Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

17065485 .. 17066616

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1196200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCACAAAAGTTTGAGATGTCTCTAGTCCTTGTCCTAGTGACCATGTTCTTCGCAAGGGCAGCAGCACAGTCTAGTTGCACAAATGTGATCATCAGCATGTCACCCTGCCTCAGTTACATCACTGGAAACTCCTCAACCCCTACTTCCGGATGCTGCTCGCAGCTCGCTAGCGTTGTCGCTTCCTCCCCACAGTGCTTGTGTGAGGTTCTTAACGGCGGTGGATCATCTCTGGGGGTCAACGTGAATCGGACTCAGGCTCTGGCATTGCCTGGTGCTTGCAATGTCCAGACCCCACCACTCAGCCAGTGTAACGCCGGTTCTCCAGCTGACTCTCCAACAGGAGCAGCAGACACTCCAAATAGTCCTTCAGGAAACGGATCAAAAAATGTACCGTCGACTCAAGGTGGCTCGTCGGACGGAAACTCCATCAAGATGTCTGCTACGACTCAACTCTTTCTTCTCTTGGCTGCAGCATATGCTATCTTCACAATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

167

Amino Acids

16.65

Weight (kDa)

5.98

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 104	9.7e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 104	1e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	2 cut(s)	232, 388
AcuI	CTGAAG	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	495
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	166, 329
AluI	AGCT	2 cut(s)	166, 329
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	232, 388
AlwNI	CAGNNNCTG	1 cut(s)	262
Aor13HI	TCCGGA	1 cut(s)	149
ApeKI	GCWGC	7 cut(s)	62, 65, 156, 163, 347, 470, 473
AsuHPI	GGTGA	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	170
BbvI	GCAGC	7 cut(s)	74, 77, 143, 175, 359, 457, 485
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	4 cut(s)	26, 38, 75, 171
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
BlsI	GCNGC	7 cut(s)	64, 67, 158, 165, 349, 472, 475
Bme1390I	CCNGG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	143
BmtI	GCTAGC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	130, 307
Bse3DI	GCAATG	2 cut(s)	266, 289
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	2 cut(s)	266, 289
BseMII	CTCAG	3 cut(s)	127, 269, 316
BseNI	ACTGG	2 cut(s)	130, 307
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	7 cut(s)	74, 77, 143, 175, 359, 457, 485
BsiSI	CCGG	2 cut(s)	150, 318
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	90, 224, 380
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	3 cut(s)	126, 268, 315
BspEI	TCCGGA	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	232, 388
BsrDI	GCAATG	2 cut(s)	266, 289
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	130, 307
BssAI	RCCGGY	1 cut(s)	317
BssMI	GATC	3 cut(s)	90, 224, 380
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	72, 195, 396
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	161, 168, 172, 280
BstDEI	CTNAG	3 cut(s)	113, 255, 302
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	93, 227, 383
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	3 cut(s)	90, 224, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 479
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	7 cut(s)	74, 77, 143, 175, 359, 457, 485
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	3 cut(s)	123, 200, 314
Cac8I	GCNNGC	4 cut(s)	161, 168, 172, 280
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	392
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	2 cut(s)	46, 100
CviJI	RGCY	6 cut(s)	166, 260, 306, 329, 411, 470
CviKI_1	RGCY	6 cut(s)	166, 260, 306, 329, 411, 470
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	3 cut(s)	113, 255, 302
DpnI	GATC	3 cut(s)	92, 226, 382
DpnII	GATC	3 cut(s)	90, 224, 380
DraIII	CACNNNGTG	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	49, 103
FaiI	YATR	4 cut(s)	47, 101, 478, 480
FatI	CATG	2 cut(s)	45, 99
FauNDI	CATATG	1 cut(s)	478
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
FspBI	CTAG	4 cut(s)	26, 38, 75, 171
GluI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
GsuI	CTGGAG	1 cut(s)	309
HapII	CCGG	2 cut(s)	150, 318
Hin1II	CATG	2 cut(s)	49, 103
HincII	GTYRAC	2 cut(s)	241, 399
HindII	GTYRAC	2 cut(s)	241, 399
HinfI	GANTC	5 cut(s)	247, 253, 332, 400, 448
HpaII	CCGG	2 cut(s)	150, 318
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	241, 399
Hpy188I	TCNGA	2 cut(s)	252, 418
Hpy188III	TCNNGA	4 cut(s)	150, 289, 372, 433
Hpy8I	GTNNAC	2 cut(s)	241, 399
Hpy99I	CGWCG	2 cut(s)	400, 418
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	3 cut(s)	72, 195, 396
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	81, 282, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 479
HpyF3I	CTNAG	3 cut(s)	113, 255, 302
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	49, 103
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 224, 380
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	7 cut(s)	74, 77, 143, 175, 359, 457, 485
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	4 cut(s)	26, 38, 75, 171
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	4 cut(s)	40, 102, 116, 311
MalI	GATC	3 cut(s)	92, 226, 382
MboI	GATC	3 cut(s)	90, 224, 380
MboII	GAAGA	3 cut(s)	43, 452, 478
MlyI	GAGTC	4 cut(s)	247, 326, 394, 442
MmeI	TCCRAC	2 cut(s)	362, 396
MnlI	CCTC	4 cut(s)	122, 145, 196, 199
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	3 cut(s)	86, 98, 434
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	150, 318
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	2 cut(s)	62, 479
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	3 cut(s)	90, 224, 380
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	49, 103
NmuCI	GTSAC	2 cut(s)	40, 102
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	64, 67, 158, 165, 349, 472, 475
PleI	GAGTC	4 cut(s)	247, 326, 394, 442
PpsI	GAGTC	4 cut(s)	247, 326, 394, 442
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PstI	CTGCAG	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	3 cut(s)	86, 98, 434
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	7 cut(s)	63, 66, 157, 164, 348, 471, 474
Sau3AI	GATC	3 cut(s)	90, 224, 380
SchI	GAGTC	4 cut(s)	247, 326, 394, 442
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	5 cut(s)	168, 210, 246, 331, 409
SfaNI	GCATC	1 cut(s)	143
SfcI	CTRYAG	1 cut(s)	471
SmiMI	CAYNNNNRTG	3 cut(s)	86, 98, 434
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	4 cut(s)	26, 38, 75, 171
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	72, 195, 396
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	3 cut(s)	130, 200, 314
TseFI	GTSAC	2 cut(s)	40, 102
TseI	GCWGC	7 cut(s)	62, 65, 156, 163, 347, 470, 473
Tsp45I	GTSAC	2 cut(s)	40, 102
TspGWI	ACGGA	2 cut(s)	393, 435
TspRI	CASTG	3 cut(s)	130, 200, 314
XceI	RCATGY	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	4 cut(s)	26, 38, 75, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.