Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Forward (+)

19986489 .. 19987503

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTCACAAAGGATTGGAATGAGTCTTGTCCTCGTTCTAGTGGCCATGTTCTTGGCAAGATCAGCAGCACAGTCAGATTGCACAAATGTGATTATCAGCATGTCCCCTTGTCTCAACTACATCACTGGGAACTCCTCAACTCCATCTTCAGGATGCTGTTCGCAGCTTTCTAGCGTTGTGCGATCATCCCCACAGTGCTTGTGCCAGGTTCTTAATGGCGGTGGATCATCACTAGGGATCAATGTCAATCAAACACAGGCTCTCGCTCTACCTGGTGCTTGCAATGTTCAGACTCCACCCATCAGCCAGTGTAACGCTGCTTCTCCAGCTGGCTCTCCTGCAGGAACACCTGATGATTCATCAAACACAGTTCCTTCAGGAAGTGGATCTAAAACTGTACCATCAACTGATGATGGCTCATCAGATGGAAACTCCATCAAGTTGTCTATGACTCAACTCATTGTGCTATTTGCTGCAGCATTTGCTACTCTCTCAATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

168

Amino Acids

16.75

Weight (kDa)

5.43

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	12 - 104	8.9e-20	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 104	7e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	3 cut(s)	232, 245, 394
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	132, 360
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	149
AjnI	CCWGG	2 cut(s)	204, 271
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	166, 329
AluI	AGCT	2 cut(s)	166, 329
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	232, 245, 394
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	5 cut(s)	65, 163, 317, 473, 476
BalI	TGGCCA	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
BbvI	GCAGC	5 cut(s)	77, 175, 304, 460, 488
BccI	CCATC	6 cut(s)	151, 308, 407, 409, 419, 443
BciT130I	CCWGG	2 cut(s)	206, 273
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	3 cut(s)	38, 171, 233
BfmI	CTRYAG	2 cut(s)	339, 474
BisI	GCNGC	5 cut(s)	66, 164, 318, 474, 477
BlsI	GCNGC	5 cut(s)	67, 165, 319, 475, 478
Bme1390I	CCNGG	2 cut(s)	206, 273
BmrFI	CCNGG	2 cut(s)	206, 273
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	130, 307
Bse3DI	GCAATG	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	206, 273
BseGI	GGATG	2 cut(s)	158, 185
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	130, 307
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	5 cut(s)	77, 175, 304, 460, 488
BshFI	GGCC	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	44
Bsp143I	GATC	5 cut(s)	59, 182, 224, 237, 386
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	44
BspMAI	CTGCAG	2 cut(s)	343, 478
BspPI	GGATC	3 cut(s)	232, 245, 394
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	130, 307
BssMI	GATC	5 cut(s)	59, 182, 224, 237, 386
Bst2UI	CCWGG	2 cut(s)	206, 273
Bst4CI	ACNGT	4 cut(s)	72, 195, 370, 397
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	280, 331
BstF5I	GGATG	2 cut(s)	158, 185
BstKTI	GATC	5 cut(s)	62, 185, 227, 240, 389
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	59, 182, 224, 237, 386
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 326, 482
BstNI	CCWGG	2 cut(s)	206, 273
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	204, 271
BstSFI	CTRYAG	2 cut(s)	339, 474
BstV1I	GCAGC	5 cut(s)	77, 175, 304, 460, 488
BstX2I	RGATCY	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	158, 185
BtsIMutI	CAGTG	4 cut(s)	123, 200, 314, 499
Cac8I	GCNNGC	2 cut(s)	280, 331
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	46, 100
CviJI	RGCY	7 cut(s)	44, 166, 260, 306, 329, 333, 417
CviKI_1	RGCY	7 cut(s)	44, 166, 260, 306, 329, 333, 417
CviQI	GTAC	1 cut(s)	398
DpnI	GATC	5 cut(s)	61, 184, 226, 239, 388
DpnII	GATC	5 cut(s)	59, 182, 224, 237, 386
EaeI	YGGCCR	1 cut(s)	42
Eco57I	CTGAAG	2 cut(s)	132, 360
EcoRII	CCWGG	2 cut(s)	204, 271
FaeI	CATG	2 cut(s)	49, 103
FaiI	YATR	3 cut(s)	47, 101, 449
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	45, 99
Fnu4HI	GCNGC	5 cut(s)	66, 164, 318, 474, 477
FokI	GGATG	2 cut(s)	165, 172
Fsp4HI	GCNGC	5 cut(s)	66, 164, 318, 474, 477
FspBI	CTAG	3 cut(s)	38, 171, 233
GluI	GCNGC	5 cut(s)	66, 164, 318, 474, 477
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	49, 103
HinfI	GANTC	4 cut(s)	22, 292, 356, 451
Hpy188I	TCNGA	3 cut(s)	76, 291, 424
Hpy188III	TCNNGA	2 cut(s)	150, 378
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	4 cut(s)	72, 195, 370, 397
HpyCH4V	TGCA	5 cut(s)	81, 282, 341, 476, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 326, 482
Hsp92II	CATG	2 cut(s)	49, 103
Kzo9I	GATC	5 cut(s)	59, 182, 224, 237, 386
Lsp1109I	GCAGC	5 cut(s)	77, 175, 304, 460, 488
LweI	GCATC	1 cut(s)	143
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	3 cut(s)	38, 171, 233
MaeIII	GTNAC	2 cut(s)	3, 311
MalI	GATC	5 cut(s)	61, 184, 226, 239, 388
MboI	GATC	5 cut(s)	59, 182, 224, 237, 386
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	31, 286, 445
MnlI	CCTC	2 cut(s)	41, 145
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	206, 273
MvaI	CCWGG	2 cut(s)	206, 273
MwoI	GCNNNNNNNGC	3 cut(s)	62, 326, 482
NdeII	GATC	5 cut(s)	59, 182, 224, 237, 386
NlaIII	CATG	2 cut(s)	49, 103
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	5 cut(s)	67, 165, 319, 475, 478
PleI	GAGTC	3 cut(s)	30, 286, 445
PpsI	GAGTC	3 cut(s)	30, 286, 445
Psp6I	CCWGG	2 cut(s)	204, 271
PspGI	CCWGG	2 cut(s)	204, 271
PstI	CTGCAG	2 cut(s)	343, 478
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	5 cut(s)	66, 164, 318, 474, 477
Sau3AI	GATC	5 cut(s)	59, 182, 224, 237, 386
SbfI	CCTGCAGG	1 cut(s)	343
SchI	GAGTC	3 cut(s)	31, 286, 445
ScrFI	CCNGG	2 cut(s)	206, 273
SdaI	CCTGCAGG	1 cut(s)	343
SetI	ASST	5 cut(s)	168, 210, 274, 331, 352
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	2 cut(s)	339, 474
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse8387I	CCTGCAGG	1 cut(s)	343
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	3 cut(s)	38, 171, 233
StyD4I	CCNGG	2 cut(s)	204, 271
TaaI	ACNGT	4 cut(s)	72, 195, 370, 397
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	130, 200, 314
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	65, 163, 317, 473, 476
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	3 cut(s)	130, 200, 314
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	3 cut(s)	38, 171, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.