s) 285, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.