FvH4_4g17870

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
21839522 .. 21843601
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17870.t1

Sequence Viewer

Length: 993 bp
ATGGAAGAGCCCGGCCAGCTCAAGCGGGCCGTCATTGACGCCACGGCGGGCTTAATCGCCGGCGGGATTTCCCGGACAGTCACGTCGCCGCTCGACGTCATCAAGATTCGATTCCAGGTTCAGCTGGAGCCTACATCTTCATGGGCTTTGGTTCGCCGGAATTTGACCGAGCCGTCAAAGTATACCGGGATGTTTCAAGCTACTAGGGATATTTTCAGAGAGGAAGGCTTACCGGGTTTCTGGCGAGGCAATGTTCCAGCTCTACTTATGGTTATGCCATATACTGCGATACAGTTCACTGTACTACATAAATTGAAAACATTTGCGGCTGGTTCTTCCAAGTCAGAGGATCATGTTCATTTGAGTCCTTATTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCAGCCACTGTCGGATCATACCCGTTTGATCTTCTAAGAACCTTGCTAGCTTCACAGGGGGAACCTAAGGTGTATCCAACTATGAGGTCTGCATTTGTAGAAATAGTTAAAACTCGTGGGTTTCGAGGATTATATGCTGGATTGTCACCAACACTGGTTGAGATTGTTCCTTATGCGGGCTTGCAATTTGGTACCTATGACACATTTAAGCGCTGGACCATGATGTTGAACCAGTTTAGATCATCAAGTGAAGACTTATACGGTACAGAGAATAGTCTCACAAGCTTTCAGCTTTTCCTTTGTGGTCTGGCTGCCGGGACATGTGCCAAACTTGTCTGTCATCCACTTGATGTGGTCAAGAAAAGATTCCAGATTGAAGGACTACAGAGGCACCCAAGATATGGAGCTCGAGTAGAGCACCGTGCCTACAGCAATATGGTTGATGCCCTGCGACGAATAGTGCAGAAAGAAGGCTGGGCTGGTCTTTATAAGGGAATAGTTCCATCAACCGTCAAAGCTGCTCCTGCTGGTGCGGTGACATTTGTGGCTTATGAATATACATCAGACTGGTTAGAGTCTAGATTATAA

Protein Analysis

331

Amino Acids

36.6

Weight (kDa)

9.41

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 11 - 109 7.5e-23 Mitochondrial carrier protein
Mito_carr PF00153 121 - 208 4.2e-23 Mitochondrial carrier protein
Mito_carr PF00153 228 - 327 8.4e-25 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 894, 991
AasI GACNNNNNNGTC 2 cut(s) 82, 172
AatII GACGTC 1 cut(s) 99
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 596, 795
AccB7I CCANNNNNTGG 1 cut(s) 806
AccBSI CCGCTC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 182
AciI CCGC 7 cut(s) 25, 47, 63, 89, 326, 581, 938
AclWI GGATC 2 cut(s) 357, 427
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 160
AcyI GRCGYC 2 cut(s) 39, 96
AfaI GTAC 3 cut(s) 303, 598, 670
AfeI AGCGCT 1 cut(s) 617
AfiI CCNNNNNNNGG 2 cut(s) 581, 806
AflIII ACRYGT 1 cut(s) 725
AgsI TTSAA 4 cut(s) 197, 316, 634, 782
AjiI CACGTC 1 cut(s) 84
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 9 cut(s) 19, 124, 200, 260, 455, 690, 697, 812, 923
AluI AGCT 9 cut(s) 19, 124, 200, 260, 455, 690, 697, 812, 923
Alw21I GWGCWC 2 cut(s) 814, 825
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 2 cut(s) 357, 427
AlwNI CAGNNNCTG 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 813
Aor51HI AGCGCT 1 cut(s) 617
AoxI GGCC 2 cut(s) 13, 27
ApeKI GCWGC 3 cut(s) 407, 716, 923
ApoI RAATTY 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 618
AspS9I GGNCC 2 cut(s) 27, 621
AsuC2I CCSGG 5 cut(s) 12, 73, 187, 234, 721
AsuHPI GGTGA 2 cut(s) 543, 952
AsuNHI GCTAGC 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 813
AvaII GGWCC 1 cut(s) 621
AxyI CCTNAGG 1 cut(s) 471
BanI GGYRCC 2 cut(s) 596, 795
BanII GRGCYC 2 cut(s) 12, 814
BauI CACGAG 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 814, 825
BbvI GCAGC 3 cut(s) 419, 703, 910
BccI CCATC 1 cut(s) 916
BceAI ACGGC 3 cut(s) 14, 60, 157
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 5 cut(s) 12, 73, 187, 234, 721
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 3 cut(s) 204, 452, 984
BfmI CTRYAG 2 cut(s) 788, 832
BfoI RGCGCY 1 cut(s) 619
BfuAI ACCTGC 1 cut(s) 389
BfuI GTATCC 1 cut(s) 489
BisI GCNGC 5 cut(s) 89, 327, 408, 717, 924
BlsI GCNGC 5 cut(s) 90, 328, 409, 718, 925
Bme1390I CCNGG 6 cut(s) 12, 73, 116, 187, 234, 721
Bme18I GGWCC 1 cut(s) 621
BmeT110I CYCGRG 1 cut(s) 813
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 27, 621
BmiI GGNNCC 4 cut(s) 129, 468, 598, 797
BmrFI CCNGG 6 cut(s) 12, 73, 116, 187, 234, 721
BmsI GCATC 1 cut(s) 838
BmtI GCTAGC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 5
BpuMI CCSGG 5 cut(s) 12, 73, 187, 234, 721
BsaHI GRCGYC 2 cut(s) 39, 96
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 2 cut(s) 581, 806
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 3 cut(s) 564, 637, 977
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 195, 745
BseLI CCNNNNNNNGG 2 cut(s) 581, 806
BseMI GCAATG 1 cut(s) 256
BseNI ACTGG 3 cut(s) 564, 637, 977
BseXI GCAGC 3 cut(s) 419, 703, 910
BseYI CCCAGC 1 cut(s) 879
BsgI GTGCAG 2 cut(s) 426, 887
BshFI GGCC 2 cut(s) 15, 29
BshNI GGYRCC 2 cut(s) 596, 795
BsiHKAI GWGCWC 2 cut(s) 814, 825
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 7 cut(s) 12, 60, 73, 157, 186, 233, 720
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 2 cut(s) 581, 806
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 2 cut(s) 15, 29
BsoBI CYCGRG 1 cut(s) 813
Bsp1286I GDGCHC 3 cut(s) 12, 814, 825
Bsp143I GATC 4 cut(s) 349, 419, 433, 644
BspACI CCGC 7 cut(s) 25, 47, 63, 89, 326, 581, 938
BspANI GGCC 2 cut(s) 15, 29
BspLI GGNNCC 4 cut(s) 129, 468, 598, 797
BspMI ACCTGC 1 cut(s) 389
BspOI GCTAGC 1 cut(s) 455
BspPI GGATC 2 cut(s) 357, 427
BspT107I GGYRCC 2 cut(s) 596, 795
BsrBI CCGCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 3 cut(s) 564, 637, 977
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 4 cut(s) 349, 419, 433, 644
BssNAI GTATAC 1 cut(s) 183
BssNI GRCGYC 2 cut(s) 39, 96
BssSI CACGAG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 7 cut(s) 79, 294, 301, 415, 668, 827, 916
BstACI GRCGYC 2 cut(s) 39, 96
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 7 cut(s) 17, 27, 49, 61, 453, 583, 587
BstDEI CTNAG 2 cut(s) 440, 471
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 195, 745
BstH2I RGCGCY 1 cut(s) 619
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 4 cut(s) 352, 422, 436, 647
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 4 cut(s) 349, 419, 433, 644
BstMWI GCNNNNNNNGC 3 cut(s) 16, 404, 929
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 729
BstSCI CCNGG 6 cut(s) 10, 71, 114, 185, 232, 719
BstSFI CTRYAG 2 cut(s) 788, 832
BstV1I GCAGC 3 cut(s) 419, 703, 910
BstV2I GAAGAC 1 cut(s) 663
BstZ17I GTATAC 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 2 cut(s) 15, 29
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 2 cut(s) 195, 745
BtsIMutI CAGTG 4 cut(s) 297, 391, 411, 557
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 7 cut(s) 17, 27, 49, 61, 453, 583, 587
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 1 cut(s) 618
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 27, 621
CseI GACGC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 302, 597, 669
CviAII CATG 4 cut(s) 141, 353, 625, 726
CviQI GTAC 3 cut(s) 302, 597, 669
DdeI CTNAG 2 cut(s) 440, 471
DpnI GATC 4 cut(s) 351, 421, 435, 646
DpnII GATC 4 cut(s) 349, 419, 433, 644
DrdI GACNNNNNNGTC 2 cut(s) 82, 172
DseDI GACNNNNNNGTC 2 cut(s) 82, 172
EaeI YGGCCR 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 812
Eco24I GRGCYC 2 cut(s) 12, 814
Eco47I GGWCC 1 cut(s) 621
Eco47III AGCGCT 1 cut(s) 617
Eco53kI GAGCTC 1 cut(s) 812
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 813
EcoICRI GAGCTC 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 12, 814
FaeI CATG 4 cut(s) 144, 356, 628, 729
FaqI GGGAC 1 cut(s) 736
FatI CATG 4 cut(s) 140, 352, 624, 725
FauI CCCGC 4 cut(s) 18, 40, 56, 574
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 5 cut(s) 89, 327, 408, 717, 924
FokI GGATG 2 cut(s) 202, 732
FriOI GRGCYC 2 cut(s) 12, 814
Fsp4HI GCNGC 5 cut(s) 89, 327, 408, 717, 924
FspBI CTAG 3 cut(s) 204, 452, 984
GlaI GCGC 1 cut(s) 617
GluI GCNGC 5 cut(s) 89, 327, 408, 717, 924
GsaI CCCAGC 1 cut(s) 883
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 619
HaeIII GGCC 2 cut(s) 15, 29
HapII CCGG 7 cut(s) 12, 60, 73, 157, 186, 233, 720
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 618
Hin1I GRCGYC 2 cut(s) 39, 96
Hin1II CATG 4 cut(s) 144, 356, 628, 729
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 688
HinfI GANTC 5 cut(s) 106, 111, 364, 771, 980
HpaII CCGG 7 cut(s) 12, 60, 73, 157, 186, 233, 720
HphI GGTGA 2 cut(s) 543, 952
Hpy166II GTNNAC 2 cut(s) 183, 297
Hpy188I TCNGA 4 cut(s) 218, 346, 419, 970
Hpy188III TCNNGA 4 cut(s) 103, 763, 775, 984
Hpy8I GTNNAC 2 cut(s) 183, 297
Hpy99I CGWCG 3 cut(s) 88, 98, 861
HpyAV CCTTC 3 cut(s) 218, 776, 869
HpyCH4III ACNGT 7 cut(s) 79, 294, 301, 415, 668, 827, 916
HpyCH4IV ACGT 2 cut(s) 83, 96
HpyCH4V TGCA 4 cut(s) 407, 497, 589, 868
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 404, 929
HpyF3I CTNAG 2 cut(s) 440, 471
HpySE526I ACGT 2 cut(s) 83, 96
Hsp92I GRCGYC 2 cut(s) 39, 96
Hsp92II CATG 4 cut(s) 144, 356, 628, 729
HspAI GCGC 1 cut(s) 616
KpnI GGTACC 1 cut(s) 600
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 4 cut(s) 349, 419, 433, 644
LmnI GCTCC 4 cut(s) 127, 389, 809, 931
Lsp1109I GCAGC 3 cut(s) 419, 703, 910
LweI GCATC 1 cut(s) 838
MaeI CTAG 3 cut(s) 204, 452, 984
MaeII ACGT 2 cut(s) 83, 96
MaeIII GTNAC 3 cut(s) 79, 549, 940
MalI GATC 4 cut(s) 351, 421, 435, 646
MbiI CCGCTC 1 cut(s) 91
MboI GATC 4 cut(s) 349, 419, 433, 644
MboII GAAGA 5 cut(s) 17, 129, 327, 428, 668
MhlI GDGCHC 3 cut(s) 12, 814, 825
MluCI AATT 3 cut(s) 160, 311, 590
MlyI GAGTC 2 cut(s) 373, 989
MmeI TCCRAC 2 cut(s) 397, 506
MnlI CCTC 6 cut(s) 214, 239, 340, 483, 524, 786
MreI CGCCGGCG 1 cut(s) 59
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 770
MseI TTAA 3 cut(s) 53, 513, 612
MslI CAYNNNNRTG 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 7 cut(s) 12, 60, 73, 157, 186, 233, 720
MspR9I CCNGG 6 cut(s) 12, 73, 116, 187, 234, 721
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 16, 404, 929
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 5 cut(s) 12, 73, 187, 234, 721
NdeII GATC 4 cut(s) 349, 419, 433, 644
NgoMIV GCCGGC 1 cut(s) 59
NheI GCTAGC 1 cut(s) 451
NlaIII CATG 4 cut(s) 144, 356, 628, 729
NlaIV GGNNCC 4 cut(s) 129, 468, 598, 797
NmuCI GTSAC 3 cut(s) 79, 549, 940
NspI RCATGY 1 cut(s) 729
PaeR7I CTCGAG 1 cut(s) 813
PciI ACATGT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 526
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 770
PfeI GAWTC 3 cut(s) 106, 111, 771
PflMI CCANNNNNTGG 1 cut(s) 806
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 5 cut(s) 90, 328, 409, 718, 925
PleI GAGTC 2 cut(s) 372, 988
PpsI GAGTC 2 cut(s) 372, 988
PscI ACATGT 1 cut(s) 725
PsiI TTATAA 2 cut(s) 894, 991
Psp124BI GAGCTC 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 129, 468, 598, 797
PspPI GGNCC 2 cut(s) 27, 621
PspXI VCTCGAGB 1 cut(s) 813
PstNI CAGNNNCTG 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 3 cut(s) 303, 598, 670
RsaNI GTAC 3 cut(s) 302, 597, 669
RseI CAYNNNNRTG 1 cut(s) 139
SacI GAGCTC 1 cut(s) 814
SaqAI TTAA 3 cut(s) 53, 513, 612
SatI GCNGC 5 cut(s) 89, 327, 408, 717, 924
Sau3AI GATC 4 cut(s) 349, 419, 433, 644
Sau96I GGNCC 2 cut(s) 27, 621
SchI GAGTC 2 cut(s) 373, 989
ScrFI CCNGG 6 cut(s) 12, 73, 116, 187, 234, 721
SduI GDGCHC 3 cut(s) 12, 814, 825
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 2 cut(s) 788, 832
Sfr274I CTCGAG 1 cut(s) 813
SgrAI CRCCGGYG 1 cut(s) 59
SinI GGWCC 1 cut(s) 621
SlaI CTCGAG 1 cut(s) 813
SmiMI CAYNNNNRTG 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 20, 813
SmoI CTYRAG 2 cut(s) 20, 813
Sse9I AATT 3 cut(s) 160, 311, 590
SsiI CCGC 7 cut(s) 25, 47, 63, 89, 326, 581, 938
SspMI CTAG 3 cut(s) 204, 452, 984
SstI GAGCTC 1 cut(s) 814
StyD4I CCNGG 6 cut(s) 10, 71, 114, 185, 232, 719
TaaI ACNGT 7 cut(s) 79, 294, 301, 415, 668, 827, 916
TaiI ACGT 2 cut(s) 86, 99
TaqI TCGA 4 cut(s) 93, 109, 529, 814
TaqII GACCGA 1 cut(s) 182
TasI AATT 3 cut(s) 160, 311, 590
TatI WGTACW 1 cut(s) 301
TauI GCSGC 2 cut(s) 91, 329
TfiI GAWTC 3 cut(s) 106, 111, 771
Tru1I TTAA 3 cut(s) 53, 513, 612
Tru9I TTAA 3 cut(s) 53, 513, 612
TscAI CASTG 4 cut(s) 304, 391, 418, 564
TseFI GTSAC 3 cut(s) 79, 549, 940
TseI GCWGC 3 cut(s) 407, 716, 923
Tsp45I GTSAC 3 cut(s) 79, 549, 940
TspDTI ATGAA 3 cut(s) 129, 347, 972
TspRI CASTG 4 cut(s) 304, 391, 418, 564
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 1 cut(s) 729
XhoI CTCGAG 1 cut(s) 813
XmiI GTMKAC 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 770
XspI CTAG 3 cut(s) 204, 452, 984
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.