Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

1184193 .. 1186050

Gene Structure 1858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G016900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCACAAAGGATGGAGATGAGTTTGGTCCTTGTCCTGGTGACCATGTTCTTGGCGAAAGCAGCAGCACAATCTAGTTGTACCAATGTGATCATCAGTATGTCACCTTGCCTCAATTACATTACTGGCAACTCCTCAACCCCTTCTTCAGGATGCTGCTCACAGCTTGCTAGCTTTGTCCGCTCCTCTCCACAGTGCTTGTGTGAGGTCCTTAACGGCGGTGGCTCATCACTCGGGATCAATGTCAATCAAACTCAGGCTCTGGCATTACCAGGTGCTTGCAATGTTCAGACTCCACCCCTCAGCCAGTGTAACGCTGCTTCTCCAGCTGACTCTCCAGCAGGAACACCAGAATCTCCGAGTGATGGTCCTTCAGGAACTGGATCCAAAAATGTACCATCAACTGAAGCTGGCTCATCTGGAAACTCCATCAAGTTGTCTACAACTCAACTGTTTGTTGTTCTGGCTGCAGCATATGCTACCCTCTCAATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

166

Amino Acids

16.54

Weight (kDa)

5.05

Isoelectric Point (pI)

61.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	440
AciI	CCGC	2 cut(s)	181, 219
AclWI	GGATC	3 cut(s)	245, 378, 391
AcuI	CTGAAG	3 cut(s)	132, 357, 426
AfaI	GTAC	2 cut(s)	82, 396
AfiI	CCNNNNNNNGG	3 cut(s)	37, 149, 365
AjnI	CCWGG	2 cut(s)	36, 271
AluBI	AGCT	4 cut(s)	166, 174, 329, 410
AluI	AGCT	4 cut(s)	166, 174, 329, 410
AlwI	GGATC	3 cut(s)	245, 378, 391
AlwNI	CAGNNNCTG	2 cut(s)	262, 380
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	6 cut(s)	62, 65, 156, 317, 467, 470
AspS9I	GGNCC	3 cut(s)	28, 208, 368
AsuHPI	GGTGA	2 cut(s)	52, 96
AsuNHI	GCTAGC	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	3 cut(s)	28, 208, 368
BamHI	GGATCC	1 cut(s)	383
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	6 cut(s)	74, 77, 143, 304, 454, 482
BccI	CCATC	4 cut(s)	7, 359, 406, 437
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	38, 273
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	2 cut(s)	75, 171
BfmI	CTRYAG	1 cut(s)	468
BisI	GCNGC	6 cut(s)	63, 66, 157, 318, 468, 471
BlsI	GCNGC	6 cut(s)	64, 67, 158, 319, 469, 472
Bme1390I	CCNGG	2 cut(s)	38, 273
Bme18I	GGWCC	3 cut(s)	28, 208, 368
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	3 cut(s)	28, 208, 368
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	2 cut(s)	38, 273
BmsI	GCATC	1 cut(s)	143
BmtI	GCTAGC	1 cut(s)	174
BpmI	CTGGAG	2 cut(s)	309, 321
Bpu10I	CCTNAGC	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 149, 365
Bse1I	ACTGG	3 cut(s)	130, 307, 385
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	38, 273
BseGI	GGATG	2 cut(s)	18, 158
BseLI	CCNNNNNNNGG	3 cut(s)	37, 149, 365
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	269, 316
BseNI	ACTGG	3 cut(s)	130, 307, 385
BseRI	GAGGAG	2 cut(s)	124, 175
BseXI	GCAGC	6 cut(s)	74, 77, 143, 304, 454, 482
BsiHKCI	CYCGRG	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	37, 149, 365
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	90, 237, 383
BspACI	CCGC	2 cut(s)	181, 219
BspCNI	CTCAG	2 cut(s)	268, 315
BspLI	GGNNCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	472
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	3 cut(s)	245, 378, 391
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	3 cut(s)	130, 307, 385
BssMI	GATC	3 cut(s)	90, 237, 383
Bst2UI	CCWGG	2 cut(s)	38, 273
Bst4CI	ACNGT	2 cut(s)	195, 453
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	168, 172, 280, 412
BstDEI	CTNAG	2 cut(s)	255, 302
BstEII	GGTNACC	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	18, 158
BstKTI	GATC	3 cut(s)	93, 240, 386
BstMBI	GATC	3 cut(s)	90, 237, 383
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 180, 326, 476
BstNI	CCWGG	2 cut(s)	38, 273
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	36, 271
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	6 cut(s)	74, 77, 143, 304, 454, 482
BstX2I	RGATCY	1 cut(s)	383
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	383
BtsCI	GGATG	2 cut(s)	18, 158
BtsIMutI	CAGTG	2 cut(s)	200, 314
Cac8I	GCNNGC	4 cut(s)	168, 172, 280, 412
CaiI	CAGNNNCTG	2 cut(s)	262, 380
Cfr13I	GGNCC	3 cut(s)	28, 208, 368
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	81, 395
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	9 cut(s)	166, 174, 225, 260, 306, 329, 410, 414, 467
CviKI_1	RGCY	9 cut(s)	166, 174, 225, 260, 306, 329, 410, 414, 467
CviQI	GTAC	2 cut(s)	81, 395
DdeI	CTNAG	2 cut(s)	255, 302
DpnI	GATC	3 cut(s)	92, 239, 385
DpnII	GATC	3 cut(s)	90, 237, 383
Eco47I	GGWCC	3 cut(s)	28, 208, 368
Eco57I	CTGAAG	3 cut(s)	132, 357, 426
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	36, 271
FaeI	CATG	1 cut(s)	49
FaiI	YATR	4 cut(s)	47, 101, 475, 477
FatI	CATG	1 cut(s)	45
FauNDI	CATATG	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	6 cut(s)	63, 66, 157, 318, 468, 471
FokI	GGATG	2 cut(s)	25, 165
Fsp4HI	GCNGC	6 cut(s)	63, 66, 157, 318, 468, 471
FspBI	CTAG	2 cut(s)	75, 171
GluI	GCNGC	6 cut(s)	63, 66, 157, 318, 468, 471
GsuI	CTGGAG	2 cut(s)	309, 321
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	3 cut(s)	292, 332, 353
HphI	GGTGA	2 cut(s)	52, 96
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	291, 360
Hpy188III	TCNNGA	4 cut(s)	150, 235, 375, 420
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	2 cut(s)	153, 381
HpyCH4III	ACNGT	2 cut(s)	195, 453
HpyCH4V	TGCA	2 cut(s)	282, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 180, 326, 476
HpyF3I	CTNAG	2 cut(s)	255, 302
Hsp92II	CATG	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 237, 383
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	6 cut(s)	74, 77, 143, 304, 454, 482
LweI	GCATC	1 cut(s)	143
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	2 cut(s)	75, 171
MaeIII	GTNAC	3 cut(s)	40, 102, 311
MalI	GATC	3 cut(s)	92, 239, 385
MbiI	CCGCTC	1 cut(s)	183
MboI	GATC	3 cut(s)	90, 237, 383
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	1 cut(s)	383
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	2 cut(s)	286, 326
MnlI	CCTC	6 cut(s)	122, 145, 196, 199, 311, 494
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	38, 273
MvaI	CCWGG	2 cut(s)	38, 273
MwoI	GCNNNNNNNGC	4 cut(s)	62, 180, 326, 476
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	3 cut(s)	90, 237, 383
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	2 cut(s)	40, 102
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	6 cut(s)	64, 67, 158, 319, 469, 472
PleI	GAGTC	2 cut(s)	286, 326
PpsI	GAGTC	2 cut(s)	286, 326
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	36, 271
PspEI	GGTNACC	1 cut(s)	40
PspGI	CCWGG	2 cut(s)	36, 271
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	3 cut(s)	28, 208, 368
PspPPI	RGGWCCY	1 cut(s)	208
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	2 cut(s)	262, 380
PsuI	RGATCY	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	82, 396
RsaNI	GTAC	2 cut(s)	81, 395
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	6 cut(s)	63, 66, 157, 318, 468, 471
Sau3AI	GATC	3 cut(s)	90, 237, 383
Sau96I	GGNCC	3 cut(s)	28, 208, 368
SchI	GAGTC	2 cut(s)	286, 326
ScrFI	CCNGG	2 cut(s)	38, 273
SetI	ASST	7 cut(s)	109, 168, 176, 210, 277, 331, 412
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	3 cut(s)	28, 208, 368
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	181, 219
SspMI	CTAG	2 cut(s)	75, 171
StyD4I	CCNGG	2 cut(s)	36, 271
TaaI	ACNGT	2 cut(s)	195, 453
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	200, 314
TseFI	GTSAC	2 cut(s)	40, 102
TseI	GCWGC	6 cut(s)	62, 65, 156, 317, 467, 470
Tsp45I	GTSAC	2 cut(s)	40, 102
TspRI	CASTG	2 cut(s)	200, 314
VpaK11BI	GGWCC	3 cut(s)	28, 208, 368
XagI	CCTNNNNNAGG	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	2 cut(s)	75, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.