Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000263

Physical Location & Seq

Genomic Coordinates Forward (+)

66054795 .. 66055286

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG457100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGATTTGACCCTTCGTCTACTACATTCATGAAAGCTTTGTATGTGGTATCGGTGACCAATGCAGCAAAGTGGAAACACAAGATGGAATTTTATGAGAAGTGGGGTTGGACTGAAGATGATGTGTTGTTGGCATTTAGAAAGAATCCCATGTTTATGAGCTTCAGTGTGAAGAATATTTCAGCTAAAATGGATTTTCTTTTGAATAAAATGGGTTGCCAGCCTGCAGATCTGGCTGCACGTCCAGATATTCTGACTTATAGTTTGGAGAAGCGAATCATACCTAGGTGTTCAGTCATCAGATTTCTCCAGTCAAAGGGCTTAATTGTCAAGGAAGATTTATATATAATTAGCATTGTGCACAAAAACGAGAAGTGGTTCTTGGAAAGGTTTGTGATCAAATATGAAGAACAAGCACCTGAATTGCAGAGCATCTTACAGGGGAAAATGGGTCTAGCCGAATTTGGTTTAGGATTCGACGAAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

163

Amino Acids

18.85

Weight (kDa)

8.46

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	21 - 127	1.4e-16	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21150 AT1G21150 AT1G21150
fragaria_vesca	FvH4_4g17900 FvH4_6g26110 FvH4_6g33880 FvH4_6g33900 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34011 FvH4_6g34030 FvH4_6g34040 FvH4_6g34070 FvH4_6g34070 FvH4_7g12830
malus_domestica	MD09G1189800.v1.1 MD09G1189900.v1.1 MD09G1190000.v1.1 MD14G1088800.v1.1 MD14G1088900.v1.1 MD17G1172900.v1.1
pyrus_communis	pycom07g03460 pycom09g10650 pycom14g07860
rosa_chinensis	RchiOBHm_Chr1g0351891 RchiOBHm_Chr1g0351901 RchiOBHm_Chr2g0143771 RchiOBHm_Chr2g0143861 RchiOBHm_Chr2g0143881 RchiOBHm_Chr2g0143941 RchiOBHm_Chr2g0143951 RchiOBHm_Chr2g0144081 RchiOBHm_Chr2g0144091 RchiOBHm_Chr2g0144211 RchiOBHm_Chr2g0144231 RchiOBHm_Chr2g0144241 RchiOBHm_Chr2g0144291 RchiOBHm_Chr2g0144301 RchiOBHm_Chr2g0144311 RchiOBHm_Chr2g0144331 RchiOBHm_Chr2g0144341 RchiOBHm_Chr4g0422021 RchiOBHm_Chr4g0422031
rosa_laevigata	RLG00000007639 RLG00000020063 RLG00000020071 RLG00000020072 RLG00000020074
rosa_multiflora	Rmu_co8214640.1_g000001 Rmu_co8471033.1_g000001 Rmu_sc0000789.1_g000002 Rmu_sc0001321.1_g000001 Rmu_sc0004340.1_g000001 Rmu_sc0004897.1_g000001 Rmu_sc0007105.1_g000005 Rmu_sc0009498.1_g000001 Rmu_sc0009498.1_g000002 Rmu_sc0019136.1_g000001 Rmu_sc0020327.1_g000002 Rmu_sc0020327.1_g000003 Rmu_sc0022905.1_g000001 Rmu_sc0032602.1_g000003 Rmu_sc0032602.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101380 Rroxscaffold_2G00101390 Rroxscaffold_2G00101400 Rroxscaffold_2G00101410 Rroxscaffold_2G00101480 Rroxscaffold_2G00101490 Rroxscaffold_4G00303470 Rroxscaffold_5G00364130 Rroxscaffold_5G00364150
rosa_rugosa	Rorug01G0222600 Rorug02G0384700 Rorug02G0384800 Rorug02G0385800 Rorug02G0385900 Rorug02G0386000 Rorug02G0386000 Rorug02G0386100 Rorug04G0176700 Rorug04G0176800.1
rosa_samantha	Rh1AG236500 Rh1AG236600 Rh1BG206900 Rh1CG221000 Rh1CG221100 Rh2BG444800 Rh2BG444900 Rh2BG446600 Rh2BG446700 Rh2BG447600 Rh2BG448100 Rh2BG448400 Rh2BG448500 Rh2BG448700 Rh2BG448800 Rh2CG423500 Rh2CG423600 Rh2CG424800 Rh2CG424900 Rh2CG425100 Rh2CG425200 Rh2DG455200 Rh2DG455300 Rh2DG456900 Rh2DG457000 Rh2DG457100 Rh2DG457600 Rh2DG457900 Rh2DG458000 Rh2DG458300 Rh2DG458400 Rh4AG236100 Rh4AG236200 Rh4BG239200 Rh4CG250900 Rh4CG251100
rosa_wichuraiana	Rw0G000400 Rw0G015990 Rw0G017200 Rw1G020580 Rw2G033310 Rw2G035630 Rw2G035640 Rw2G035790 Rw2G035800 Rw2G035840 Rw2G036160 Rw4G019830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	89, 461
AcuI	CTGAAG	2 cut(s)	135, 148
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	205
AhdI	GACNNNNNGTC	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	242
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	3 cut(s)	38, 162, 185
AluI	AGCT	3 cut(s)	38, 162, 185
Alw21I	GWGCWC	1 cut(s)	363
Alw44I	GTGCAC	1 cut(s)	359
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	65, 236
ApoI	RAATTY	2 cut(s)	89, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	247, 279
Asp700I	GAANNNNTTC	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	77, 223
BccI	CCATC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	396
BfaI	CTAG	2 cut(s)	285, 455
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	66, 237
BlnI	CCTAGG	1 cut(s)	284
BlsI	GCNGC	2 cut(s)	67, 238
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	77, 223
BsgI	GTGCAG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	2 cut(s)	229, 396
BspHI	TCATGA	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	2 cut(s)	229, 396
BssT1I	CCWWGG	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	221, 225
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	232, 399
BstMBI	GATC	2 cut(s)	229, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	77, 223
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	221, 225
CciI	TCATGA	1 cut(s)	30
CviAII	CATG	2 cut(s)	31, 151
CviJI	RGCY	7 cut(s)	38, 162, 185, 223, 236, 321, 458
CviKI_1	RGCY	7 cut(s)	38, 162, 185, 223, 236, 321, 458
DpnI	GATC	2 cut(s)	231, 398
DpnII	GATC	2 cut(s)	229, 396
DriI	GACNNNNNGTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	135, 148
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	34, 154
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	2 cut(s)	30, 150
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	66, 237
Fsp4HI	GCNGC	2 cut(s)	66, 237
FspBI	CTAG	2 cut(s)	285, 455
GluI	GCNGC	2 cut(s)	66, 237
GsuI	CTGGAG	1 cut(s)	293
Hin1II	CATG	2 cut(s)	34, 154
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	3 cut(s)	145, 276, 474
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	21, 361
Hpy188I	TCNGA	2 cut(s)	255, 302
Hpy188III	TCNNGA	2 cut(s)	31, 245
Hpy8I	GTNNAC	2 cut(s)	21, 361
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	65, 227, 239, 361, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	34, 154
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	229, 396
LpnPI	CCDG	7 cut(s)	218, 233, 237, 258, 323, 425, 432
Lsp1109I	GCAGC	2 cut(s)	77, 223
LweI	GCATC	1 cut(s)	441
MaeI	CTAG	2 cut(s)	285, 455
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	231, 398
MboI	GATC	2 cut(s)	229, 396
MboII	GAAGA	4 cut(s)	128, 184, 347, 419
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	5 cut(s)	89, 324, 348, 422, 461
MmeI	TCCRAC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	229, 396
NlaIII	CATG	2 cut(s)	34, 154
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	145, 276, 474
PkrI	GCNGC	2 cut(s)	67, 238
PspEI	GGTNACC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	2 cut(s)	66, 237
Sau3AI	GATC	2 cut(s)	229, 396
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	8 cut(s)	40, 164, 187, 244, 286, 290, 392, 421
SfaNI	GCATC	1 cut(s)	441
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	5 cut(s)	89, 324, 348, 422, 461
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	285, 455
StyI	CCWWGG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	477
TasI	AATT	5 cut(s)	89, 324, 348, 422, 461
TfiI	GAWTC	3 cut(s)	145, 276, 474
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	65, 236
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	19, 47, 420
TspRI	CASTG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	359
XapI	RAATTY	2 cut(s)	89, 461
XmaJI	CCTAGG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	2 cut(s)	285, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.