Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

6560032 .. 6569391

Gene Structure 9360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG040400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGCTATTGGGACAACCACTCGATCACAAACACATTCCAAACAGATAACTCAAACATCTCCGATTTCCAAATGAATTACTCCATCTTCCACTCCCCAAATTCTGATACATCCTCTGAGTTTTCTTGGGATGCTCTAGAATTTGGCAATACTTCTCTTCCTTTCAATGAAAACGACTCCGAGGAAATGCTTCTCTTTGGGATGCTATCCAAGGCCACCCAAGAAACTACCTCATTTGAAACAGAAACACACAACTCAGCTGCCTCATCCAACCCCATAAAGGAAGAAGAAGTGAGTTCCGATTCCACATCCGAAGAAGAAAACCCGAAAACCCCGAAGAAGGAGAAGTCCTACAGAGGCGTCAGAAGGCGGCCGTGGGGCAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGAGTTTGGCTAGGCACATTTGACAGTGCTGAAGCCGCCGCTTTGGCCTATGATCAAGCCGCCTTTGCCATGCGGGGCTCCGCCGCCGTTCTCAACTTTCCGGTGGAGAGAGTCCGGGAGTCTCTTCGTGATATGAACTGTGCTACTTCGGATTTGGACGGGGGGTGTTCGCCGGTGGTGGCGCTGAAACGAAAGCACTCGATGAGAAGGAAATTGGGGAACAAGAAGAGTAGAATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTTTGAGTTCATCTGAAAGCACTAGTACTACTACTACTACTGCTGCTGCTAATTGCGTGTCAGCGACCACGTCGTCGCTGAGAACAAGTGTGTTAACGCTGCTAACCGAACTTTTTTGGCAGGCCTTCCTCGATGGACGACGTCTGTCCTCCTCTCTGGTGCACTGCTACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

300

Amino Acids

33.49

Weight (kDa)

5.2

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	117 - 168	7.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	799
AatII	GACGTC	1 cut(s)	871
AciI	CCGC	8 cut(s)	370, 390, 459, 462, 483, 496, 504, 507
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	3 cut(s)	100, 140, 383
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	360, 868
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	2 cut(s)	280, 340
AgsI	TTSAA	2 cut(s)	166, 239
AhlI	ACTAGT	1 cut(s)	749
AjiI	CACGTC	1 cut(s)	798
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	2 cut(s)	396, 549
Alw44I	GTGCAC	1 cut(s)	887
AoxI	GGCC	4 cut(s)	213, 371, 468, 849
ApaLI	GTGCAC	1 cut(s)	887
ApeKI	GCWGC	4 cut(s)	260, 770, 773, 826
ApoI	RAATTY	3 cut(s)	100, 140, 383
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	539
AsuII	TTCGAA	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	891
BanII	GRGCYC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	4 cut(s)	247, 757, 760, 813
BccI	CCATC	2 cut(s)	92, 854
BceAI	ACGGC	2 cut(s)	358, 494
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	396, 549
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	3 cut(s)	137, 434, 750
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	608
BglI	GCCNNNNNGGC	1 cut(s)	467
BmcAI	AGTACT	1 cut(s)	754
Bme1390I	CCNGG	1 cut(s)	539
BmgBI	CACGTC	1 cut(s)	798
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	2 cut(s)	121, 192
BoxI	GACNNNNGTC	1 cut(s)	871
Bpu14I	TTCGAA	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	539
BsaHI	GRCGYC	2 cut(s)	360, 868
BsaJI	CCNNGG	3 cut(s)	180, 210, 374
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 340
Bse118I	RCCGGY	1 cut(s)	595
BseDI	CCNNGG	3 cut(s)	180, 210, 374
BseGI	GGATG	5 cut(s)	110, 136, 207, 266, 308
BseLI	CCNNNNNNNGG	2 cut(s)	280, 340
BseMII	CTCAG	3 cut(s)	108, 270, 797
BseRI	GAGGAG	1 cut(s)	868
BseSI	GKGCMC	1 cut(s)	891
BseX3I	CGGCCG	1 cut(s)	371
BseXI	GCAGC	4 cut(s)	247, 757, 760, 813
Bsh1285I	CGRYCG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	215, 373, 470, 851
BsiEI	CGRYCG	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	3 cut(s)	524, 538, 596
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	280, 340
BsmAI	GTCTC	2 cut(s)	396, 549
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	215, 373, 470, 851
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	2 cut(s)	503, 891
Bsp143I	GATC	2 cut(s)	24, 475
BspACI	CCGC	8 cut(s)	370, 390, 459, 462, 483, 496, 504, 507
BspANI	GGCC	4 cut(s)	215, 373, 470, 851
BspCNI	CTCAG	3 cut(s)	109, 269, 798
BspLI	GGNNCC	1 cut(s)	502
BspT104I	TTCGAA	1 cut(s)	696
BsrFI	RCCGGY	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	3 cut(s)	180, 210, 374
BssMI	GATC	2 cut(s)	24, 475
BssNI	GRCGYC	2 cut(s)	360, 868
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	449, 563
Bst6I	CTCTTC	3 cut(s)	162, 552, 644
BstACI	GRCGYC	2 cut(s)	360, 868
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	849
BstDEI	CTNAG	3 cut(s)	117, 256, 806
BstDSI	CCRYGG	1 cut(s)	374
BstF5I	GGATG	5 cut(s)	110, 136, 207, 266, 308
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	2 cut(s)	27, 478
BstMAI	GTCTC	2 cut(s)	396, 549
BstMBI	GATC	2 cut(s)	24, 475
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 467, 488
BstPAI	GACNNNNGTC	1 cut(s)	871
BstSCI	CCNGG	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	891
BstV1I	GCAGC	4 cut(s)	247, 757, 760, 813
BstZI	CGGCCG	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	215, 373, 470, 851
BtgI	CCRYGG	1 cut(s)	374
BtrI	CACGTC	1 cut(s)	798
BtsCI	GGATG	5 cut(s)	110, 136, 207, 266, 308
BtsI	GCAGTG	1 cut(s)	889
BtsIMutI	CAGTG	2 cut(s)	454, 889
Cac8I	GCNNGC	1 cut(s)	849
CfoI	GCGC	1 cut(s)	607
Cfr10I	RCCGGY	1 cut(s)	595
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	753
CviAII	CATG	2 cut(s)	416, 493
CviQI	GTAC	1 cut(s)	753
DdeI	CTNAG	3 cut(s)	117, 256, 806
DpnI	GATC	2 cut(s)	26, 477
DpnII	GATC	2 cut(s)	24, 475
DrdI	GACNNNNNNGTC	1 cut(s)	799
DseDI	GACNNNNNNGTC	1 cut(s)	799
EaeI	YGGCCR	1 cut(s)	371
EagI	CGGCCG	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	162, 552, 644
EarI	CTCTTC	3 cut(s)	162, 552, 644
EciI	GGCGGA	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	503
Eco52I	CGGCCG	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	419, 496
FaiI	YATR	5 cut(s)	278, 417, 474, 494, 557
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	415, 492
FauI	CCCGC	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	475
FokI	GGATG	5 cut(s)	97, 143, 214, 253, 295
FriOI	GRGCYC	1 cut(s)	503
FspBI	CTAG	3 cut(s)	137, 434, 750
GlaI	GCGC	1 cut(s)	606
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	4 cut(s)	215, 373, 470, 851
HapII	CCGG	3 cut(s)	524, 538, 596
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	607
Hin1I	GRCGYC	2 cut(s)	360, 868
Hin1II	CATG	2 cut(s)	419, 496
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	5 cut(s)	176, 302, 404, 534, 542
HpaI	GTTAAC	1 cut(s)	822
HpaII	CCGG	3 cut(s)	524, 538, 596
Hpy166II	GTNNAC	2 cut(s)	822, 889
Hpy188I	TCNGA	9 cut(s)	64, 106, 118, 181, 301, 313, 365, 574, 742
Hpy188III	TCNNGA	2 cut(s)	137, 551
Hpy8I	GTNNAC	2 cut(s)	822, 889
Hpy99I	CGWCG	3 cut(s)	802, 805, 870
HpyAV	CCTTC	4 cut(s)	334, 360, 624, 862
HpyCH4III	ACNGT	2 cut(s)	449, 563
HpyCH4IV	ACGT	2 cut(s)	797, 868
HpyCH4V	TGCA	1 cut(s)	889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 467, 488
HpyF3I	CTNAG	3 cut(s)	117, 256, 806
HpySE526I	ACGT	2 cut(s)	797, 868
Hsp92I	GRCGYC	2 cut(s)	360, 868
Hsp92II	CATG	2 cut(s)	419, 496
HspAI	GCGC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	475
KspAI	GTTAAC	1 cut(s)	822
Kzo9I	GATC	2 cut(s)	24, 475
LmnI	GCTCC	2 cut(s)	506, 707
LpnPI	CCDG	6 cut(s)	424, 537, 551, 609, 833, 869
Lsp1109I	GCAGC	4 cut(s)	247, 757, 760, 813
LweI	GCATC	2 cut(s)	121, 192
MaeI	CTAG	3 cut(s)	137, 434, 750
MaeII	ACGT	2 cut(s)	797, 868
MalI	GATC	2 cut(s)	26, 477
MboI	GATC	2 cut(s)	24, 475
MhlI	GDGCHC	2 cut(s)	503, 891
MluCI	AATT	6 cut(s)	76, 100, 140, 383, 635, 778
MlyI	GAGTC	4 cut(s)	170, 398, 543, 551
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	124, 175, 241, 274, 350, 666, 866, 886, 889
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	3 cut(s)	524, 538, 596
MspR9I	CCNGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	458, 467, 488
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	2 cut(s)	24, 475
NlaIII	CATG	2 cut(s)	419, 496
NlaIV	GGNNCC	1 cut(s)	502
NmeAIII	GCCGAG	1 cut(s)	418
NspV	TTCGAA	1 cut(s)	696
PceI	AGGCCT	1 cut(s)	851
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	302
PflFI	GACNNNGTC	2 cut(s)	796, 867
PfoI	TCCNGGA	1 cut(s)	537
PleI	GAGTC	4 cut(s)	170, 398, 542, 550
PpsI	GAGTC	4 cut(s)	170, 398, 542, 550
PshAI	GACNNNNGTC	1 cut(s)	871
PspN4I	GGNNCC	1 cut(s)	502
PsyI	GACNNNGTC	2 cut(s)	796, 867
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	821
Sau3AI	GATC	2 cut(s)	24, 475
ScaI	AGTACT	1 cut(s)	754
SchI	GAGTC	4 cut(s)	170, 398, 543, 551
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	503, 891
SetI	ASST	5 cut(s)	233, 262, 677, 800, 871
SfaNI	GCATC	2 cut(s)	121, 192
SfcI	CTRYAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	696
SgrAI	CRCCGGYG	1 cut(s)	595
SpeI	ACTAGT	1 cut(s)	749
Sse9I	AATT	6 cut(s)	76, 100, 140, 383, 635, 778
SseBI	AGGCCT	1 cut(s)	851
SsiI	CCGC	8 cut(s)	370, 390, 459, 462, 483, 496, 504, 507
SspMI	CTAG	3 cut(s)	137, 434, 750
StuI	AGGCCT	1 cut(s)	851
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	449, 563
TaiI	ACGT	2 cut(s)	800, 871
TaqI	TCGA	5 cut(s)	23, 407, 623, 696, 858
TasI	AATT	6 cut(s)	76, 100, 140, 383, 635, 778
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	6 cut(s)	373, 392, 461, 464, 485, 509
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TscAI	CASTG	2 cut(s)	454, 896
TseI	GCWGC	4 cut(s)	260, 770, 773, 826
TspDTI	ATGAA	4 cut(s)	89, 183, 572, 726
TspRI	CASTG	2 cut(s)	454, 896
Tth111I	GACNNNGTC	2 cut(s)	796, 867
VneI	GTGCAC	1 cut(s)	887
XapI	RAATTY	3 cut(s)	100, 140, 383
XbaI	TCTAGA	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	137, 434, 750
ZraI	GACGTC	1 cut(s)	869
ZrmI	AGTACT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.