Rroxscaffold_5G00360070

XS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008379
Physical Location & Seq
Reverse (-)
40350480 .. 40360687
10208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00360070.1

Sequence Viewer

Length: 1113 bp
ATGGACCCGTCGGGGCGGTTCTTGCCGTTCGGGCCGGGCCGGCCGGCCGGTCCGGACTACTGGAATTCGCTTGGGCTGGACGGCCGTGGGCCCCAGGAAGGGTCGATGAAGAGGAAGTTTGGGGAAGAAGAGGAGCTGAGGGATAAGGGAGAAGAGTTGGCCAAGCGGCGGCAGCAGTTGGTGCAATTCGGAAACGGGTTTGCGGCGGGTCCGAGTAGCCCGTTTCGGCGTGACTTGGGGGCCCAATCCAGAAGTGGCGATGATCCGAGAGCTTCCAAGTATATGAGGACTGGTGGGGGTTATGAGAATGTTGGGTTTAGGCAAGGCGGTGGCGGCGGAGGTGGTGGTGGTGGTGGTGATAATGTGGGACATAAGCATCTTCAGGTCGACCAGGCTGCGTTGAAGAAGGCATTTCTGTACTTTGCGAAGGTGATTAATGAGAATGGAGCGCAGAAGAAGATTTACATAGAGGATGGGAAGCAGGGACGGCTTAATTGTCTTGCTTGTGGCACCAGTGGCAGGTCTGCAAAAGATTTTCCGGATATGCATAGTCTCATCATGCACAGTTACAACACGGACAATGCGGACATTCGTGTGGATCACTTGGGCTTACACAAGGCTTTGTGTGTTTTAATGGGGTGGAACTACTCAAAGCCTCCTGATAACTCAAAGGCATATCAGTTCCTTTCTGCTGATGAAGCAGCAGCAAATCAAGATGACTTGATTATGTGGCCGCCCATGGTGATAATTCATAATACGCTTACAGGAAAGAGTAAAGATGGCCGCATGGAGGGTTTGGGCAATAAAGCTATGGATAGTTATATACGAGATCTTGGGTTTGGGAGTGGCAAGTCGAAGTCCCTGTACGGTAGAGATGGACATTTGGGAACAACTTTAATCAAGTTTTCAGCTGATGAAGCGGGCCTCAAGGAGGCCTTGCGAATGACAGAATTCTTTGAGAAGGACAATCATGGACGCAGGGCTTGGTATCATGTACAACCGCTCACGTTGGGCAATAAGGATGATGAGAACAATCCTTATCTTGTGAAGTTAGATGAAAAGACTCGGGAAAAGAAAGAGAGTCCTTTATGGTTATCTAGGAACTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XS

Protein Analysis

370

Amino Acids

40.8

Weight (kDa)

8.8

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 239 - 340 1.6e-23 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 510
AccB1I GGYRCC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 1003
AccI GTMKAC 1 cut(s) 387
AccIII TCCGGA 2 cut(s) 52, 538
AclWI GGATC 2 cut(s) 257, 606
AcoI YGGCCR 6 cut(s) 41, 45, 82, 159, 731, 781
AcsI RAATTY 2 cut(s) 64, 950
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 3 cut(s) 419, 866, 996
AfiI CCNNNNNNNGG 6 cut(s) 98, 99, 168, 519, 790, 931
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 2 cut(s) 93, 390
AluBI AGCT 4 cut(s) 136, 272, 809, 911
AluI AGCT 4 cut(s) 136, 272, 809, 911
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 2 cut(s) 257, 606
Ama87I CYCGRG 1 cut(s) 1065
Aor13HI TCCGGA 2 cut(s) 52, 538
ApaI GGGCCC 2 cut(s) 93, 244
ApeKI GCWGC 4 cut(s) 172, 395, 701, 704
ApoI RAATTY 2 cut(s) 64, 950
AseI ATTAAT 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 1106
AspLEI GCGC 1 cut(s) 451
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 368, 442, 754
AvaI CYCGRG 1 cut(s) 1065
AvaII GGWCC 3 cut(s) 4, 50, 209
BaeGI GKGCMC 2 cut(s) 93, 244
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 2 cut(s) 93, 244
BarI GAAGNNNNNNTAC 4 cut(s) 446, 478, 848, 880
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 4 cut(s) 184, 382, 713, 716
BccI CCATC 3 cut(s) 467, 773, 869
BceAI ACGGC 4 cut(s) 10, 69, 97, 503
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 2 cut(s) 95, 392
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 1 cut(s) 1098
BfuAI ACCTGC 1 cut(s) 510
BglI GCCNNNNNGGC 2 cut(s) 31, 40
BglII AGATCT 1 cut(s) 829
Bme1390I CCNGG 3 cut(s) 36, 95, 392
Bme18I GGWCC 3 cut(s) 4, 50, 209
BmeT110I CYCGRG 1 cut(s) 1065
BmiI GGNNCC 7 cut(s) 6, 91, 92, 210, 241, 242, 511
BmrFI CCNGG 3 cut(s) 36, 95, 392
BmsI GCATC 1 cut(s) 385
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 85, 93, 738
BsaWI WCCGGW 2 cut(s) 52, 538
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 99, 168, 519, 790, 931
Bse118I RCCGGY 3 cut(s) 39, 43, 47
Bse1I ACTGG 3 cut(s) 65, 295, 513
BseAI TCCGGA 2 cut(s) 52, 538
BseBI CCWGG 2 cut(s) 95, 392
BseDI CCNNGG 3 cut(s) 85, 93, 738
BseGI GGATG 2 cut(s) 478, 1027
BseLI CCNNNNNNNGG 6 cut(s) 98, 99, 168, 519, 790, 931
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 65, 295, 513
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 2 cut(s) 93, 244
BseX3I CGGCCG 3 cut(s) 41, 45, 82
BseXI GCAGC 4 cut(s) 184, 382, 713, 716
Bsh1285I CGRYCG 3 cut(s) 44, 48, 85
BshNI GGYRCC 1 cut(s) 509
BsiEI CGRYCG 3 cut(s) 44, 48, 85
BsiHKCI CYCGRG 1 cut(s) 1065
BsiSI CCGG 6 cut(s) 35, 40, 44, 48, 53, 539
BslFI GGGAC 3 cut(s) 381, 498, 844
BslI CCNNNNNNNGG 6 cut(s) 98, 99, 168, 519, 790, 931
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 3 cut(s) 381, 498, 844
BsoBI CYCGRG 1 cut(s) 1065
Bsp120I GGGCCC 2 cut(s) 89, 240
Bsp1286I GDGCHC 2 cut(s) 93, 244
Bsp13I TCCGGA 2 cut(s) 52, 538
Bsp1407I TGTACA 1 cut(s) 994
Bsp143I GATC 3 cut(s) 262, 598, 829
Bsp19I CCATGG 1 cut(s) 738
BspCNI CTCAG 1 cut(s) 129
BspEI TCCGGA 2 cut(s) 52, 538
BspLI GGNNCC 7 cut(s) 6, 91, 92, 210, 241, 242, 511
BspMI ACCTGC 1 cut(s) 510
BspPI GGATC 2 cut(s) 257, 606
BspT107I GGYRCC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 1003
BsrFI RCCGGY 3 cut(s) 39, 43, 47
BsrGI TGTACA 1 cut(s) 994
BsrI ACTGG 3 cut(s) 65, 295, 513
BssAI RCCGGY 3 cut(s) 39, 43, 47
BssECI CCNNGG 3 cut(s) 85, 93, 738
BssMI GATC 3 cut(s) 262, 598, 829
BssT1I CCWWGG 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 95, 392
Bst4CI ACNGT 2 cut(s) 566, 869
Bst6I CTCTTC 3 cut(s) 104, 123, 147
BstAPI GCANNNNNTGC 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 994
BstC8I GCNNGC 3 cut(s) 41, 45, 922
BstDEI CTNAG 1 cut(s) 137
BstDSI CCRYGG 2 cut(s) 85, 738
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 2 cut(s) 478, 1027
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 265, 601, 832
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 3 cut(s) 262, 598, 829
BstMCI CGRYCG 3 cut(s) 44, 48, 85
BstNI CCWGG 2 cut(s) 95, 392
BstSCI CCNGG 3 cut(s) 34, 93, 390
BstSLI GKGCMC 2 cut(s) 93, 244
BstV1I GCAGC 4 cut(s) 184, 382, 713, 716
BstX2I RGATCY 1 cut(s) 829
BstYI RGATCY 1 cut(s) 829
BstZI CGGCCG 3 cut(s) 41, 45, 82
BtgI CCRYGG 2 cut(s) 85, 738
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 478, 1027
BtsIMutI CAGTG 1 cut(s) 520
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 41, 45, 922
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 3 cut(s) 39, 43, 47
CpoI CGGWCCG 1 cut(s) 50
CseI GACGC 1 cut(s) 984
Csp6I GTAC 3 cut(s) 418, 865, 995
CspI CGGWCCG 1 cut(s) 50
CviAII CATG 5 cut(s) 559, 739, 787, 971, 992
CviQI GTAC 3 cut(s) 418, 865, 995
DdeI CTNAG 1 cut(s) 137
DpnI GATC 3 cut(s) 264, 600, 831
DpnII GATC 3 cut(s) 262, 598, 829
EaeI YGGCCR 6 cut(s) 41, 45, 82, 159, 731, 781
EagI CGGCCG 3 cut(s) 41, 45, 82
Eam1104I CTCTTC 3 cut(s) 104, 123, 147
EarI CTCTTC 3 cut(s) 104, 123, 147
EciI GGCGGA 1 cut(s) 351
EclXI CGGCCG 3 cut(s) 41, 45, 82
Eco130I CCWWGG 1 cut(s) 738
Eco147I AGGCCT 1 cut(s) 935
Eco24I GRGCYC 2 cut(s) 93, 244
Eco47I GGWCC 3 cut(s) 4, 50, 209
Eco52I CGGCCG 3 cut(s) 41, 45, 82
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 1065
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoO109I RGGNCCY 2 cut(s) 90, 240
EcoRI GAATTC 2 cut(s) 64, 950
EcoRII CCWGG 2 cut(s) 93, 390
EcoT14I CCWWGG 1 cut(s) 738
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 93, 244
ErhI CCWWGG 1 cut(s) 738
FaeI CATG 5 cut(s) 562, 742, 790, 974, 995
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 3 cut(s) 381, 498, 844
FatI CATG 5 cut(s) 558, 738, 786, 970, 991
FauI CCCGC 2 cut(s) 199, 913
FblI GTMKAC 1 cut(s) 387
FokI GGATG 2 cut(s) 485, 1034
FriOI GRGCYC 2 cut(s) 93, 244
FseI GGCCGGCC 2 cut(s) 43, 47
FspBI CTAG 1 cut(s) 1098
GlaI GCGC 1 cut(s) 450
HapII CCGG 6 cut(s) 35, 40, 44, 48, 53, 539
HgaI GACGC 1 cut(s) 984
HhaI GCGC 1 cut(s) 451
Hin1II CATG 5 cut(s) 562, 742, 790, 974, 995
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 1063, 1081
HpaII CCGG 6 cut(s) 35, 40, 44, 48, 53, 539
HphI GGTGA 3 cut(s) 368, 442, 754
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 4 cut(s) 191, 213, 267, 1112
Hpy188III TCNNGA 6 cut(s) 53, 249, 539, 659, 713, 1067
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 92, 400, 421, 955
HpyCH4III ACNGT 2 cut(s) 566, 869
HpyCH4IV ACGT 1 cut(s) 1007
HpyCH4V TGCA 4 cut(s) 184, 527, 547, 562
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 1007
Hsp92II CATG 5 cut(s) 562, 742, 790, 974, 995
HspAI GCGC 1 cut(s) 449
Kpn2I TCCGGA 2 cut(s) 52, 538
KroI GCCGGC 2 cut(s) 39, 43
KroNI GCCGGC 2 cut(s) 41, 45
Kzo9I GATC 3 cut(s) 262, 598, 829
LmnI GCTCC 2 cut(s) 133, 446
Lsp1109I GCAGC 4 cut(s) 184, 382, 713, 716
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 1098
MaeII ACGT 1 cut(s) 1007
MaeIII GTNAC 2 cut(s) 230, 566
MalI GATC 3 cut(s) 264, 600, 831
MbiI CCGCTC 1 cut(s) 1003
MboI GATC 3 cut(s) 262, 598, 829
MboII GAAGA 8 cut(s) 121, 137, 140, 164, 371, 415, 466, 469
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 2 cut(s) 93, 244
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 5 cut(s) 64, 185, 493, 747, 950
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 2 cut(s) 1057, 1090
Mox20I TGGCCA 1 cut(s) 161
Mph1103I ATGCAT 1 cut(s) 549
MroI TCCGGA 2 cut(s) 52, 538
MroNI GCCGGC 2 cut(s) 39, 43
MroXI GAANNNNTTC 1 cut(s) 1106
MscI TGGCCA 1 cut(s) 161
MseI TTAA 4 cut(s) 435, 492, 632, 896
MslI CAYNNNNRTG 1 cut(s) 593
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 6 cut(s) 35, 40, 44, 48, 53, 539
MspR9I CCNGG 3 cut(s) 36, 95, 392
MvaI CCWGG 2 cut(s) 95, 392
NaeI GCCGGC 2 cut(s) 41, 45
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 738
NdeII GATC 3 cut(s) 262, 598, 829
NgoMIV GCCGGC 2 cut(s) 39, 43
NlaIII CATG 5 cut(s) 562, 742, 790, 974, 995
NlaIV GGNNCC 7 cut(s) 6, 91, 92, 210, 241, 242, 511
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 549
PceI AGGCCT 1 cut(s) 935
PdiI GCCGGC 2 cut(s) 41, 45
PdmI GAANNNNTTC 1 cut(s) 1106
PleI GAGTC 2 cut(s) 1057, 1089
PpsI GAGTC 2 cut(s) 1057, 1089
PshBI ATTAAT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 93, 390
PspGI CCWGG 2 cut(s) 93, 390
PspN4I GGNNCC 7 cut(s) 6, 91, 92, 210, 241, 242, 511
PspOMI GGGCCC 2 cut(s) 89, 240
PsuI RGATCY 1 cut(s) 829
PvuII CAGCTG 1 cut(s) 911
RigI GGCCGGCC 2 cut(s) 43, 47
RsaI GTAC 3 cut(s) 419, 866, 996
RsaNI GTAC 3 cut(s) 418, 865, 995
RseI CAYNNNNRTG 1 cut(s) 593
Rsr2I CGGWCCG 1 cut(s) 50
RsrII CGGWCCG 1 cut(s) 50
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 4 cut(s) 435, 492, 632, 896
Sau3AI GATC 3 cut(s) 262, 598, 829
SchI GAGTC 2 cut(s) 1057, 1090
ScrFI CCNGG 3 cut(s) 36, 95, 392
SduI GDGCHC 2 cut(s) 93, 244
SetI ASST 9 cut(s) 138, 274, 343, 387, 432, 524, 811, 913, 1010
SfaNI GCATC 1 cut(s) 385
SfiI GGCCNNNNNGGCC 1 cut(s) 40
SinI GGWCC 3 cut(s) 4, 50, 209
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 5 cut(s) 64, 185, 493, 747, 950
SseBI AGGCCT 1 cut(s) 935
SspMI CTAG 1 cut(s) 1098
StuI AGGCCT 1 cut(s) 935
StyD4I CCNGG 3 cut(s) 34, 93, 390
StyI CCWWGG 1 cut(s) 738
TaaI ACNGT 2 cut(s) 566, 869
TaiI ACGT 1 cut(s) 1010
TaqI TCGA 3 cut(s) 104, 387, 854
TasI AATT 5 cut(s) 64, 185, 493, 747, 950
TatI WGTACW 2 cut(s) 417, 994
TauI GCSGC 6 cut(s) 169, 172, 206, 336, 736, 786
Tru1I TTAA 4 cut(s) 435, 492, 632, 896
Tru9I TTAA 4 cut(s) 435, 492, 632, 896
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 4 cut(s) 172, 395, 701, 704
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 5 cut(s) 122, 711, 740, 930, 1071
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 3 cut(s) 4, 50, 209
VspI ATTAAT 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 2 cut(s) 64, 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 1106
XspI CTAG 1 cut(s) 1098
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.