Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

8006249 .. 8007836

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAAATGGAAATGGGTTTAGTGTTCCTTACAGTTTTTATGGCTGTGATGTCTTCTACAATGGTCTCTGCTCAGTCAAGCTGCACAAACGCGTTGATTAGCATGTCGCCGTGTCTCAACTACATAACTGGAAACTCTACCTCTCCTAATCAGCAATGCTGTAATCAGTTGAGTAGAGTAGTCCAGTCTTCTCCTGACTGTTTGTGTCAAGTCCTTAACGGTGGAGGCTCTCAGCTTGGGATCAATGTTAACCAAACACAAGCTCTTGGTCTGCCTAGGGCTTGTAATGTTCAGACTCCTCCTGTCAGTCGCTGTAATACCGGTGGTGGTGGTGGTGGTTCTACTTCTGACTCTCCTGCAGAATCACCAAACTCTTCAGGACCAGGTAATGGATCGAAAACCGTACCAGTAGGAGAAGGAGACGGACCCCCATCGTCTGATGGAAGCTCTATCAAGTTCTCATTTCCTCTTATTGCCTTCTTCTCCGCGGTTTCCTACATGGCAATCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

170

Amino Acids

17.31

Weight (kDa)

5.04

Isoelectric Point (pI)

65.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 105	1.1e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 105	7.6e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccII	CGCG	2 cut(s)	92, 488
AciI	CCGC	2 cut(s)	486, 488
AclWI	GGATC	2 cut(s)	248, 400
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	90
AgeI	ACCGGT	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	4 cut(s)	81, 235, 263, 447
AluI	AGCT	4 cut(s)	81, 235, 263, 447
Alw26I	GTCTC	3 cut(s)	70, 119, 414
AlwI	GGATC	2 cut(s)	248, 400
AlwNI	CAGNNNCTG	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	81
AsiGI	ACCGGT	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	380, 425
AsuHPI	GGTGA	1 cut(s)	357
AvaII	GGWCC	2 cut(s)	380, 425
AvrII	CCTAGG	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	45, 180
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	434, 439
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	70, 119, 414
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	82
BlnI	CCTAGG	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	2 cut(s)	380, 425
BmgT120I	GGNCC	2 cut(s)	380, 425
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	384
BpiI	GAAGAC	2 cut(s)	45, 180
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	275, 486
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	133, 184, 407
Bse3DI	GCAATG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	275, 486
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	2 cut(s)	86, 245
BseNI	ACTGG	3 cut(s)	133, 184, 407
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	2 cut(s)	92, 488
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	3 cut(s)	70, 119, 414
BsmBI	CGTCTC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	240, 392
BspACI	CCGC	2 cut(s)	486, 488
BspCNI	CTCAG	2 cut(s)	85, 244
BspFNI	CGCG	2 cut(s)	92, 488
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	2 cut(s)	248, 400
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	3 cut(s)	133, 184, 407
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	275, 486
BssMI	GATC	2 cut(s)	240, 392
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	34, 200, 221, 403
Bst6I	CTCTTC	1 cut(s)	379
BstDEI	CTNAG	2 cut(s)	72, 231
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	2 cut(s)	92, 488
BstKTI	GATC	2 cut(s)	243, 395
BstMAI	GTCTC	3 cut(s)	70, 119, 414
BstMBI	GATC	2 cut(s)	240, 392
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	2 cut(s)	92, 488
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	2 cut(s)	45, 180
BtgI	CCRYGG	1 cut(s)	486
CaiI	CAGNNNCTG	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	380, 425
Cfr42I	CCGCGG	1 cut(s)	489
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	2 cut(s)	103, 499
CviJI	RGCY	7 cut(s)	44, 81, 228, 235, 263, 281, 447
CviKI_1	RGCY	7 cut(s)	44, 81, 228, 235, 263, 281, 447
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	72, 231
DpnI	GATC	2 cut(s)	242, 394
DpnII	GATC	2 cut(s)	240, 392
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	380, 425
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	2 cut(s)	106, 502
FaiI	YATR	4 cut(s)	41, 104, 125, 500
FatI	CATG	2 cut(s)	102, 498
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	82
HapII	CCGG	1 cut(s)	321
Hin1II	CATG	2 cut(s)	106, 502
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	295, 350, 362
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	294, 349, 439, 512
Hpy188III	TCNNGA	2 cut(s)	194, 378
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	410, 487
HpyCH4III	ACNGT	4 cut(s)	34, 200, 221, 403
HpyCH4V	TGCA	2 cut(s)	84, 359
HpyF3I	CTNAG	2 cut(s)	72, 231
Hsp92II	CATG	2 cut(s)	106, 502
KspAI	GTTAAC	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	240, 392
Lsp1109I	GCAGC	1 cut(s)	68
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	1 cut(s)	276
MalI	GATC	2 cut(s)	242, 394
MboI	GATC	2 cut(s)	240, 392
MboII	GAAGA	5 cut(s)	45, 180, 366, 472, 499
MluI	ACGCGT	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	289, 344
MnlI	CCTC	4 cut(s)	151, 218, 309, 477
MseI	TTAA	2 cut(s)	216, 249
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	321
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	2 cut(s)	92, 488
NdeII	GATC	2 cut(s)	240, 392
NlaIII	CATG	2 cut(s)	106, 502
NlaIV	GGNNCC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	2 cut(s)	289, 344
PpsI	GAGTC	2 cut(s)	289, 344
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	380, 425
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	312
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SacII	CCGCGG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	216, 249
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	2 cut(s)	240, 392
Sau96I	GGNCC	2 cut(s)	380, 425
SchI	GAGTC	2 cut(s)	289, 344
ScrFI	CCNGG	1 cut(s)	384
SetI	ASST	6 cut(s)	83, 143, 237, 265, 388, 449
SexAI	ACCWGGT	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	357
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SinI	GGWCC	2 cut(s)	380, 425
SsiI	CCGC	2 cut(s)	486, 488
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	4 cut(s)	34, 200, 221, 403
TaqI	TCGA	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	216, 249
Tru9I	TTAA	2 cut(s)	216, 249
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	438
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	380, 425
XceI	RCATGY	1 cut(s)	106
XmaJI	CCTAGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.