AT4G14815

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006489
Physical Location & Seq
Forward (+)
8505043 .. 8505952
910 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14815.1

Sequence Viewer

Length: 471 bp
ATGAAACCTAGAATGTGTTTAATCTTGTTTATTGCTTTAATGAGAGTAATGTCGATTGTTTCTGCTCAGTCGAGTTGCACAAATGTTCTAATCAGCATGGCGCCGTGTCTCAGCTTCATCACTCAAAACACTTCTCTCCCGTCTCAACAATGTTGTAACCAGTTGGCTCATGTTGTCCGGTATTCTTCTGAGTGTTTGTGTCAGGTTCTCGATGGTGGAGGTTCTCAGCTTGGGATCAATGTTAATGAGACACAAGCTCTTGCTTTGCCTAAAGCTTGTCATGTTGAAACTCCTCCTGCTAGTCGCTGCCATAGTGGTTCTTCGGTTAATTCACATTCAGAACATGGAAATGGATCAAAAACAGTCCCAAGAGAAAAGTCATCATCTGATGGTTCTATTAAGTTCTCATTCCCTCTTCTCGCCATCCTATTCACAGCTTCTTACATTACATTAATCTACGCAAAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

156

Amino Acids

16.77

Weight (kDa)

8.62

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 12 - 103 1.5e-16 Probable lipid transfer
Tryp_alpha_amyl PF00234 26 - 103 2.4e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AclWI GGATC 2 cut(s) 242, 361
AcyI GRCGYC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 287
AluBI AGCT 5 cut(s) 114, 229, 257, 275, 437
AluI AGCT 5 cut(s) 114, 229, 257, 275, 437
Alw26I GTCTC 3 cut(s) 113, 147, 242
AlwI GGATC 2 cut(s) 242, 361
ApeKI GCWGC 1 cut(s) 306
AseI ATTAAT 1 cut(s) 452
AspLEI GCGC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 293
BccI CCATC 3 cut(s) 206, 383, 431
BceAI ACGGC 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 113, 147, 242
BfaI CTAG 2 cut(s) 9, 300
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 423
BseMII CTCAG 4 cut(s) 80, 124, 180, 239
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 3 cut(s) 113, 147, 242
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 234, 353
BspCNI CTCAG 4 cut(s) 79, 123, 181, 238
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 2 cut(s) 242, 361
BspT107I GGYRCC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 160
BssMI GATC 2 cut(s) 234, 353
BssNI GRCGYC 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 101
BstDEI CTNAG 4 cut(s) 66, 110, 189, 225
BstF5I GGATG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 2 cut(s) 237, 356
BstMAI GTCTC 3 cut(s) 113, 147, 242
BstMBI GATC 2 cut(s) 234, 353
BstV1I GCAGC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 423
CfoI GCGC 1 cut(s) 103
CviAII CATG 4 cut(s) 97, 170, 281, 344
CviJI RGCY 6 cut(s) 114, 167, 229, 257, 275, 437
CviKI_1 RGCY 6 cut(s) 114, 167, 229, 257, 275, 437
DdeI CTNAG 4 cut(s) 66, 110, 189, 225
DinI GGCGCC 1 cut(s) 102
DpnI GATC 2 cut(s) 236, 355
DpnII GATC 2 cut(s) 234, 353
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 4 cut(s) 100, 173, 284, 347
FaiI YATR 5 cut(s) 98, 171, 282, 312, 345
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 96, 169, 280, 343
Fnu4HI GCNGC 1 cut(s) 307
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 2 cut(s) 9, 300
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 307
HaeII RGCGCY 1 cut(s) 104
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 100, 173, 284, 347
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 273
HpaII CCGG 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 190, 340, 388
Hpy188III TCNNGA 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 1 cut(s) 78
HpyF3I CTNAG 4 cut(s) 66, 110, 189, 225
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 100, 173, 284, 347
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 234, 353
LpnPI CCDG 4 cut(s) 173, 188, 191, 309
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 2 cut(s) 9, 300
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 236, 355
MboI GATC 2 cut(s) 234, 353
MboII GAAGA 3 cut(s) 177, 312, 407
MluCI AATT 1 cut(s) 328
Mly113I GGCGCC 1 cut(s) 101
MnlI CCTC 3 cut(s) 212, 303, 423
MseI TTAA 6 cut(s) 20, 38, 243, 327, 399, 452
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 1 cut(s) 178
NarI GGCGCC 1 cut(s) 101
NdeII GATC 2 cut(s) 234, 353
NlaIII CATG 4 cut(s) 100, 173, 284, 347
NlaIV GGNNCC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 308
PluTI GGCGCC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 102
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 6 cut(s) 20, 38, 243, 327, 399, 452
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 2 cut(s) 234, 353
SetI ASST 8 cut(s) 10, 116, 207, 223, 231, 259, 277, 439
SfoI GGCGCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 1 cut(s) 328
SspDI GGCGCC 1 cut(s) 100
SspMI CTAG 2 cut(s) 9, 300
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 3 cut(s) 53, 71, 210
TasI AATT 1 cut(s) 328
Tru1I TTAA 6 cut(s) 20, 38, 243, 327, 399, 452
Tru9I TTAA 6 cut(s) 20, 38, 243, 327, 399, 452
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 17, 106
VspI ATTAAT 1 cut(s) 452
XspI CTAG 2 cut(s) 9, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.