Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Forward (+)

40090036 .. 40090805

Gene Structure 770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1282400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCATTTAGGAGGAGGATTAATGAATTAATGGTGCTAACTTTGGTCTTTTTTATGGCTTTGTGGGAAGGAGGCAGAGTTGTTGCTCAATCTTCAAGTTGCACCAAAGTGATAATTAGCATGTCCCCATGCCTTGATTATGTAACAGGAAACTCATCATCCCCATCTTCCTCATGCTGCTCACAGTTTGCCAATGTAGTCAGCTCTCAGCCACAGTGCCTCTGTGAGGTCCTCAATGGAGGTGCTTCTTCACTTGGTGTGACTATCAATCAGACTCAGGCCTTGGCTCTCCCCTCTGCCTGCAATGTCCAAACTCCGCCGGTTAGCCGCTGCAACGGGTCTTCCGCTCCAGCAGCTTCTCCTTCGCCATCAACTGACGTGGGGTCTTCAGATGCAAATTCTAACAAGTTGGCATTTTCTCTGCTGTTCTTCTTGCTCTTCGTTGTATCATATGCCTCAACATCCACAGCCAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

160

Amino Acids

16.57

Weight (kDa)

7.49

Isoelectric Point (pI)

72.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	30 - 111	7.2e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 111	2.1e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	347
AciI	CCGC	3 cut(s)	317, 328, 345
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	96
AhdI	GACNNNNNGTC	1 cut(s)	382
AjiI	CACGTC	1 cut(s)	379
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	204, 356
AluI	AGCT	2 cut(s)	204, 356
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	3 cut(s)	177, 330, 353
ApoI	RAATTY	1 cut(s)	397
AseI	ATTAAT	2 cut(s)	21, 29
AspS9I	GGNCC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	333, 378
BbvI	GCAGC	3 cut(s)	164, 317, 365
BccI	CCATC	2 cut(s)	172, 376
BisI	GCNGC	4 cut(s)	178, 328, 331, 354
BlsI	GCNGC	4 cut(s)	179, 329, 332, 355
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	229
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	2 cut(s)	333, 378
BpmI	CTGGAG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse118I	RCCGGY	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	158, 461
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	221, 290
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	164, 317, 365
BshFI	GGCC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	281
BspACI	CCGC	3 cut(s)	317, 328, 345
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	220, 289
BspQI	GCTCTTC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	186, 216
Bst6I	CTCTTC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	207, 276
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	158, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	124
BstV1I	GCAGC	3 cut(s)	164, 317, 365
BstV2I	GAAGAC	2 cut(s)	333, 378
BsuRI	GGCC	1 cut(s)	281
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	158, 461
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	360, 395
CviAII	CATG	3 cut(s)	121, 129, 174
CviJI	RGCY	8 cut(s)	59, 204, 211, 281, 287, 327, 356, 470
CviKI_1	RGCY	8 cut(s)	59, 204, 211, 281, 287, 327, 356, 470
DdeI	CTNAG	2 cut(s)	207, 276
DraIII	CACNNNGTG	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	443
EciI	GGCGGA	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	124, 132, 177
FaiI	YATR	7 cut(s)	56, 122, 130, 141, 175, 451, 453
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	120, 128, 173
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	178, 328, 331, 354
FokI	GGATG	2 cut(s)	145, 448
Fsp4HI	GCNGC	4 cut(s)	178, 328, 331, 354
GluI	GCNGC	4 cut(s)	178, 328, 331, 354
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	3 cut(s)	124, 132, 177
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	273, 391
HpyAV	CCTTC	2 cut(s)	62, 372
HpyCH4III	ACNGT	2 cut(s)	186, 216
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	4 cut(s)	102, 303, 333, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	207, 276
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	124, 132, 177
LguI	GCTCTTC	1 cut(s)	443
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	5 cut(s)	132, 263, 313, 333, 363
Lsp1109I	GCAGC	3 cut(s)	164, 317, 365
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	142, 259
MbiI	CCGCTC	1 cut(s)	347
MboII	GAAGA	7 cut(s)	84, 159, 240, 333, 378, 421, 430
MluCI	AATT	4 cut(s)	26, 114, 397, 472
MlyI	GAGTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	21, 29
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeI	CATATG	1 cut(s)	451
NlaIII	CATG	3 cut(s)	124, 132, 177
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	443
PkrI	GCNGC	4 cut(s)	179, 329, 332, 355
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	229
PshBI	ATTAAT	2 cut(s)	21, 29
Psp5II	RGGWCCY	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	229
PspPPI	RGGWCCY	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	21, 29
SatI	GCNGC	4 cut(s)	178, 328, 331, 354
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	268
SetI	ASST	5 cut(s)	206, 231, 244, 358, 381
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	26, 114, 397, 472
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	317, 328, 345
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	186, 216
TaiI	ACGT	1 cut(s)	381
TasI	AATT	4 cut(s)	26, 114, 397, 472
TauI	GCSGC	1 cut(s)	330
Tru1I	TTAA	2 cut(s)	21, 29
Tru9I	TTAA	2 cut(s)	21, 29
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	177, 330, 353
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	229
VspI	ATTAAT	2 cut(s)	21, 29
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.