Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

12446547 .. 12447874

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGAGCCCCATACTTCTCCCCACCAAACAAATCAAAACACTCAAATCCCAGTTCAGATATACCACAGCTTCCCAATCACTTCCCACACAAACCCAAAAAAACTTATATTCCAATGGCACAAAAGTTTGAGATGTCTCTAGTCCTTGTTCTAGTGACCATGTTCTTGGCAAGGGCAGCAGCCCAGTCTAGTTGCACAAACGTGATCATCAGCATGTCACCCTGCCTCAATTACATTACTGGCAACTCCTCCACCCCTTCTTCCGGGTGCTGCTCGCAGCTCGCCAGCGTTGTCGCTTCCTCCCCACAGTGTTTGTGTGAGGTCCTTAATGGCGGTGGATCATCGCTAGGGATCAATGTGAACCAGACTCAGGCTCTGGCATTGCCTGGTGCTTGCAATGTCCAGACTCCACCACTCAGCAAGTGCAATGCTGCTTCTCCGGCTGGCTCTCCAACAGGAGCAGCAGACTCTCCTAATGAAGGAACCGGTTCAAAAACTGTACCATCGACTCAAGGCGGCATGTCGGACGGGTACTCCATCAAGATGTCCACTCCGACTCAACTCTTTCTTCTCTTGGCTACAGCATACGCTACCTTCACAATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

203

Amino Acids

20.9

Weight (kDa)

8.76

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	333, 516
AclWI	GGATC	2 cut(s)	346, 359
AdeI	CACNNNGTG	1 cut(s)	603
AfaI	GTAC	2 cut(s)	501, 533
AfiI	CCNNNNNNNGG	3 cut(s)	263, 370, 479
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	70, 280
AluI	AGCT	2 cut(s)	70, 280
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	346, 359
AlwNI	CAGNNNCTG	1 cut(s)	376
ApeKI	GCWGC	6 cut(s)	176, 179, 270, 277, 431, 461
AsiGI	ACCGGT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	10
BbvI	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
BccI	CCATC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	387
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	4 cut(s)	140, 152, 189, 347
BfmI	CTRYAG	1 cut(s)	579
BisI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
BlsI	GCNGC	7 cut(s)	178, 181, 272, 279, 433, 463, 518
Bme1390I	CCNGG	2 cut(s)	265, 387
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	2 cut(s)	265, 387
BmrI	ACTGGG	2 cut(s)	45, 178
BmuI	ACTGGG	2 cut(s)	45, 178
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 370, 479
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	51, 184, 244
Bse3DI	GCAATG	3 cut(s)	380, 403, 433
BseBI	CCWGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	263, 370, 479
BseMI	GCAATG	3 cut(s)	380, 403, 433
BseMII	CTCAG	2 cut(s)	383, 430
BseNI	ACTGG	3 cut(s)	51, 184, 244
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
BshTI	ACCGGT	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	264, 440, 486
BslI	CCNNNNNNNGG	3 cut(s)	263, 370, 479
BsmAI	GTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	204, 338, 351
BspACI	CCGC	2 cut(s)	333, 516
BspCNI	CTCAG	2 cut(s)	382, 429
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	346, 359
BsrDI	GCAATG	3 cut(s)	380, 403, 433
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	3 cut(s)	51, 184, 244
BssAI	RCCGGY	1 cut(s)	485
BssMI	GATC	3 cut(s)	204, 338, 351
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	309, 499
BstC8I	GCNNGC	5 cut(s)	275, 282, 286, 394, 445
BstDEI	CTNAG	2 cut(s)	369, 416
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstKTI	GATC	3 cut(s)	207, 341, 354
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	204, 338, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 440
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	217, 523
BstSCI	CCNGG	2 cut(s)	263, 385
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
BstXI	CCANNNNNNTGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	5 cut(s)	275, 282, 286, 394, 445
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	500, 532
CspAI	ACCGGT	1 cut(s)	485
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	3 cut(s)	160, 214, 520
CviJI	RGCY	8 cut(s)	8, 70, 182, 280, 374, 443, 447, 578
CviKI_1	RGCY	8 cut(s)	8, 70, 182, 280, 374, 443, 447, 578
CviQI	GTAC	2 cut(s)	500, 532
DdeI	CTNAG	2 cut(s)	369, 416
DpnI	GATC	3 cut(s)	206, 340, 353
DpnII	GATC	3 cut(s)	204, 338, 351
DraIII	CACNNNGTG	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	3 cut(s)	163, 217, 523
FaiI	YATR	7 cut(s)	13, 62, 108, 161, 215, 521, 586
FatI	CATG	3 cut(s)	159, 213, 519
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
FspBI	CTAG	4 cut(s)	140, 152, 189, 347
GluI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
HapII	CCGG	3 cut(s)	264, 440, 486
Hin1II	CATG	3 cut(s)	163, 217, 523
HinfI	GANTC	5 cut(s)	367, 406, 467, 508, 556
HpaII	CCGG	3 cut(s)	264, 440, 486
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	361, 549
Hpy188I	TCNGA	3 cut(s)	58, 526, 555
Hpy188III	TCNNGA	2 cut(s)	403, 541
Hpy8I	GTNNAC	2 cut(s)	361, 549
HpyAV	CCTTC	3 cut(s)	267, 473, 604
HpyCH4III	ACNGT	2 cut(s)	309, 499
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	195, 396, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 440
HpyF3I	CTNAG	2 cut(s)	369, 416
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	163, 217, 523
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	204, 338, 351
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
MaeI	CTAG	4 cut(s)	140, 152, 189, 347
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	154, 216
MalI	GATC	3 cut(s)	206, 340, 353
MboI	GATC	3 cut(s)	204, 338, 351
MboII	GAAGA	2 cut(s)	252, 560
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
MmeI	TCCRAC	3 cut(s)	476, 504, 578
MnlI	CCTC	4 cut(s)	236, 259, 310, 313
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	3 cut(s)	200, 212, 542
MspI	CCGG	3 cut(s)	264, 440, 486
MspR9I	CCNGG	2 cut(s)	265, 387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	176, 440
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	204, 338, 351
NlaIII	CATG	3 cut(s)	163, 217, 523
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	154, 216
NspI	RCATGY	2 cut(s)	217, 523
OliI	CACNNNNGTG	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	487
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	178, 181, 272, 279, 433, 463, 518
PleI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
PpsI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	501, 533
RsaNI	GTAC	2 cut(s)	500, 532
RseI	CAYNNNNRTG	3 cut(s)	200, 212, 542
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
Sau3AI	GATC	3 cut(s)	204, 338, 351
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
ScrFI	CCNGG	2 cut(s)	265, 387
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	72, 204, 282, 324, 596
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	3 cut(s)	200, 212, 542
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	333, 516
SspMI	CTAG	4 cut(s)	140, 152, 189, 347
StyD4I	CCNGG	2 cut(s)	263, 385
TaaI	ACNGT	2 cut(s)	309, 499
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	519
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	154, 216
TseI	GCWGC	6 cut(s)	176, 179, 270, 277, 431, 461
Tsp45I	GTSAC	2 cut(s)	154, 216
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	477
XceI	RCATGY	2 cut(s)	217, 523
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	4 cut(s)	140, 152, 189, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.