Rorug04G0140100

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008379
Physical Location & Seq
Reverse (-)
23034244 .. 23038740
4497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0140100.1

Sequence Viewer

Length: 1182 bp
ATGGCTCTCAAACTCAACGCCTTCACTATTCAATCCCCCAGGTTTGCTCTTCCCCAGATGGCCAGCCTCAGATCTCCCAAGTTCTCGATGGCCTCCACTCTCCGCTCTGGCGCCAAGGAGGTTGAGAATCTGAAGAAGCCTTTTACGCCTCCTCGGGAGGTGCATGTTCAAGTAACCCATTCCATGCCACCTCAAAAGATTGAGATCTTCAAATCCATTGAGGGTTGGGCTGAGGAGAACATCTTAGTTCACCTAAAGCCAGTTGAAAAGTGCTGGCAACCCCAGGATTTTTTGCCAGATCCTGCATCTGATGGATTTGAGGAACAAGTTAAGGAACTACGGGAGAGGGCAAAGGAGATTCCAGATGAATACTTTGTTGTTTTGGTCGGAGATATGATTACTGAAGAAGCCCTTCCAACTTATCAAACAATGCTTAATACCTTGGATGGAGTTCGGGATGAAACAGGTGCAAGCCCAACTCCTTGGGCAGTTTGGACAAGGGCATGGACAGCTGAAGAGAACAGGCACGGTGACCTTCTCAATAAGTATCTCTACCTCTCTGGCCGAGTAGACATGAGGCAAATTGAAAAGACGATTCAGTATTTGATTGGGTCTGGAATGGATCCGCGTACGGAGAACAGTCCTTACCTTGGGTTCATTTATACATCATTCCAGGAGAGGGCTACCTTCATTTCTCATGGAAATACTGCCAGGCATGCCAAGGAGTATGGGGATTTGAAGTTGGCTCAAATATGTGGCACAATAGCCTCAGATGAAAAGCGCCATGAGACTGCATATACTAAGATTGTGGAAAAGCTCTTTGAGATTGATCCCGATGGAACTGTCACGTCTTTTGCTGACATGATGAAGAAGAAGATCGCTATGCCAGCTCACTTGATGTATGATGGCCGTGATGACAAACTTTTTGATCACTTCTCAGCTGTTGCACAGCGTCTTGGTGTCTATACGGCCAAGGACTATGCAGATATATTGGAGTTCTTGGTGGGCAGGTGGAAGGTGCAGGACCTGACTGGACTTTCAGGTGAGGGTCGCAAGGCTCAAGAGTATCTGTGTGGGTTAGCCCCAAGAATTAGAAGACTAGAGGACAGAGCTCAAGCAAGGGCCAAGCAAGGACCTGCCATACCCTTCAGTTGGATCTTTGATAGAAATGTGGGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

393

Amino Acids

44.74

Weight (kDa)

6.19

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase_2 PF03405 66 - 387 4.3e-161 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 999
Acc36I ACCTGC 2 cut(s) 999, 1144
AccB1I GGYRCC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 628
AciI CCGC 2 cut(s) 103, 626
AclWI GGATC 5 cut(s) 293, 617, 630, 824, 1163
AcoI YGGCCR 4 cut(s) 60, 562, 907, 969
AcuI CTGAAG 4 cut(s) 152, 423, 534, 1132
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 3 cut(s) 650, 679, 1152
AgsI TTSAA 6 cut(s) 32, 170, 211, 266, 587, 739
AjiI CACGTC 1 cut(s) 849
AjnI CCWGG 4 cut(s) 38, 282, 672, 710
AluBI AGCT 5 cut(s) 512, 817, 890, 941, 1112
AluI AGCT 5 cut(s) 512, 817, 890, 941, 1112
Alw21I GWGCWC 1 cut(s) 1114
Alw26I GTCTC 1 cut(s) 782
AlwI GGATC 5 cut(s) 293, 617, 630, 824, 1163
AlwNI CAGNNNCTG 2 cut(s) 302, 1027
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 6 cut(s) 60, 90, 562, 907, 969, 1122
ArsI GACNNNNNNTTYG 2 cut(s) 908, 940
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 2 cut(s) 113, 783
AspS9I GGNCC 3 cut(s) 1024, 1122, 1133
AsuHPI GGTGA 3 cut(s) 242, 542, 1055
AvaI CYCGRG 1 cut(s) 153
AvaII GGWCC 2 cut(s) 1024, 1133
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 1114
BbsI GAAGAC 1 cut(s) 1102
Bbv12I GWGCWC 1 cut(s) 1114
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 6 cut(s) 52, 82, 305, 440, 830, 899
BceAI ACGGC 2 cut(s) 894, 984
BciT130I CCWGG 4 cut(s) 40, 284, 674, 712
BclI TGATCA 1 cut(s) 928
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 1 cut(s) 1100
BfoI RGCGCY 2 cut(s) 114, 784
BfuAI ACCTGC 2 cut(s) 999, 1144
BglII AGATCT 2 cut(s) 71, 204
Bme1390I CCNGG 4 cut(s) 40, 284, 674, 712
Bme18I GGWCC 2 cut(s) 1024, 1133
BmeT110I CYCGRG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 849
BmgT120I GGNCC 3 cut(s) 1024, 1122, 1133
BmiI GGNNCC 2 cut(s) 112, 624
BmrFI CCNGG 4 cut(s) 40, 284, 674, 712
BmsI GCATC 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 1102
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 1044, 1098
BsaBI GATNNNNATC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 9 cut(s) 38, 114, 152, 282, 441, 482, 649, 720, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 650, 679, 1152
Bse1I ACTGG 2 cut(s) 260, 1036
Bse8I GATNNNNATC 1 cut(s) 203
BseBI CCWGG 4 cut(s) 40, 284, 674, 712
BseDI CCNNGG 9 cut(s) 38, 114, 152, 282, 441, 482, 649, 720, 972
BseGI GGATG 2 cut(s) 451, 463
BseJI GATNNNNATC 1 cut(s) 203
BseLI CCNNNNNNNGG 3 cut(s) 650, 679, 1152
BseMII CTCAG 4 cut(s) 82, 222, 783, 951
BseNI ACTGG 2 cut(s) 260, 1036
BseRI GAGGAG 2 cut(s) 141, 248
BsgI GTGCAG 1 cut(s) 1040
Bsh1236I CGCG 1 cut(s) 628
BshFI GGCC 6 cut(s) 62, 92, 564, 909, 971, 1124
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 1114
BsiHKCI CYCGRG 1 cut(s) 153
BsiWI CGTACG 1 cut(s) 629
BslI CCNNNNNNNGG 3 cut(s) 650, 679, 1152
BsmAI GTCTC 1 cut(s) 782
BsnI GGCC 6 cut(s) 62, 92, 564, 909, 971, 1124
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 1114
Bsp143I GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
BspACI CCGC 2 cut(s) 103, 626
BspANI GGCC 6 cut(s) 62, 92, 564, 909, 971, 1124
BspCNI CTCAG 4 cut(s) 81, 223, 782, 950
BspFNI CGCG 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 112, 624
BspMI ACCTGC 2 cut(s) 999, 1144
BspPI GGATC 5 cut(s) 293, 617, 630, 824, 1163
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 260, 1036
BssECI CCNNGG 9 cut(s) 38, 114, 152, 282, 441, 482, 649, 720, 972
BssMI GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 6 cut(s) 114, 441, 482, 649, 720, 972
Bst2UI CCWGG 4 cut(s) 40, 284, 674, 712
Bst4CI ACNGT 4 cut(s) 530, 641, 844, 1179
Bst6I CTCTTC 2 cut(s) 54, 510
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 5 cut(s) 64, 275, 472, 717, 888
BstDEI CTNAG 6 cut(s) 68, 231, 244, 769, 801, 937
BstEII GGTNACC 1 cut(s) 530
BstF5I GGATG 2 cut(s) 451, 463
BstFNI CGCG 1 cut(s) 628
BstH2I RGCGCY 2 cut(s) 114, 784
BstHHI GCGC 2 cut(s) 113, 783
BstKTI GATC 8 cut(s) 74, 207, 301, 625, 832, 879, 931, 1158
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
BstMWI GCNNNNNNNGC 4 cut(s) 145, 509, 716, 887
BstNI CCWGG 4 cut(s) 40, 284, 674, 712
BstNSI RCATGY 2 cut(s) 167, 719
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 4 cut(s) 38, 282, 672, 710
BstUI CGCG 1 cut(s) 628
BstV2I GAAGAC 1 cut(s) 1102
BstX2I RGATCY 5 cut(s) 71, 204, 298, 622, 1155
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 5 cut(s) 71, 204, 298, 622, 1155
BsuRI GGCC 6 cut(s) 62, 92, 564, 909, 971, 1124
BtrI CACGTC 1 cut(s) 849
BtsCI GGATG 2 cut(s) 451, 463
BveI ACCTGC 2 cut(s) 999, 1144
Cac8I GCNNGC 5 cut(s) 64, 275, 472, 717, 888
CaiI CAGNNNCTG 2 cut(s) 302, 1027
CfoI GCGC 2 cut(s) 113, 783
Cfr13I GGNCC 3 cut(s) 1024, 1122, 1133
CseI GACGC 1 cut(s) 941
Csp6I GTAC 1 cut(s) 630
CviAII CATG 8 cut(s) 164, 184, 504, 574, 698, 716, 785, 862
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 6 cut(s) 68, 231, 244, 769, 801, 937
DinI GGCGCC 1 cut(s) 112
DpnI GATC 8 cut(s) 73, 206, 300, 624, 831, 878, 930, 1157
DpnII GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
EaeI YGGCCR 4 cut(s) 60, 562, 907, 969
Eam1104I CTCTTC 2 cut(s) 54, 510
EarI CTCTTC 2 cut(s) 54, 510
Ecl136II GAGCTC 1 cut(s) 1112
Eco130I CCWWGG 6 cut(s) 114, 441, 482, 649, 720, 972
Eco24I GRGCYC 1 cut(s) 1114
Eco47I GGWCC 2 cut(s) 1024, 1133
Eco53kI GAGCTC 1 cut(s) 1112
Eco57I CTGAAG 4 cut(s) 152, 423, 534, 1132
Eco88I CYCGRG 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 1112
EcoO109I RGGNCCY 2 cut(s) 1024, 1133
EcoO65I GGTNACC 1 cut(s) 530
EcoRII CCWGG 4 cut(s) 38, 282, 672, 710
EcoT14I CCWWGG 6 cut(s) 114, 441, 482, 649, 720, 972
EcoT38I GRGCYC 1 cut(s) 1114
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 6 cut(s) 114, 441, 482, 649, 720, 972
FaeI CATG 8 cut(s) 167, 187, 507, 577, 701, 719, 788, 865
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 8 cut(s) 163, 183, 503, 573, 697, 715, 784, 861
FbaI TGATCA 1 cut(s) 928
FblI GTMKAC 1 cut(s) 570
FokI GGATG 2 cut(s) 458, 470
FriOI GRGCYC 1 cut(s) 1114
FspBI CTAG 1 cut(s) 1100
GlaI GCGC 2 cut(s) 112, 782
HaeII RGCGCY 2 cut(s) 114, 784
HaeIII GGCC 6 cut(s) 62, 92, 564, 909, 971, 1124
HgaI GACGC 1 cut(s) 941
HhaI GCGC 2 cut(s) 113, 783
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 8 cut(s) 167, 187, 507, 577, 701, 719, 788, 865
Hin6I GCGC 2 cut(s) 111, 781
HinP1I GCGC 2 cut(s) 111, 781
HinfI GANTC 3 cut(s) 127, 358, 595
HphI GGTGA 3 cut(s) 242, 542, 1055
Hpy166II GTNNAC 2 cut(s) 250, 571
Hpy188I TCNGA 5 cut(s) 71, 132, 310, 389, 772
Hpy188III TCNNGA 7 cut(s) 85, 155, 362, 455, 615, 833, 1061
Hpy8I GTNNAC 2 cut(s) 250, 571
HpyAV CCTTC 6 cut(s) 31, 422, 545, 697, 1009, 1156
HpyCH4III ACNGT 4 cut(s) 530, 641, 844, 1179
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 7 cut(s) 163, 305, 470, 794, 947, 983, 1021
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 509, 716, 887
HpyF3I CTNAG 6 cut(s) 68, 231, 244, 769, 801, 937
HpySE526I ACGT 1 cut(s) 848
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 8 cut(s) 167, 187, 507, 577, 701, 719, 788, 865
HspAI GCGC 2 cut(s) 111, 781
KasI GGCGCC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
LguI GCTCTTC 1 cut(s) 54
LweI GCATC 1 cut(s) 314
MaeI CTAG 1 cut(s) 1100
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 3 cut(s) 172, 530, 844
MalI GATC 8 cut(s) 73, 206, 300, 624, 831, 878, 930, 1157
MbiI CCGCTC 1 cut(s) 105
MboI GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
MboII GAAGA 9 cut(s) 41, 145, 199, 416, 527, 880, 883, 886, 1107
MflI RGATCY 5 cut(s) 71, 204, 298, 622, 1155
MhlI GDGCHC 1 cut(s) 1114
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 582, 1089
MluNI TGGCCA 1 cut(s) 62
Mly113I GGCGCC 1 cut(s) 111
MmeI TCCRAC 3 cut(s) 367, 440, 1133
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 411
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 330, 435
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 2 cut(s) 512, 941
MspR9I CCNGG 4 cut(s) 40, 284, 674, 712
MvaI CCWGG 4 cut(s) 40, 284, 674, 712
MvnI CGCG 1 cut(s) 628
MwoI GCNNNNNNNGC 4 cut(s) 145, 509, 716, 887
NarI GGCGCC 1 cut(s) 111
NdeII GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
NlaIII CATG 8 cut(s) 167, 187, 507, 577, 701, 719, 788, 865
NlaIV GGNNCC 2 cut(s) 112, 624
NmeAIII GCCGAG 1 cut(s) 590
NmuCI GTSAC 2 cut(s) 530, 844
NspI RCATGY 2 cut(s) 167, 719
PaeI GCATGC 1 cut(s) 719
PaqCI CACCTGC 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 127, 358, 595
Pfl23II CGTACG 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 672
PluTI GGCGCC 1 cut(s) 114
PpuMI RGGWCCY 2 cut(s) 1024, 1133
Psp124BI GAGCTC 1 cut(s) 1114
Psp5II RGGWCCY 2 cut(s) 1024, 1133
Psp6I CCWGG 4 cut(s) 38, 282, 672, 710
PspEI GGTNACC 1 cut(s) 530
PspGI CCWGG 4 cut(s) 38, 282, 672, 710
PspLI CGTACG 1 cut(s) 629
PspN4I GGNNCC 2 cut(s) 112, 624
PspPI GGNCC 3 cut(s) 1024, 1122, 1133
PspPPI RGGWCCY 2 cut(s) 1024, 1133
PsrI GAACNNNNNNTAC 2 cut(s) 629, 661
PstNI CAGNNNCTG 2 cut(s) 302, 1027
PsuI RGATCY 5 cut(s) 71, 204, 298, 622, 1155
PvuII CAGCTG 2 cut(s) 512, 941
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
SacI GAGCTC 1 cut(s) 1114
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 330, 435
Sau3AI GATC 8 cut(s) 71, 204, 298, 622, 829, 876, 928, 1155
Sau96I GGNCC 3 cut(s) 1024, 1122, 1133
ScrFI CCNGG 4 cut(s) 40, 284, 674, 712
SduI GDGCHC 1 cut(s) 1114
SfaNI GCATC 1 cut(s) 314
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 2 cut(s) 1024, 1133
SmlI CTYRAG 2 cut(s) 1059, 1113
SmoI CTYRAG 2 cut(s) 1059, 1113
SphI GCATGC 1 cut(s) 719
Sse9I AATT 2 cut(s) 582, 1089
SsiI CCGC 2 cut(s) 103, 626
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 1 cut(s) 1100
SstI GAGCTC 1 cut(s) 1114
StyD4I CCNGG 4 cut(s) 38, 282, 672, 710
StyI CCWWGG 6 cut(s) 114, 441, 482, 649, 720, 972
TaaI ACNGT 4 cut(s) 530, 641, 844, 1179
TaiI ACGT 1 cut(s) 851
TaqI TCGA 1 cut(s) 86
TasI AATT 2 cut(s) 582, 1089
TfiI GAWTC 3 cut(s) 127, 358, 595
Tru1I TTAA 2 cut(s) 330, 435
Tru9I TTAA 2 cut(s) 330, 435
TseFI GTSAC 2 cut(s) 530, 844
Tsp45I GTSAC 2 cut(s) 530, 844
TspDTI ATGAA 6 cut(s) 381, 474, 646, 679, 789, 881
TspGWI ACGGA 1 cut(s) 647
VpaK11BI GGWCC 2 cut(s) 1024, 1133
XceI RCATGY 2 cut(s) 167, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 1 cut(s) 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.