AT3G22430

BEST Arabidopsis thaliana protein match is XS domain-containing protein XS zinc finger domain-containing protein-related (TAIR AT5G23570.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008379
Physical Location & Seq
Forward (+)
7953260 .. 7958142
4883 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22430.1

Sequence Viewer

Length: 1533 bp
ATGGTCGGGAGCAACAACAACGCCAAGTCATCGACGAACAAGCCTCCAGCAACTTCCATCCCCACCGCTGCAGCTTCATCTTCACAGAACCATAAACCTCGTGTGAATTCAACTAACAACGATGGTGGAATCAGTAACAACAACAACAACAACAAGAAAGAAAGCAAGCCGATGATGATAGGTGTCCAGAAAACCGCCGATAAGAAACCACTGAAGCCTAATCCATCTCCTAAGCTAGCTCCGATCCCGAAACAATCTAATCCGAATCATCAAAATCAAACGGGTCCATCATCTTCACGACCAATGGCTCCGTTTCCTTTCCCTGATTCATCTCCCGCGCTAGGTCCTCCTCCTCAACCGACTTATGGATTCCATATGTTAGAGCGTCGCACAATTGTTCTCGCTGATGGTAGTGTCCGTTCCTACTTCGCTCTTCCTCCTAATTACATGGATTTTCCTCCTCAGAGTCGATTAGCTGGACCGGTATTTGGGAGATTCCCTCCTTTTTACCCGGAAGAGTTTCGAGATCAGCGGATGAAACGGAAGTATCCAGGTGAAGAAGAGATTGATAGGAGAGATGAGAGAGCTGAGATGATGAGACAGAGACAGCAGTTTATGCAGTATGCGAATCCTAATGATCACTCATTTATGGCTGGTACGAGTAGGGATGTTGGAGAGGATGTTAGAGCTGCTAAGCATATGAGGGTAGGATCAAGTAGGCATGACAATGGAGGTTTCCAGGTTGACCAGGTTGCTCTAAAGAAATCGTTTTTGGGTTTTGTTAAGCGAGTTTTCGAGGATCCGATGGAGAAGAAGAACTACTTGGAGAACGGGAGAAAAGGGCGGCTTCAGTGTCTCGTTTGTGGCAGGTCTTCTAAAGATGTCCAGGATACACATAGTTTGGTAATGCACACATACTGTTCTGATGATTCTAGCTCACGCGTGCATCATTTAGGCCTACACAAAGCTCTCTGTGTATTGATGGGATGGAATTTCTCAAAGGCTCCTGATAATTCAAAGGCATACCAGAATCTACCTGCTGATGAGGCAGCAATCAACCAAGCCCAGCTAATTATTTGGCCACCTCATGTTATTGTTCAGAATACCAGTACAGGGAAGGGAAAAGAAGGGCGCATGGAAGGCTTTGGAAACAAAACAATGGATAACAGAATTAGAGAACTAGGACTCACTGGTGGGAAATCGAAGTCGTTGTATGGAAGAGAGGGTCATTTGGGAATTACCCTGTTCAAGTTTGCTGGAGACGATTCAGGGCTCAGGGATGCTATGAGAATGGCAGAATATTTTGAGAAGATAAACCGTGGGCGTAAGAGTTGGGGGAGGGTACAGCCACTCACTCCAAGCAAAGATGATGAGAAAAACCCTGGTCTTGTCGAGGTTGATGGGAGGACGGGAGAGAAAAAGAGGATCTTTTATGGTTATCTCGCGACTGTAACGGACTTGGACAAAGTCGATGTGGAGACAAAGAAGAAAACCACAATCGAGAGCCTTAGAGAACTCACAAGAACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

510

Amino Acids

57.07

Weight (kDa)

9.7

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 356 - 488 7.2e-25 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 858, 1045
AccII CGCG 3 cut(s) 338, 942, 1445
AciI CCGC 5 cut(s) 66, 195, 336, 532, 844
AclWI GGATC 5 cut(s) 238, 718, 794, 807, 1433
AcoI YGGCCR 1 cut(s) 1079
AcsI RAATTY 2 cut(s) 106, 991
AcuI CTGAAG 2 cut(s) 233, 833
AfaI GTAC 3 cut(s) 658, 1111, 1344
AfiI CCNNNNNNNGG 4 cut(s) 341, 365, 488, 1113
AflIII ACRYGT 1 cut(s) 940
AgeI ACCGGT 1 cut(s) 481
AgsI TTSAA 3 cut(s) 111, 1017, 1249
AjnI CCWGG 5 cut(s) 550, 738, 747, 885, 1381
AjuI GAANNNNNNNTTGG 4 cut(s) 755, 787, 806, 838
AluBI AGCT 9 cut(s) 74, 235, 239, 476, 587, 689, 936, 968, 1069
AluI AGCT 9 cut(s) 74, 235, 239, 476, 587, 689, 936, 968, 1069
Alw26I GTCTC 5 cut(s) 592, 598, 860, 1254, 1472
AlwI GGATC 5 cut(s) 238, 718, 794, 807, 1433
AoxI GGCC 2 cut(s) 955, 1079
ApeKI GCWGC 4 cut(s) 68, 71, 689, 1049
ApoI RAATTY 2 cut(s) 106, 991
AsiGI ACCGGT 1 cut(s) 481
Asp700I GAANNNNTTC 1 cut(s) 519
AspLEI GCGC 2 cut(s) 340, 1134
AspS9I GGNCC 3 cut(s) 284, 344, 479
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 566
AsuNHI GCTAGC 1 cut(s) 235
AvaII GGWCC 3 cut(s) 284, 344, 479
BaeI ACNNNNGTAYC 2 cut(s) 530, 563
BalI TGGCCA 1 cut(s) 1081
BamHI GGATCC 1 cut(s) 799
BanII GRGCYC 1 cut(s) 1275
BarI GAAGNNNNNNTAC 2 cut(s) 803, 835
BauI CACGAG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 4 cut(s) 55, 83, 676, 1061
BccI CCATC 9 cut(s) 65, 116, 232, 295, 401, 799, 976, 981, 1394
BciT130I CCWGG 5 cut(s) 552, 740, 749, 887, 1383
BciVI GTATCC 2 cut(s) 558, 883
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 5 cut(s) 592, 598, 860, 1254, 1472
BfaI CTAG 4 cut(s) 236, 341, 933, 1181
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 858, 1045
BfuI GTATCC 2 cut(s) 558, 883
BisI GCNGC 5 cut(s) 69, 72, 690, 845, 1050
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 5 cut(s) 70, 73, 691, 846, 1051
Bme1390I CCNGG 6 cut(s) 512, 552, 740, 749, 887, 1383
Bme18I GGWCC 3 cut(s) 284, 344, 479
BmgT120I GGNCC 3 cut(s) 284, 344, 479
BmiI GGNNCC 4 cut(s) 285, 309, 801, 1005
BmrFI CCNGG 6 cut(s) 512, 552, 740, 749, 887, 1383
BmsI GCATC 2 cut(s) 955, 1270
BmtI GCTAGC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpmI CTGGAG 2 cut(s) 30, 1278
Bpu10I CCTNAGC 2 cut(s) 231, 1274
Bpu1102I GCTNAGC 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 1318, 1381
BsaWI WCCGGW 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 365, 488, 1113
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 1107, 1195
BseBI CCWGG 5 cut(s) 552, 740, 749, 887, 1383
BseDI CCNNGG 2 cut(s) 1318, 1381
BseGI GGATG 6 cut(s) 57, 540, 673, 685, 992, 1285
BseLI CCNNNNNNNGG 4 cut(s) 341, 365, 488, 1113
BseMII CTCAG 3 cut(s) 476, 579, 1288
BseNI ACTGG 2 cut(s) 1107, 1195
BseRI GAGGAG 3 cut(s) 339, 342, 450
BseXI GCAGC 4 cut(s) 55, 83, 676, 1061
BseYI CCCAGC 1 cut(s) 1065
Bsh1236I CGCG 3 cut(s) 338, 942, 1445
BshFI GGCC 2 cut(s) 957, 1081
BshTI ACCGGT 1 cut(s) 481
BsiSI CCGG 2 cut(s) 482, 512
BslI CCNNNNNNNGG 4 cut(s) 341, 365, 488, 1113
BsmAI GTCTC 5 cut(s) 592, 598, 860, 1254, 1472
BsmBI CGTCTC 1 cut(s) 1254
BsnI GGCC 2 cut(s) 957, 1081
Bsp1286I GDGCHC 1 cut(s) 1275
Bsp143I GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
Bsp1720I GCTNAGC 1 cut(s) 693
Bsp68I TCGCGA 1 cut(s) 1445
BspACI CCGC 5 cut(s) 66, 195, 336, 532, 844
BspANI GGCC 2 cut(s) 957, 1081
BspCNI CTCAG 3 cut(s) 475, 580, 1287
BspFNI CGCG 3 cut(s) 338, 942, 1445
BspLI GGNNCC 4 cut(s) 285, 309, 801, 1005
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 2 cut(s) 858, 1045
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 5 cut(s) 238, 718, 794, 807, 1433
BspQI GCTCTTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 2 cut(s) 1107, 1195
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 1318, 1381
BssMI GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst2UI CCWGG 5 cut(s) 552, 740, 749, 887, 1383
Bst4CI ACNGT 3 cut(s) 920, 1319, 1450
Bst6I CTCTTC 4 cut(s) 438, 510, 555, 1213
BstAPI GCANNNNNTGC 1 cut(s) 616
BstC8I GCNNGC 3 cut(s) 167, 237, 944
BstDEI CTNAG 6 cut(s) 231, 462, 588, 693, 1274, 1508
BstDSI CCRYGG 1 cut(s) 1318
BstF5I GGATG 6 cut(s) 57, 540, 673, 685, 992, 1285
BstFNI CGCG 3 cut(s) 338, 942, 1445
BstHHI GCGC 2 cut(s) 340, 1134
BstKTI GATC 6 cut(s) 246, 529, 640, 713, 802, 1428
BstMAI GTCTC 5 cut(s) 592, 598, 860, 1254, 1472
BstMBI GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
BstMWI GCNNNNNNNGC 3 cut(s) 616, 1046, 1140
BstNI CCWGG 5 cut(s) 552, 740, 749, 887, 1383
BstSCI CCNGG 6 cut(s) 510, 550, 738, 747, 885, 1381
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 3 cut(s) 338, 942, 1445
BstV1I GCAGC 4 cut(s) 55, 83, 676, 1061
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 2 cut(s) 799, 1425
BstYI RGATCY 2 cut(s) 799, 1425
BsuI GTATCC 2 cut(s) 558, 883
BsuRI GGCC 2 cut(s) 957, 1081
BtgI CCRYGG 1 cut(s) 1318
BtsCI GGATG 6 cut(s) 57, 540, 673, 685, 992, 1285
BtsIMutI CAGTG 3 cut(s) 209, 857, 1188
BtuMI TCGCGA 1 cut(s) 1445
BveI ACCTGC 2 cut(s) 858, 1045
Cac8I GCNNGC 3 cut(s) 167, 237, 944
CfoI GCGC 2 cut(s) 340, 1134
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 3 cut(s) 284, 344, 479
CseI GACGC 1 cut(s) 374
CsiI ACCWGGT 1 cut(s) 747
Csp6I GTAC 3 cut(s) 657, 1110, 1343
CspAI ACCGGT 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 4 cut(s) 448, 722, 1088, 1135
CviQI GTAC 3 cut(s) 657, 1110, 1343
DdeI CTNAG 6 cut(s) 231, 462, 588, 693, 1274, 1508
DpnI GATC 6 cut(s) 245, 528, 639, 712, 801, 1427
DpnII GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
EaeI YGGCCR 1 cut(s) 1079
Eam1104I CTCTTC 4 cut(s) 438, 510, 555, 1213
EarI CTCTTC 4 cut(s) 438, 510, 555, 1213
Eco147I AGGCCT 1 cut(s) 957
Eco24I GRGCYC 1 cut(s) 1275
Eco47I GGWCC 3 cut(s) 284, 344, 479
Eco57I CTGAAG 2 cut(s) 233, 833
EcoO109I RGGNCCY 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 5 cut(s) 550, 738, 747, 885, 1381
EcoT38I GRGCYC 1 cut(s) 1275
Esp3I CGTCTC 1 cut(s) 1254
FaeI CATG 4 cut(s) 451, 725, 1091, 1138
FalI AAGNNNNNCTT 6 cut(s) 806, 838, 831, 863, 1412, 1444
FatI CATG 4 cut(s) 447, 721, 1087, 1134
FauI CCCGC 1 cut(s) 343
FauNDI CATATG 2 cut(s) 375, 699
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 5 cut(s) 69, 72, 690, 845, 1050
FokI GGATG 6 cut(s) 44, 547, 680, 692, 999, 1292
FriOI GRGCYC 1 cut(s) 1275
Fsp4HI GCNGC 5 cut(s) 69, 72, 690, 845, 1050
FspBI CTAG 4 cut(s) 236, 341, 933, 1181
GlaI GCGC 2 cut(s) 339, 1133
GluI GCNGC 5 cut(s) 69, 72, 690, 845, 1050
GsaI CCCAGC 1 cut(s) 1069
GsuI CTGGAG 2 cut(s) 30, 1278
HaeIII GGCC 2 cut(s) 957, 1081
HapII CCGG 2 cut(s) 482, 512
HgaI GACGC 1 cut(s) 374
HhaI GCGC 2 cut(s) 340, 1134
Hin1II CATG 4 cut(s) 451, 725, 1091, 1138
Hin6I GCGC 2 cut(s) 338, 1132
HinP1I GCGC 2 cut(s) 338, 1132
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HpaII CCGG 2 cut(s) 482, 512
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 6 cut(s) 243, 264, 465, 804, 925, 1101
Hpy188III TCNNGA 8 cut(s) 7, 187, 247, 297, 524, 1007, 1444, 1501
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 2 cut(s) 37, 390
HpyAV CCTTC 3 cut(s) 1111, 1121, 1133
HpyCH4III ACNGT 3 cut(s) 920, 1319, 1450
HpyCH4V TGCA 4 cut(s) 71, 619, 910, 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 616, 1046, 1140
HpyF3I CTNAG 6 cut(s) 231, 462, 588, 693, 1274, 1508
Hsp92II CATG 4 cut(s) 451, 725, 1091, 1138
HspAI GCGC 2 cut(s) 338, 1132
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 4 cut(s) 9, 244, 313, 1009
Lsp1109I GCAGC 4 cut(s) 55, 83, 676, 1061
LweI GCATC 2 cut(s) 955, 1270
MabI ACCWGGT 1 cut(s) 747
MaeI CTAG 4 cut(s) 236, 341, 933, 1181
MaeIII GTNAC 2 cut(s) 134, 1450
MalI GATC 6 cut(s) 245, 528, 639, 712, 801, 1427
MboI GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 2 cut(s) 799, 1425
MhlI GDGCHC 1 cut(s) 1275
MlsI TGGCCA 1 cut(s) 1081
MluCI AATT 8 cut(s) 106, 393, 442, 991, 1012, 1071, 1170, 1236
MluI ACGCGT 1 cut(s) 940
MluNI TGGCCA 1 cut(s) 1081
MlyI GAGTC 2 cut(s) 475, 1179
MmeI TCCRAC 1 cut(s) 652
Mox20I TGGCCA 1 cut(s) 1081
MroXI GAANNNNTTC 1 cut(s) 519
MscI TGGCCA 1 cut(s) 1081
MseI TTAA 1 cut(s) 783
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 1081
MspA1I CMGCKG 2 cut(s) 68, 532
MspI CCGG 2 cut(s) 482, 512
MspR9I CCNGG 6 cut(s) 512, 552, 740, 749, 887, 1383
MunI CAATTG 1 cut(s) 393
MvaI CCWGG 5 cut(s) 552, 740, 749, 887, 1383
MvnI CGCG 3 cut(s) 338, 942, 1445
MwoI GCNNNNNNNGC 3 cut(s) 616, 1046, 1140
NciI CCSGG 1 cut(s) 512
NdeI CATATG 2 cut(s) 375, 699
NdeII GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 4 cut(s) 451, 725, 1091, 1138
NlaIV GGNNCC 4 cut(s) 285, 309, 801, 1005
NruI TCGCGA 1 cut(s) 1445
PceI AGGCCT 1 cut(s) 957
PciSI GCTCTTC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 9 cut(s) 129, 265, 326, 369, 495, 628, 929, 1030, 1265
PflFI GACNNNGTC 1 cut(s) 1466
PfoI TCCNGGA 1 cut(s) 885
PinAI ACCGGT 1 cut(s) 481
PkrI GCNGC 5 cut(s) 70, 73, 691, 846, 1051
PleI GAGTC 2 cut(s) 474, 1179
PpsI GAGTC 2 cut(s) 474, 1179
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 5 cut(s) 550, 738, 747, 885, 1381
PspFI CCCAGC 1 cut(s) 1065
PspGI CCWGG 5 cut(s) 550, 738, 747, 885, 1381
PspN4I GGNNCC 4 cut(s) 285, 309, 801, 1005
PspPI GGNCC 3 cut(s) 284, 344, 479
PspPPI RGGWCCY 1 cut(s) 344
PsrI GAACNNNNNNTAC 2 cut(s) 403, 435
PstI CTGCAG 1 cut(s) 73
PsuI RGATCY 2 cut(s) 799, 1425
PsyI GACNNNGTC 1 cut(s) 1466
RruI TCGCGA 1 cut(s) 1445
RsaI GTAC 3 cut(s) 658, 1111, 1344
RsaNI GTAC 3 cut(s) 657, 1110, 1343
RseI CAYNNNNRTG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 783
SatI GCNGC 5 cut(s) 69, 72, 690, 845, 1050
Sau3AI GATC 6 cut(s) 243, 526, 637, 710, 799, 1425
Sau96I GGNCC 3 cut(s) 284, 344, 479
SchI GAGTC 2 cut(s) 475, 1179
ScrFI CCNGG 6 cut(s) 512, 552, 740, 749, 887, 1383
SduI GDGCHC 1 cut(s) 1275
SexAI ACCWGGT 1 cut(s) 747
SfaNI GCATC 2 cut(s) 955, 1270
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 3 cut(s) 284, 344, 479
SmiMI CAYNNNNRTG 1 cut(s) 726
Sse9I AATT 8 cut(s) 106, 393, 442, 991, 1012, 1071, 1170, 1236
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 5 cut(s) 66, 195, 336, 532, 844
SspI AATATT 1 cut(s) 1301
SspMI CTAG 4 cut(s) 236, 341, 933, 1181
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 6 cut(s) 510, 550, 738, 747, 885, 1381
TaaI ACNGT 3 cut(s) 920, 1319, 1450
TaqI TCGA 8 cut(s) 32, 469, 523, 795, 1202, 1392, 1470, 1500
TasI AATT 8 cut(s) 106, 393, 442, 991, 1012, 1071, 1170, 1236
TatI WGTACW 1 cut(s) 1109
TauI GCSGC 1 cut(s) 847
TfiI GAWTC 9 cut(s) 129, 265, 326, 369, 495, 628, 929, 1030, 1265
Tru1I TTAA 1 cut(s) 783
Tru9I TTAA 1 cut(s) 783
TscAI CASTG 3 cut(s) 216, 857, 1195
TseI GCWGC 4 cut(s) 68, 71, 689, 1049
TspDTI ATGAA 3 cut(s) 66, 318, 551
TspGWI ACGGA 4 cut(s) 300, 407, 556, 1469
TspRI CASTG 3 cut(s) 216, 857, 1195
Tth111I GACNNNGTC 1 cut(s) 1466
VpaK11BI GGWCC 3 cut(s) 284, 344, 479
XapI RAATTY 2 cut(s) 106, 991
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 4 cut(s) 236, 341, 933, 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.