Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

17490041 .. 17491151

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1196700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCACAAAAGTTTGAGATGTCTCTAGTCCTTGTCCTAGTGACCATGTTCTTGGCAAGGGCAGCAGCCCAGTCTAGTTGCACAAACGTGATCATCAGCATGTCACCCTGCCTCAGTTACATTACTGGCAACTCCTCCACCCCTTCTTCCGGGTGCTGCTCGCAGCTCGCCAGCGTTGTCTCTTCCTCCCCACAGTGTTTGTGTGAGGTCCTTAATGGCGGTGGATCGTCGCTAGGGATCAATGTGAACCGGACTCAGGCTCTGGCATTGCCTGGTGCTTGCAATGTCCAGACTCCACCACTCAGCCAGTGCAATGCTGCTTCTCCGGCTGGCTCTCCAACAGGAGCAGCAGACTCTCCTAATGAAGGTCCTTCAGGAACCGGTTCAAAAACTGTACCATCGACTCAAGGCAGCTCGTCAGACGGAAACTCCATCAAGATGTCCACTCCGACTCAACTCTTTCTTCTCCTGGCTACAGCATATGCTACCTTCACAATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

168

Amino Acids

16.72

Weight (kDa)

6.02

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	11 - 104	3.3e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 104	9.2e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	2 cut(s)	232, 245
AcuI	CTGAAG	1 cut(s)	357
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	3 cut(s)	149, 256, 365
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	2 cut(s)	271, 468
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	166, 414
AluI	AGCT	2 cut(s)	166, 414
Alw26I	GTCTC	2 cut(s)	27, 184
AlwI	GGATC	2 cut(s)	232, 245
AlwNI	CAGNNNCTG	1 cut(s)	262
ApeKI	GCWGC	7 cut(s)	62, 65, 156, 163, 317, 347, 411
AsiGI	ACCGGT	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	208, 368
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	96
AvaII	GGWCC	2 cut(s)	208, 368
BbvI	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 359, 423
BccI	CCATC	2 cut(s)	406, 440
BciT130I	CCWGG	2 cut(s)	273, 470
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	27, 184
BfaI	CTAG	4 cut(s)	26, 38, 75, 233
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 348, 412
BlsI	GCNGC	7 cut(s)	64, 67, 158, 165, 319, 349, 413
Bme1390I	CCNGG	3 cut(s)	151, 273, 470
Bme18I	GGWCC	2 cut(s)	208, 368
BmgT120I	GGNCC	2 cut(s)	208, 368
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	3 cut(s)	151, 273, 470
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	151
BsaWI	WCCGGW	2 cut(s)	249, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 256, 365
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	70, 130, 307
Bse3DI	GCAATG	3 cut(s)	266, 289, 319
BseBI	CCWGG	2 cut(s)	273, 470
BseLI	CCNNNNNNNGG	3 cut(s)	149, 256, 365
BseMI	GCAATG	3 cut(s)	266, 289, 319
BseMII	CTCAG	3 cut(s)	127, 269, 316
BseNI	ACTGG	3 cut(s)	70, 130, 307
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 359, 423
BshTI	ACCGGT	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	150, 250, 326, 381
BslI	CCNNNNNNNGG	3 cut(s)	149, 256, 365
BsmAI	GTCTC	2 cut(s)	27, 184
Bsp143I	GATC	3 cut(s)	90, 224, 237
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	3 cut(s)	126, 268, 315
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	232, 245
BsrDI	GCAATG	3 cut(s)	266, 289, 319
BsrFI	RCCGGY	1 cut(s)	380
BsrI	ACTGG	3 cut(s)	70, 130, 307
BssAI	RCCGGY	1 cut(s)	380
BssMI	GATC	3 cut(s)	90, 224, 237
Bst2UI	CCWGG	2 cut(s)	273, 470
Bst4CI	ACNGT	2 cut(s)	195, 394
Bst6I	CTCTTC	1 cut(s)	187
BstC8I	GCNNGC	5 cut(s)	161, 168, 172, 280, 331
BstDEI	CTNAG	3 cut(s)	113, 255, 302
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstKTI	GATC	3 cut(s)	93, 227, 240
BstMAI	GTCTC	2 cut(s)	27, 184
BstMBI	GATC	3 cut(s)	90, 224, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 326
BstNI	CCWGG	2 cut(s)	273, 470
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	149, 271, 468
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 359, 423
BstXI	CCANNNNNNTGG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	200, 314
Cac8I	GCNNGC	5 cut(s)	161, 168, 172, 280, 331
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	208, 368
Csp6I	GTAC	1 cut(s)	395
CspAI	ACCGGT	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	46, 100
CviJI	RGCY	8 cut(s)	68, 166, 260, 306, 329, 333, 414, 473
CviKI_1	RGCY	8 cut(s)	68, 166, 260, 306, 329, 333, 414, 473
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	3 cut(s)	113, 255, 302
DpnI	GATC	3 cut(s)	92, 226, 239
DpnII	GATC	3 cut(s)	90, 224, 237
DraIII	CACNNNGTG	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	208, 368
Eco57I	CTGAAG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoO109I	RGGNCCY	2 cut(s)	208, 368
EcoRII	CCWGG	2 cut(s)	271, 468
FaeI	CATG	2 cut(s)	49, 103
FaiI	YATR	4 cut(s)	47, 101, 481, 483
FatI	CATG	2 cut(s)	45, 99
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 348, 412
Fsp4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 348, 412
FspBI	CTAG	4 cut(s)	26, 38, 75, 233
GluI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 348, 412
HapII	CCGG	4 cut(s)	150, 250, 326, 381
Hin1II	CATG	2 cut(s)	49, 103
HinfI	GANTC	5 cut(s)	253, 292, 353, 403, 451
HpaII	CCGG	4 cut(s)	150, 250, 326, 381
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	247, 444
Hpy188I	TCNGA	2 cut(s)	421, 450
Hpy188III	TCNNGA	3 cut(s)	289, 375, 436
Hpy8I	GTNNAC	2 cut(s)	247, 444
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	4 cut(s)	153, 359, 381, 499
HpyCH4III	ACNGT	2 cut(s)	195, 394
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	81, 282, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 326
HpyF3I	CTNAG	3 cut(s)	113, 255, 302
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	49, 103
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 224, 237
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	7 cut(s)	74, 77, 143, 175, 304, 359, 423
MaeI	CTAG	4 cut(s)	26, 38, 75, 233
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	40, 102, 116
MalI	GATC	3 cut(s)	92, 226, 239
MboI	GATC	3 cut(s)	90, 224, 237
MboII	GAAGA	3 cut(s)	138, 174, 455
MlyI	GAGTC	5 cut(s)	247, 286, 347, 397, 445
MmeI	TCCRAC	2 cut(s)	362, 473
MnlI	CCTC	4 cut(s)	122, 145, 196, 199
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	3 cut(s)	86, 98, 437
MspI	CCGG	4 cut(s)	150, 250, 326, 381
MspR9I	CCNGG	3 cut(s)	151, 273, 470
MvaI	CCWGG	2 cut(s)	273, 470
MwoI	GCNNNNNNNGC	2 cut(s)	62, 326
NciI	CCSGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	3 cut(s)	90, 224, 237
NlaIII	CATG	2 cut(s)	49, 103
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	40, 102
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	7 cut(s)	64, 67, 158, 165, 319, 349, 413
PleI	GAGTC	5 cut(s)	247, 286, 347, 397, 445
PpsI	GAGTC	5 cut(s)	247, 286, 347, 397, 445
PpuMI	RGGWCCY	2 cut(s)	208, 368
Psp5II	RGGWCCY	2 cut(s)	208, 368
Psp6I	CCWGG	2 cut(s)	271, 468
PspGI	CCWGG	2 cut(s)	271, 468
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	208, 368
PspPPI	RGGWCCY	2 cut(s)	208, 368
PstNI	CAGNNNCTG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	3 cut(s)	86, 98, 437
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	7 cut(s)	63, 66, 157, 164, 318, 348, 412
Sau3AI	GATC	3 cut(s)	90, 224, 237
Sau96I	GGNCC	2 cut(s)	208, 368
SchI	GAGTC	5 cut(s)	247, 286, 347, 397, 445
ScrFI	CCNGG	3 cut(s)	151, 273, 470
SetI	ASST	6 cut(s)	90, 168, 210, 370, 416, 491
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	2 cut(s)	208, 368
SmiMI	CAYNNNNRTG	3 cut(s)	86, 98, 437
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	4 cut(s)	26, 38, 75, 233
StyD4I	CCNGG	3 cut(s)	149, 271, 468
TaaI	ACNGT	2 cut(s)	195, 394
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	200, 314
TseFI	GTSAC	2 cut(s)	40, 102
TseI	GCWGC	7 cut(s)	62, 65, 156, 163, 317, 347, 411
Tsp45I	GTSAC	2 cut(s)	40, 102
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	200, 314
VpaK11BI	GGWCC	2 cut(s)	208, 368
XagI	CCTNNNNNAGG	1 cut(s)	363
XceI	RCATGY	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	4 cut(s)	26, 38, 75, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.