Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001145.1

Orthogroup ID

OG0008379

Physical Location & Seq

Genomic Coordinates Reverse (-)

20105 .. 30702

Gene Structure 10598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001145.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

atgaccgaacaaaggggaaacacacgtccagtggccggacaagagggagatcaaagtgaagatacacaagataaaaggagatggacggatgaggaagatgttcaattgtgcaagtcttggaaagttgtaagtcaatgtccggctgtgggcacaaatcagaaaaaactcgaattatggttgcgcgtgaagcgacactttgacgcaaattggcccaagagccgatcagcccaatctttgcagggaaggtggaaaattttgaagattgaactctttgagtggcattgtgcattaaggcaaacgaaatattggtacaagagcggaatcaccgtggtcttcgacactactggggccttcgtgtgcgtggacagcacaccaagaccactggccgcagggggaagactgttggtgtgtccaagaaacgttgaagaatatgttctggctgtctgggaggatttcataagtggcgatgatccgagggcttccaagtatatgaggactggtgggggttatgagaatgtggggtttaggcaaggcggtggcggcggaggtggtgataatgtgggtcataagcatcttcaggttgaccaggctgcgttgaagaaggcatttctgtactttgcgaaggtgattaatgagaatggagcgcagaagaagatttacatagaggatgggaagcagggacggcttaattgtcttgcttgtggcaccactggcaggtctgcaaaagattttccggatatgcatagtctcatcatgcacagttacaacacggacaatgcggacattcgtgtggatcacttgggcttacacaaggctttgtgtgttttaaaggggtggaactactcaaagcctcctgataactcaaaggcatatcagttcctttccgctgatgaagcagcagcaaatcaagatgacttgattatgtggccgcccatggtgataattcataatacgcttacaggaaagagtaaagatggccgcatggagggtttgggcaataaagctatggatagttatatacgagatcttgggtttgggagtggcaagtcgaagtccctgtacggtagagatggacatttgggaacaactttaatcaaattttcagctgatgaagcgggcctcaaggaggccttgcgaatgacagaattctttgagaaggacaatcatggacgcagggcttggtatcatgtacaaccgctcatgttgggcaataaggatgatgagaacaatccttatcttgtgaagttagatgaaaagactcgggaaaagaagagagtcctttatggttatctaggaactgcttctgatctcgagaaagttgattttgacacgagaaagaaggctgtgattgaaagctggagagaattcaaacctcctaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

460

Amino Acids

52.0

Weight (kDa)

8.91

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22430
fragaria_vesca	FvH4_4g15540 FvH4_4g15540 FvH4_4g15540 FvH4_4g15540
malus_domestica	MD13G1193000.v1.1 MD16G1193900.v1.1
prunus_persica	Prupe.1G013600_v2.0.a1
pyrus_communis	pycom13g16530 pycom16g16360
rosa_chinensis	RchiOBHm_Chr4g0416221
rosa_laevigata	RLG00000008005
rosa_multiflora	Rmu_co7965312.1_g000001 Rmu_sc0001145.1_g000005 Rmu_sc0032525.1_g000002
rosa_roxburghii	Rroxscaffold_5G00360070
rosa_rugosa	Rorug04G0140000.1 Rorug04G0140100
rosa_samantha	Rh4AG202000 Rh4BG199400 Rh4CG213900 Rh4DG199200
rosa_wichuraiana	Rw4G017080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	704
AccBSI	CCGCTC	2 cut(s)	318, 1198
AccII	CGCG	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	733
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	2 cut(s)	464, 801
AcoI	YGGCCR	4 cut(s)	33, 384, 926, 976
AcsI	RAATTY	4 cut(s)	252, 1097, 1145, 1364
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	4 cut(s)	311, 614, 1061, 1191
AfiI	CCNNNNNNNGG	6 cut(s)	12, 35, 146, 714, 985, 1126
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	7 cut(s)	104, 259, 266, 425, 598, 1352, 1369
AjiI	CACGTC	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	1004, 1106, 1356
AluI	AGCT	3 cut(s)	1004, 1106, 1356
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	2 cut(s)	464, 801
Ama87I	CYCGRG	2 cut(s)	1260, 1310
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	8 cut(s)	33, 209, 348, 384, 926, 976, 1117, 1128
ApeKI	GCWGC	3 cut(s)	590, 896, 899
ApoI	RAATTY	4 cut(s)	252, 1097, 1145, 1364
AseI	ATTAAT	1 cut(s)	630
Asp700I	GAANNNNTTC	3 cut(s)	99, 432, 1300
AspLEI	GCGC	2 cut(s)	183, 646
AspS9I	GGNCC	3 cut(s)	210, 348, 1117
AsuHPI	GGTGA	4 cut(s)	316, 563, 637, 949
AvaI	CYCGRG	2 cut(s)	1260, 1310
BaeGI	GKGCMC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	704
BarI	GAAGNNNNNNTAC	4 cut(s)	641, 673, 1043, 1075
BauI	CACGAG	1 cut(s)	1330
BbsI	GAAGAC	2 cut(s)	325, 403
BbvI	GCAGC	3 cut(s)	577, 908, 911
BccI	CCATC	4 cut(s)	75, 662, 968, 1064
BceAI	ACGGC	1 cut(s)	698
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	1 cut(s)	1292
BfuAI	ACCTGC	1 cut(s)	705
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	7 cut(s)	387, 541, 591, 897, 900, 929, 979
BlsI	GCNGC	7 cut(s)	388, 542, 592, 898, 901, 930, 980
Bme1390I	CCNGG	1 cut(s)	587
BmeT110I	CYCGRG	2 cut(s)	1260, 1310
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	210, 348, 1117
BmiI	GGNNCC	2 cut(s)	349, 706
BmrFI	CCNGG	1 cut(s)	587
BmrI	ACTGGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	2 cut(s)	325, 403
BpmI	CTGGAG	1 cut(s)	1378
BpuEI	CTTGAG	1 cut(s)	1106
BsaJI	CCNNGG	3 cut(s)	327, 473, 933
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	6 cut(s)	12, 35, 146, 714, 985, 1126
Bse1I	ACTGG	5 cut(s)	29, 349, 387, 502, 715
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	3 cut(s)	327, 473, 933
BseGI	GGATG	3 cut(s)	94, 673, 1222
BseLI	CCNNNNNNNGG	6 cut(s)	12, 35, 146, 714, 985, 1126
BseNI	ACTGG	5 cut(s)	29, 349, 387, 502, 715
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	577, 908, 911
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	8 cut(s)	35, 211, 350, 386, 928, 978, 1119, 1130
BshNI	GGYRCC	1 cut(s)	704
BsiHKCI	CYCGRG	2 cut(s)	1260, 1310
BsiSI	CCGG	3 cut(s)	36, 140, 734
BslFI	GGGAC	2 cut(s)	693, 1039
BslI	CCNNNNNNNGG	6 cut(s)	12, 35, 146, 714, 985, 1126
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	2 cut(s)	693, 1039
BsnI	GGCC	8 cut(s)	35, 211, 350, 386, 928, 978, 1119, 1130
BsoBI	CYCGRG	2 cut(s)	1260, 1310
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp13I	TCCGGA	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	1189
Bsp143I	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
Bsp19I	CCATGG	1 cut(s)	933
BspANI	GGCC	8 cut(s)	35, 211, 350, 386, 928, 978, 1119, 1130
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	349, 706
BspMI	ACCTGC	1 cut(s)	705
BspPI	GGATC	2 cut(s)	464, 801
BspT107I	GGYRCC	1 cut(s)	704
BsrBI	CCGCTC	2 cut(s)	318, 1198
BsrGI	TGTACA	1 cut(s)	1189
BsrI	ACTGG	5 cut(s)	29, 349, 387, 502, 715
BssECI	CCNNGG	3 cut(s)	327, 473, 933
BssMI	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
BssSI	CACGAG	1 cut(s)	1330
BssT1I	CCWWGG	1 cut(s)	933
Bst2BI	CACGAG	1 cut(s)	1330
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	4 cut(s)	328, 402, 761, 1064
Bst6I	CTCTTC	1 cut(s)	1265
BstAUI	TGTACA	1 cut(s)	1189
BstC8I	GCNNGC	1 cut(s)	1117
BstDEI	CTNAG	1 cut(s)	1377
BstDSI	CCRYGG	2 cut(s)	327, 933
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstF5I	GGATG	3 cut(s)	94, 673, 1222
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	183, 646
BstKTI	GATC	6 cut(s)	52, 224, 472, 796, 1027, 1309
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
BstMWI	GCNNNNNNNGC	7 cut(s)	187, 366, 540, 682, 711, 893, 1112
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	577, 908, 911
BstV2I	GAAGAC	2 cut(s)	325, 403
BstX2I	RGATCY	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	1024
BsuRI	GGCC	8 cut(s)	35, 211, 350, 386, 928, 978, 1119, 1130
BtgI	CCRYGG	2 cut(s)	327, 933
BtgZI	GCGATG	1 cut(s)	480
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	94, 673, 1222
BtsIMutI	CAGTG	3 cut(s)	36, 380, 708
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	1117
CfoI	GCGC	2 cut(s)	183, 646
Cfr13I	GGNCC	3 cut(s)	210, 348, 1117
CseI	GACGC	2 cut(s)	209, 1179
Csp6I	GTAC	4 cut(s)	310, 613, 1060, 1190
CviAII	CATG	6 cut(s)	754, 934, 982, 1166, 1187, 1201
CviQI	GTAC	4 cut(s)	310, 613, 1060, 1190
DdeI	CTNAG	1 cut(s)	1377
DpnI	GATC	6 cut(s)	51, 223, 471, 795, 1026, 1308
DpnII	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
DraI	TTTAAA	1 cut(s)	828
EaeI	YGGCCR	4 cut(s)	33, 384, 926, 976
Eam1104I	CTCTTC	1 cut(s)	1265
EarI	CTCTTC	1 cut(s)	1265
EciI	GGCGGA	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	933
Eco147I	AGGCCT	1 cut(s)	1130
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	2 cut(s)	1260, 1310
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRI	GAATTC	2 cut(s)	1145, 1364
EcoRII	CCWGG	1 cut(s)	585
EcoT14I	CCWWGG	1 cut(s)	933
EcoT22I	ATGCAT	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	933
FaeI	CATG	6 cut(s)	757, 937, 985, 1169, 1190, 1204
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 1115, 1147
FaqI	GGGAC	2 cut(s)	693, 1039
FatI	CATG	6 cut(s)	753, 933, 981, 1165, 1186, 1200
FauI	CCCGC	1 cut(s)	1108
Fnu4HI	GCNGC	7 cut(s)	387, 541, 591, 897, 900, 929, 979
FokI	GGATG	3 cut(s)	101, 680, 1229
Fsp4HI	GCNGC	7 cut(s)	387, 541, 591, 897, 900, 929, 979
FspBI	CTAG	1 cut(s)	1292
GlaI	GCGC	2 cut(s)	182, 645
GluI	GCNGC	7 cut(s)	387, 541, 591, 897, 900, 929, 979
GsuI	CTGGAG	1 cut(s)	1378
HaeIII	GGCC	8 cut(s)	35, 211, 350, 386, 928, 978, 1119, 1130
HapII	CCGG	3 cut(s)	36, 140, 734
HgaI	GACGC	2 cut(s)	209, 1179
HhaI	GCGC	2 cut(s)	183, 646
Hin1II	CATG	6 cut(s)	757, 937, 985, 1169, 1190, 1204
Hin6I	GCGC	2 cut(s)	181, 644
HinP1I	GCGC	2 cut(s)	181, 644
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	3 cut(s)	321, 1258, 1275
HpaII	CCGG	3 cut(s)	36, 140, 734
HphI	GGTGA	4 cut(s)	316, 563, 637, 949
Hpy166II	GTNNAC	2 cut(s)	364, 583
Hpy188I	TCNGA	3 cut(s)	159, 474, 1306
Hpy188III	TCNNGA	6 cut(s)	734, 854, 908, 1262, 1310, 1312
Hpy8I	GTNNAC	2 cut(s)	364, 583
HpyAV	CCTTC	6 cut(s)	237, 361, 595, 616, 1150, 1333
HpyCH4III	ACNGT	4 cut(s)	328, 402, 761, 1064
HpyCH4IV	ACGT	2 cut(s)	25, 420
HpyCH4V	TGCA	6 cut(s)	111, 238, 287, 722, 742, 757
HpyF10VI	GCNNNNNNNGC	7 cut(s)	187, 366, 540, 682, 711, 893, 1112
HpyF3I	CTNAG	1 cut(s)	1377
HpySE526I	ACGT	2 cut(s)	25, 420
Hsp92II	CATG	6 cut(s)	757, 937, 985, 1169, 1190, 1204
HspAI	GCGC	2 cut(s)	181, 644
Kpn2I	TCCGGA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
LmnI	GCTCC	1 cut(s)	641
Lsp1109I	GCAGC	3 cut(s)	577, 908, 911
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	1 cut(s)	1292
MaeII	ACGT	2 cut(s)	25, 420
MaeIII	GTNAC	1 cut(s)	761
MalI	GATC	6 cut(s)	51, 223, 471, 795, 1026, 1308
MbiI	CCGCTC	2 cut(s)	318, 1198
MboI	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	9 cut(s)	104, 170, 205, 252, 688, 942, 1097, 1145, 1364
MlyI	GAGTC	2 cut(s)	1252, 1284
Mph1103I	ATGCAT	1 cut(s)	744
MroI	TCCGGA	1 cut(s)	733
MroXI	GAANNNNTTC	3 cut(s)	99, 432, 1300
MseI	TTAA	5 cut(s)	290, 630, 687, 827, 1091
MslI	CAYNNNNRTG	1 cut(s)	788
MspA1I	CMGCKG	2 cut(s)	887, 1106
MspI	CCGG	3 cut(s)	36, 140, 734
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	7 cut(s)	187, 366, 540, 682, 711, 893, 1112
NcoI	CCATGG	1 cut(s)	933
NdeII	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
NlaIII	CATG	6 cut(s)	757, 937, 985, 1169, 1190, 1204
NlaIV	GGNNCC	2 cut(s)	349, 706
NsiI	ATGCAT	1 cut(s)	744
PaeR7I	CTCGAG	1 cut(s)	1310
PceI	AGGCCT	1 cut(s)	1130
PdmI	GAANNNNTTC	3 cut(s)	99, 432, 1300
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	7 cut(s)	388, 542, 592, 898, 901, 930, 980
PleI	GAGTC	2 cut(s)	1252, 1283
PpsI	GAGTC	2 cut(s)	1252, 1283
PshBI	ATTAAT	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	349, 706
PspPI	GGNCC	3 cut(s)	210, 348, 1117
PsuI	RGATCY	1 cut(s)	1024
PvuII	CAGCTG	1 cut(s)	1106
RsaI	GTAC	4 cut(s)	311, 614, 1061, 1191
RsaNI	GTAC	4 cut(s)	310, 613, 1060, 1190
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	5 cut(s)	290, 630, 687, 827, 1091
SatI	GCNGC	7 cut(s)	387, 541, 591, 897, 900, 929, 979
Sau3AI	GATC	6 cut(s)	49, 221, 469, 793, 1024, 1306
Sau96I	GGNCC	3 cut(s)	210, 348, 1117
SchI	GAGTC	2 cut(s)	1252, 1284
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	152
SfaNI	GCATC	1 cut(s)	580
Sfr274I	CTCGAG	1 cut(s)	1310
SlaI	CTCGAG	1 cut(s)	1310
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	1121, 1310
SmoI	CTYRAG	2 cut(s)	1121, 1310
Sse9I	AATT	9 cut(s)	104, 170, 205, 252, 688, 942, 1097, 1145, 1364
SseBI	AGGCCT	1 cut(s)	1130
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	1292
StuI	AGGCCT	1 cut(s)	1130
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	933
TaaI	ACNGT	4 cut(s)	328, 402, 761, 1064
TaiI	ACGT	2 cut(s)	28, 423
TaqI	TCGA	4 cut(s)	168, 336, 1049, 1311
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	9 cut(s)	104, 170, 205, 252, 688, 942, 1097, 1145, 1364
TatI	WGTACW	2 cut(s)	612, 1189
TauI	GCSGC	4 cut(s)	389, 543, 931, 981
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	5 cut(s)	290, 630, 687, 827, 1091
Tru9I	TTAA	5 cut(s)	290, 630, 687, 827, 1091
TscAI	CASTG	3 cut(s)	36, 387, 715
TseI	GCWGC	3 cut(s)	590, 896, 899
TspDTI	ATGAA	5 cut(s)	445, 906, 935, 1125, 1266
TspGWI	ACGGA	2 cut(s)	101, 785
TspRI	CASTG	3 cut(s)	36, 387, 715
VspI	ATTAAT	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	4 cut(s)	252, 1097, 1145, 1364
XhoI	CTCGAG	1 cut(s)	1310
XmnI	GAANNNNTTC	3 cut(s)	99, 432, 1300
XspI	CTAG	1 cut(s)	1292
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.