MD11G1282100.v1.1

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006489
Physical Location & Seq
Forward (+)
40069318 .. 40069662
345 bp
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UTR
Exon/CDS
Intron
MD11G1282100.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGCATTTAGGAGGAGGATTAATGAATTAATGGTGCTAACTTTGGTCTTTTTTATGGCTTTGTGGGAAGGAGGCAGAGTTGTTGCTCAATCTTCAAGTTGCACCAAAGTGATAATTAGCATGTCCCCATGCCTTGATTATGTAACAGGAAACTCATCATCCCCATCTTCCTCATGCTGCTCACAGTTTGCCAATGTAGTCAGCTCTCAGCCACAGTGCCTCTGTGAGGTCCTCAATGGAGGTGCTTCTTCACTTGGTGTGACTATCAATCAGACTCAGGCCTTGGCTCTCCCCTCTGCCTGCAATGTCCAAACTCCGCCGGTTAGCCGCTGCAACGGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

115

Amino Acids

12.02

Weight (kDa)

8.17

Isoelectric Point (pI)

76.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 30 - 111 2.6e-19 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 111 8.2e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 317, 328
AdeI CACNNNGTG 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 96
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 177, 330
AseI ATTAAT 2 cut(s) 21, 29
AspS9I GGNCC 1 cut(s) 229
AvaII GGWCC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 164, 317
BccI CCATC 1 cut(s) 172
BisI GCNGC 3 cut(s) 178, 328, 331
BlsI GCNGC 3 cut(s) 179, 329, 332
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 221, 290
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 164, 317
BshFI GGCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 281
BspACI CCGC 2 cut(s) 317, 328
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 220, 289
BsrDI GCAATG 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 186, 216, 338
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 207, 276
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 164, 317
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 229
CviAII CATG 3 cut(s) 121, 129, 174
CviJI RGCY 6 cut(s) 59, 204, 211, 281, 287, 327
CviKI_1 RGCY 6 cut(s) 59, 204, 211, 281, 287, 327
DdeI CTNAG 2 cut(s) 207, 276
DraIII CACNNNGTG 1 cut(s) 257
EciI GGCGGA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 124, 132, 177
FaiI YATR 7 cut(s) 56, 122, 130, 141, 175, 341, 343
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 120, 128, 173
Fnu4HI GCNGC 3 cut(s) 178, 328, 331
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 3 cut(s) 178, 328, 331
GluI GCNGC 3 cut(s) 178, 328, 331
HaeIII GGCC 1 cut(s) 281
HapII CCGG 1 cut(s) 320
Hin1II CATG 3 cut(s) 124, 132, 177
HinfI GANTC 1 cut(s) 274
HpaII CCGG 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 3 cut(s) 186, 216, 338
HpyCH4V TGCA 3 cut(s) 102, 303, 333
HpyF3I CTNAG 2 cut(s) 207, 276
Hsp92II CATG 3 cut(s) 124, 132, 177
LpnPI CCDG 4 cut(s) 132, 263, 313, 333
Lsp1109I GCAGC 2 cut(s) 164, 317
MaeIII GTNAC 2 cut(s) 142, 259
MboII GAAGA 3 cut(s) 84, 159, 240
MluCI AATT 2 cut(s) 26, 114
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 9 cut(s) 6, 9, 65, 181, 220, 230, 233, 242, 304
MseI TTAA 2 cut(s) 21, 29
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 1 cut(s) 320
NlaIII CATG 3 cut(s) 124, 132, 177
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 107
PceI AGGCCT 1 cut(s) 281
PkrI GCNGC 3 cut(s) 179, 329, 332
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PpuMI RGGWCCY 1 cut(s) 229
PshBI ATTAAT 2 cut(s) 21, 29
Psp5II RGGWCCY 1 cut(s) 229
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 21, 29
SatI GCNGC 3 cut(s) 178, 328, 331
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 268
SetI ASST 3 cut(s) 206, 231, 244
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 2 cut(s) 26, 114
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 2 cut(s) 317, 328
StuI AGGCCT 1 cut(s) 281
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 186, 216, 338
TasI AATT 2 cut(s) 26, 114
TauI GCSGC 1 cut(s) 330
Tru1I TTAA 2 cut(s) 21, 29
Tru9I TTAA 2 cut(s) 21, 29
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 177, 330
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 229
VspI ATTAAT 2 cut(s) 21, 29
XagI CCTNNNNNAGG 1 cut(s) 224
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.