Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

8295617 .. 8296604

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGATCCATTTTTAATTCAGTCCCCATTCTCCGGCTTCTCACCGGAATATTCTATCGGATCTTCTCCAGATTCTTTCTCATCCTCTTCTTCTAACAATTACTCTCTTCCCTTCAACGAGAACGACTCAGAGGAAATGTTTCTCTACGGTCTAATCGAGCAGTCCACGCAACAAACCTATATTGACTCGGATAGTCAAGACCTTCCGATCAAATCCGTAAGCTCAAGAAAGTCAGAGAAGTCTTACAGAGGCGTAAGACGACGGCCATGGGGGAAATTCGCGGCGGAGATAAGAGATTCGACTAGAAACGGTATTAGGGTTTGGCTCGGGACGTTCGAAAGCGCGGAAGAGGCGGCTTTAGCCTACGATCAAGCTGCTTTCTCGATGAGAGGGTCCTCGGCGATTCTCAATTTTTCGGCGGAGAGAGTTCAAGAGTCGCTTTCGGAGATTAAATATACCTACGAGGATGGTTGTTCTCCGGTTGTGGCGTTGAAGAGGAAACACTCGATGAGACGGAGAATGACCAATAAGAAGACGAAAGATAGTGACTTTGATCACCGCTCCGTGAAGTTAGATAATGTAGTTGTCTTTGAGGATTTGGGAGAACAGTACCTTGAGGAGCTTTTGGGGTCTTCTGAAAATAGTGGGACTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

218

Amino Acids

24.69

Weight (kDa)

5.04

Isoelectric Point (pI)

70.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	81 - 132	5.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	561
AccII	CGCG	2 cut(s)	281, 344
AciI	CCGC	6 cut(s)	281, 284, 344, 353, 419, 559
AclWI	GGATC	2 cut(s)	12, 67
AcoI	YGGCCR	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	115, 431, 493
AluBI	AGCT	3 cut(s)	222, 374, 622
AluI	AGCT	3 cut(s)	222, 374, 622
Alw26I	GTCTC	1 cut(s)	505
AlwI	GGATC	2 cut(s)	12, 67
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	33, 548
AsuII	TTCGAA	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	539, 624
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	278
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	282, 354, 375
BlsI	GCNGC	3 cut(s)	283, 355, 376
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	6, 394
BpiI	GAAGAC	2 cut(s)	539, 624
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	208, 635
BsaJI	CCNNGG	2 cut(s)	266, 396
BsaWI	WCCGGW	2 cut(s)	43, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	266, 396
BseGI	GGATG	2 cut(s)	80, 472
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	2 cut(s)	281, 344
BshFI	GGCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	3 cut(s)	33, 44, 479
BslFI	GGGAC	2 cut(s)	7, 343
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	505
BsmBI	CGTCTC	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	7, 343
BsnI	GGCC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	4, 59, 207, 367, 553
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	6 cut(s)	281, 284, 344, 353, 419, 559
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	281, 344
BspLI	GGNNCC	2 cut(s)	6, 394
BspPI	GGATC	2 cut(s)	12, 67
BspT104I	TTCGAA	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	266, 396
BssMI	GATC	5 cut(s)	4, 59, 207, 367, 553
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	149, 311, 609
Bst6I	CTCTTC	4 cut(s)	91, 111, 342, 488
BstBI	TTCGAA	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	80, 472
BstFNI	CGCG	2 cut(s)	281, 344
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	5 cut(s)	7, 62, 210, 370, 556
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	5 cut(s)	4, 59, 207, 367, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 350, 359
BstUI	CGCG	2 cut(s)	281, 344
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	2 cut(s)	539, 624
BstX2I	RGATCY	2 cut(s)	4, 59
BstYI	RGATCY	2 cut(s)	4, 59
BsuRI	GGCC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	80, 472
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	610
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	8 cut(s)	36, 222, 265, 325, 356, 362, 374, 622
CviKI_1	RGCY	8 cut(s)	36, 222, 265, 325, 356, 362, 374, 622
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	5 cut(s)	6, 61, 209, 369, 555
DpnII	GATC	5 cut(s)	4, 59, 207, 367, 553
EaeI	YGGCCR	1 cut(s)	263
Eam1104I	CTCTTC	4 cut(s)	91, 111, 342, 488
EarI	CTCTTC	4 cut(s)	91, 111, 342, 488
EciI	GGCGGA	2 cut(s)	299, 434
Eco130I	CCWWGG	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	505
FaeI	CATG	1 cut(s)	270
FaiI	YATR	3 cut(s)	180, 268, 456
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	2 cut(s)	7, 343
FatI	CATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	282, 354, 375
FokI	GGATG	2 cut(s)	67, 479
Fsp4HI	GCNGC	3 cut(s)	282, 354, 375
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	3 cut(s)	282, 354, 375
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	3 cut(s)	33, 44, 479
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	6 cut(s)	71, 125, 185, 296, 403, 434
HpaII	CCGG	3 cut(s)	33, 44, 479
HphI	GGTGA	2 cut(s)	33, 548
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	7 cut(s)	59, 130, 190, 207, 235, 445, 637
Hpy188III	TCNNGA	6 cut(s)	68, 197, 225, 328, 382, 431
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	2 cut(s)	121, 212
HpyCH4III	ACNGT	3 cut(s)	149, 311, 609
HpyCH4IV	ACGT	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 350, 359
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	4, 59, 207, 367, 553
LmnI	GCTCC	2 cut(s)	566, 619
LpnPI	CCDG	4 cut(s)	46, 57, 81, 492
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	5 cut(s)	6, 61, 209, 369, 555
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	5 cut(s)	4, 59, 207, 367, 553
MboII	GAAGA	8 cut(s)	54, 78, 81, 98, 359, 505, 544, 624
MflI	RGATCY	2 cut(s)	4, 59
MluCI	AATT	4 cut(s)	15, 97, 275, 409
MlyI	GAGTC	3 cut(s)	119, 179, 443
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	2 cut(s)	14, 450
MspI	CCGG	3 cut(s)	33, 44, 479
MvnI	CGCG	2 cut(s)	281, 344
MwoI	GCNNNNNNNGC	3 cut(s)	166, 350, 359
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	5 cut(s)	4, 59, 207, 367, 553
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	2 cut(s)	6, 394
NmeAIII	GCCGAG	1 cut(s)	377
NmuCI	GTSAC	1 cut(s)	545
NspV	TTCGAA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 333
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	71, 296, 403
PkrI	GCNGC	3 cut(s)	283, 355, 376
PleI	GAGTC	3 cut(s)	119, 179, 442
PpsI	GAGTC	3 cut(s)	119, 179, 442
PpuMI	RGGWCCY	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	6, 394
PspPI	GGNCC	1 cut(s)	393
PspPPI	RGGWCCY	1 cut(s)	393
PsuI	RGATCY	2 cut(s)	4, 59
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SaqAI	TTAA	2 cut(s)	14, 450
SatI	GCNGC	3 cut(s)	282, 354, 375
Sau3AI	GATC	5 cut(s)	4, 59, 207, 367, 553
Sau96I	GGNCC	1 cut(s)	393
SchI	GAGTC	3 cut(s)	119, 179, 443
SetI	ASST	8 cut(s)	179, 204, 224, 335, 376, 461, 615, 624
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	223, 614
SmoI	CTYRAG	2 cut(s)	223, 614
Sse9I	AATT	4 cut(s)	15, 97, 275, 409
SsiI	CCGC	6 cut(s)	281, 284, 344, 353, 419, 559
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	149, 311, 609
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	5 cut(s)	156, 299, 336, 383, 506
TasI	AATT	4 cut(s)	15, 97, 275, 409
TauI	GCSGC	2 cut(s)	284, 356
TfiI	GAWTC	3 cut(s)	71, 296, 403
Tru1I	TTAA	2 cut(s)	14, 450
Tru9I	TTAA	2 cut(s)	14, 450
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	545
TspGWI	ACGGA	3 cut(s)	205, 529, 553
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.