Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

12563729 .. 12564518

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g16830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCACGAAAGTTTGAGATGTCTCTAGTCCTTGTCCTAGCGACCATGTTCTTGGCAGGGGCAGCAGCACAGTCCAGTTGCACAAATGTGATCATCAGCATGTCACCCTGCCTAAGTTACATCACTGGAAACTCCTCAACCCCTTCTTCCCGATGCTGCTCGCAGCTAGCTAGCGTTGTCGCTTCCTCCCCACAGTGCTTGTGTGAGGTTCTTAACGGCGGTGGATCATCTCTGGGGGTCAACGTGAATCGGACTCGGGCTCTGGCATTGCCTGGTGCTTGCAATGTCCAGACTCCACCACTCAGCCAGTGTAACGCCGGTTCTCCAGCTGACTCACCAACAGGAGCAGCAGACTCTCCAAATAGTCCTTCAGGAACCGGATCAAAAAATGTACCATCGACTCAAGGTGGCTCGTCGGCCGGCAACTCCATCAAGATGTCTACCACTACTCAACTCTTTCTTCTCTTGGCTGCGGCATATGCTATCTTTACAATGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

167

Amino Acids

16.59

Weight (kDa)

8.43

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	440
AciI	CCGC	2 cut(s)	219, 473
AclWI	GGATC	2 cut(s)	232, 388
AcoI	YGGCCR	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	393
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	166, 170, 329
AluI	AGCT	3 cut(s)	166, 170, 329
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	232, 388
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	6 cut(s)	62, 65, 156, 163, 347, 470
AsuHPI	GGTGA	2 cut(s)	96, 327
AsuNHI	GCTAGC	2 cut(s)	166, 170
AvaI	CYCGRG	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	262
BbvI	GCAGC	6 cut(s)	74, 77, 143, 175, 359, 457
BccI	CCATC	2 cut(s)	403, 437
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	4 cut(s)	26, 38, 167, 171
BisI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
BlsI	GCNGC	7 cut(s)	64, 67, 158, 165, 349, 472, 475
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	143
BmtI	GCTAGC	2 cut(s)	170, 174
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	377
Bse118I	RCCGGY	2 cut(s)	317, 419
Bse1I	ACTGG	3 cut(s)	75, 130, 307
Bse3DI	GCAATG	2 cut(s)	266, 289
BseBI	CCWGG	1 cut(s)	273
BseMI	GCAATG	2 cut(s)	266, 289
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	3 cut(s)	75, 130, 307
BseRI	GAGGAG	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	6 cut(s)	74, 77, 143, 175, 359, 457
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	318, 378, 420
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	419
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	90, 224, 380
BspACI	CCGC	2 cut(s)	219, 473
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	376
BspOI	GCTAGC	2 cut(s)	170, 174
BspPI	GGATC	2 cut(s)	232, 388
BsrDI	GCAATG	2 cut(s)	266, 289
BsrFI	RCCGGY	2 cut(s)	317, 419
BsrI	ACTGG	3 cut(s)	75, 130, 307
BssAI	RCCGGY	2 cut(s)	317, 419
BssMI	GATC	3 cut(s)	90, 224, 380
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	72, 195
BstC8I	GCNNGC	5 cut(s)	161, 168, 172, 280, 421
BstDEI	CTNAG	2 cut(s)	113, 302
BstKTI	GATC	3 cut(s)	93, 227, 383
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	3 cut(s)	90, 224, 380
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 479
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	6 cut(s)	74, 77, 143, 175, 359, 457
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstZI	CGGCCG	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	419
BtsIMutI	CAGTG	3 cut(s)	123, 200, 314
Cac8I	GCNNGC	5 cut(s)	161, 168, 172, 280, 421
Cfr10I	RCCGGY	2 cut(s)	317, 419
Csp6I	GTAC	1 cut(s)	392
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	46, 100
CviJI	RGCY	8 cut(s)	166, 170, 260, 306, 329, 411, 419, 470
CviKI_1	RGCY	8 cut(s)	166, 170, 260, 306, 329, 411, 419, 470
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	113, 302
DpnI	GATC	3 cut(s)	92, 226, 382
DpnII	GATC	3 cut(s)	90, 224, 380
EaeI	YGGCCR	1 cut(s)	417
EagI	CGGCCG	1 cut(s)	417
EclXI	CGGCCG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	262
Eco52I	CGGCCG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	2 cut(s)	49, 103
FaiI	YATR	4 cut(s)	47, 101, 478, 480
FatI	CATG	2 cut(s)	45, 99
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
FspBI	CTAG	4 cut(s)	26, 38, 167, 171
GluI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	3 cut(s)	318, 378, 420
Hin1II	CATG	2 cut(s)	49, 103
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	6 cut(s)	247, 253, 292, 332, 353, 400
HpaII	CCGG	3 cut(s)	318, 378, 420
HphI	GGTGA	2 cut(s)	96, 327
Hpy166II	GTNNAC	2 cut(s)	241, 441
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	4 cut(s)	150, 289, 372, 433
Hpy8I	GTNNAC	2 cut(s)	241, 441
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	153, 378
HpyCH4III	ACNGT	2 cut(s)	72, 195
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	81, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 479
HpyF3I	CTNAG	2 cut(s)	113, 302
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	49, 103
KroI	GCCGGC	1 cut(s)	419
KroNI	GCCGGC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 224, 380
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	6 cut(s)	74, 77, 143, 175, 359, 457
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	4 cut(s)	26, 38, 167, 171
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	102, 116, 311
MalI	GATC	3 cut(s)	92, 226, 382
MboI	GATC	3 cut(s)	90, 224, 380
MboII	GAAGA	2 cut(s)	138, 452
MhlI	GDGCHC	1 cut(s)	262
MlyI	GAGTC	5 cut(s)	247, 286, 326, 347, 394
MnlI	CCTC	3 cut(s)	145, 196, 199
MroNI	GCCGGC	1 cut(s)	419
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	3 cut(s)	86, 98, 434
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	318, 378, 420
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	62, 479
NaeI	GCCGGC	1 cut(s)	421
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	3 cut(s)	90, 224, 380
NgoMIV	GCCGGC	1 cut(s)	419
NheI	GCTAGC	2 cut(s)	166, 170
NlaIII	CATG	2 cut(s)	49, 103
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	102
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	64, 67, 158, 165, 349, 472, 475
PleI	GAGTC	5 cut(s)	247, 286, 326, 347, 394
PpsI	GAGTC	5 cut(s)	247, 286, 326, 347, 394
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	376
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	3 cut(s)	86, 98, 434
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
Sau3AI	GATC	3 cut(s)	90, 224, 380
SchI	GAGTC	5 cut(s)	247, 286, 326, 347, 394
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	6 cut(s)	168, 172, 210, 246, 331, 409
SfaNI	GCATC	1 cut(s)	143
SmiMI	CAYNNNNRTG	3 cut(s)	86, 98, 434
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SsiI	CCGC	2 cut(s)	219, 473
SspMI	CTAG	4 cut(s)	26, 38, 167, 171
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	72, 195
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	398
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	130, 200, 314
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	6 cut(s)	62, 65, 156, 163, 347, 470
Tsp45I	GTSAC	1 cut(s)	102
TspRI	CASTG	3 cut(s)	130, 200, 314
XceI	RCATGY	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	440
XspI	CTAG	4 cut(s)	26, 38, 167, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.