Prupe.8G238000_v2.0.a1

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0006489
Physical Location & Seq
Forward (+)
20973766 .. 20974818
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G238000.1

Sequence Viewer

Length: 489 bp
ATGGCAGTTAGGGGGATTGAGATTGTGCTAGCTTTGGTCCTTGCAGTGGTTCTGCGGGAAGGCACTGTTGATGCTCAATCAAGCTGCACCAATGTGATCATCAGCATGTCCCCATGCCTTGATTACGTAACAGGAAACTCATCAACCCCATCTTCCTCATGTTGCTCACAGTTTGCTAATGTGGTCAGCTCACAGCCAAAGTGCCTCTGTGAGGTTCTTAATGGAGGCTCCTCTTCCGTTGGTGTGAACATCAATCAGACTCAGGCATTGGCCCTCCCCTCTGCTTGCAAAGTCCAAACACCCCCGCTTAGCCGATGCAGCGGGTCATCTCCAACAGGTTCTCCCTCAGGGGCACCAACTTCTCCTTCAGGGAGTGGATCTAAAACTGTACCATCACCATCACATGGAAATTCTAACAAGATGGCATTTCCTCTGCTGTTCTTCTTGCTCTTCATTGCATCATATGCTTCAACTTCCACAGCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

163

Amino Acids

16.35

Weight (kDa)

8.15

Isoelectric Point (pI)

70.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 404
AciI CCGC 3 cut(s) 55, 305, 321
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 46, 211, 404
AgsI TTSAA 1 cut(s) 471
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 3 cut(s) 32, 84, 189
AluI AGCT 3 cut(s) 32, 84, 189
AlwI GGATC 1 cut(s) 385
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 84, 318
ApoI RAATTY 1 cut(s) 409
AspS9I GGNCC 2 cut(s) 37, 271
AsuHPI GGTGA 1 cut(s) 387
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 71, 330
BccI CCATC 4 cut(s) 157, 400, 406, 415
BclI TGATCA 1 cut(s) 96
BfaI CTAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 85, 319
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 2 cut(s) 86, 320
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 271
BmiI GGNNCC 2 cut(s) 229, 354
BmsI GCATC 3 cut(s) 61, 305, 467
BmtI GCTAGC 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 211, 404
Bse21I CCTNAGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 453
BseLI CCNNNNNNNGG 3 cut(s) 46, 211, 404
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 275, 360
BseRI GAGGAG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 2 cut(s) 71, 330
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 352
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 46, 211, 404
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 96, 377
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 3 cut(s) 55, 305, 321
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 2 cut(s) 274, 359
BspLI GGNNCC 2 cut(s) 229, 354
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 385
BspQI GCTCTTC 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 453
BssMI GATC 2 cut(s) 96, 377
Bst4CI ACNGT 3 cut(s) 67, 171, 388
Bst6I CTCTTC 2 cut(s) 238, 455
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 30, 286
BstDEI CTNAG 3 cut(s) 261, 308, 346
BstENI CCTNNNNNAGG 1 cut(s) 209
BstKTI GATC 2 cut(s) 99, 380
BstMBI GATC 2 cut(s) 96, 377
BstMWI GCNNNNNNNGC 2 cut(s) 318, 464
BstNSI RCATGY 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 355
BstSNI TACGTA 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 71, 330
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
Bsu36I CCTNAGG 1 cut(s) 346
BsuRI GGCC 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 63
Cac8I GCNNGC 2 cut(s) 30, 286
Cfr13I GGNCC 2 cut(s) 37, 271
Csp6I GTAC 1 cut(s) 389
CviAII CATG 4 cut(s) 106, 114, 159, 404
CviJI RGCY 8 cut(s) 32, 84, 189, 196, 228, 272, 312, 482
CviKI_1 RGCY 8 cut(s) 32, 84, 189, 196, 228, 272, 312, 482
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 3 cut(s) 261, 308, 346
DpnI GATC 2 cut(s) 98, 379
DpnII GATC 2 cut(s) 96, 377
Eam1104I CTCTTC 2 cut(s) 238, 455
EarI CTCTTC 2 cut(s) 238, 455
Eco105I TACGTA 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 346
EcoNI CCTNNNNNAGG 1 cut(s) 209
FaeI CATG 4 cut(s) 109, 117, 162, 407
FaiI YATR 6 cut(s) 107, 115, 160, 405, 463, 465
FaqI GGGAC 1 cut(s) 94
FatI CATG 4 cut(s) 105, 113, 158, 403
FauI CCCGC 3 cut(s) 48, 312, 314
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 85, 319
Fsp4HI GCNGC 2 cut(s) 85, 319
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 85, 319
HaeIII GGCC 1 cut(s) 272
Hin1II CATG 4 cut(s) 109, 117, 162, 407
HinfI GANTC 1 cut(s) 259
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 53, 375
HpyCH4III ACNGT 3 cut(s) 67, 171, 388
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 5 cut(s) 44, 87, 288, 318, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 464
HpyF3I CTNAG 3 cut(s) 261, 308, 346
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 4 cut(s) 109, 117, 162, 407
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 2 cut(s) 96, 377
LguI GCTCTTC 1 cut(s) 455
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 117, 248, 321, 333, 354
Lsp1109I GCAGC 2 cut(s) 71, 330
LweI GCATC 3 cut(s) 61, 305, 467
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 98, 379
MboI GATC 2 cut(s) 96, 377
MboII GAAGA 4 cut(s) 144, 225, 433, 442
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 1 cut(s) 409
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 9 cut(s) 166, 205, 215, 218, 241, 284, 289, 355, 441
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 92, 104
MspA1I CMGCKG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 318, 464
NdeI CATATG 1 cut(s) 463
NdeII GATC 2 cut(s) 96, 377
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 109, 117, 162, 407
NlaIV GGNNCC 2 cut(s) 229, 354
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 455
PflMI CCANNNNNTGG 1 cut(s) 404
PkrI GCNGC 2 cut(s) 86, 320
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 229, 354
PspPI GGNCC 2 cut(s) 37, 271
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 2 cut(s) 92, 104
SapI GCTCTTC 1 cut(s) 455
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 85, 319
Sau3AI GATC 2 cut(s) 96, 377
Sau96I GGNCC 2 cut(s) 37, 271
SchI GAGTC 1 cut(s) 253
SduI GDGCHC 1 cut(s) 355
SetI ASST 6 cut(s) 34, 86, 129, 191, 216, 340
SfaNI GCATC 3 cut(s) 61, 305, 467
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 92, 104
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 1 cut(s) 409
SsiI CCGC 3 cut(s) 55, 305, 321
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 67, 171, 388
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 409
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 51, 70
TseI GCWGC 2 cut(s) 84, 318
TspDTI ATGAA 1 cut(s) 442
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 2 cut(s) 51, 70
Van91I CCANNNNNTGG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 109
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.