Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

14558211 .. 14558960

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCACATACACACACAGAGAGTGATCCAAGCAGGAAACAAAGACACCCCAACTCTTCAAATGAATTACTCGATTTTTGATCCCCCAAACTCCAATTTGTCACCAGAATCTTCATTTGGATCATCATTTTCTTGGGATGATGGTCTTAAATTTGGCAACAATTCATTACCTTTCAATGAAAATGATTCAGAAGAAATGCTTCTCTATGGTCTAATTTCGGAGGCCACTCAAGAAATAACGTCAAGTGTTTCTGTTTCTGCAAACCCAATTAAGGAAGAGGAGGTGAGCTCCGCATTCGAAGAAGAAAACCTGAAAGAGGAAAAGTCCTATAGAGGGGTTCGGAGGCGGCCGTGGGGCAAGTTTGCTGCAGAAATAAGAGACTCCACTAGAAATGGCATAAGGGTGTGGCTAGGCACATTTGACAGTGCCGAAGCTGCAGCTCTTGCCTATGATCAAGCTGCCTTTTCCATGAGAGGCTCTACGGCAATTCTCAACTTCCCAGTAGAGAGAGTCCGCGAATCGCTTAGGGAGATCAATTATGGTACCTCGGATTTGGGAGGGTGTTCGCCGGTGATGGCGCTTAAGCGAAAGCACTCGATGAGAAGGAAAACTGCGTTCAAGAAAAGTAAAGTTGACAGAGATGTGAGGATAGAGAATGTGGTGGTGTTTGAAGATCTGGGAGTAGATTACTTGGAAGAATTGTTAAATTCAACCGAGAATACAAGTACCAGTGCCACTCCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

250

Amino Acids

27.95

Weight (kDa)

5.11

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	109 - 160	7.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	1 cut(s)	516
AciI	CCGC	3 cut(s)	291, 346, 514
AclWI	GGATC	3 cut(s)	19, 74, 127
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	149, 706
AfaI	GTAC	2 cut(s)	544, 727
AfiI	CCNNNNNNNGG	3 cut(s)	271, 316, 333
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	5 cut(s)	59, 175, 619, 671, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	288, 434, 440, 458
AluI	AGCT	4 cut(s)	288, 434, 440, 458
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	3 cut(s)	19, 74, 127
AoxI	GGCC	2 cut(s)	222, 347
ApeKI	GCWGC	4 cut(s)	365, 434, 437, 458
ApoI	RAATTY	2 cut(s)	149, 706
Asp700I	GAANNNNTTC	1 cut(s)	198
Asp718I	GGTACC	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	580
AsuHPI	GGTGA	3 cut(s)	93, 295, 583
AsuII	TTCGAA	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	352, 421, 445, 449
BccI	CCATC	2 cut(s)	134, 568
BceAI	ACGGC	2 cut(s)	334, 498
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	2 cut(s)	387, 410
BfmI	CTRYAG	3 cut(s)	328, 366, 435
BfoI	RGCGCY	1 cut(s)	581
BfrI	CTTAAG	1 cut(s)	581
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	5 cut(s)	347, 366, 435, 438, 459
BlsI	GCNGC	5 cut(s)	348, 367, 436, 439, 460
BmiI	GGNNCC	1 cut(s)	544
BmrI	ACTGGG	1 cut(s)	494
BmuI	ACTGGG	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	350, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 316, 333
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	500, 729
BseDI	CCNNGG	2 cut(s)	350, 546
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	271, 316, 333
BseNI	ACTGG	2 cut(s)	500, 729
BseRI	GAGGAG	1 cut(s)	293
BseX3I	CGGCCG	1 cut(s)	347
BseXI	GCAGC	4 cut(s)	352, 421, 445, 449
Bsh1236I	CGCG	1 cut(s)	516
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	224, 349
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	271, 316, 333
BsmAI	GTCTC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	224, 349
Bsp119I	TTCGAA	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
BspACI	CCGC	3 cut(s)	291, 346, 514
BspANI	GGCC	2 cut(s)	224, 349
BspFNI	CGCG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	544
BspMAI	CTGCAG	2 cut(s)	370, 439
BspPI	GGATC	3 cut(s)	19, 74, 127
BspT104I	TTCGAA	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	542
BspTI	CTTAAG	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	500, 729
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	350, 546
BssMI	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	2 cut(s)	60, 270
BstAFI	CTTAAG	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	524
BstDSI	CCRYGG	1 cut(s)	350
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	6 cut(s)	27, 82, 122, 454, 534, 676
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 443
BstSFI	CTRYAG	3 cut(s)	328, 366, 435
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	352, 421, 445, 449
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BstZI	CGGCCG	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	224, 349
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	430, 736
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	543, 726
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	8 cut(s)	224, 288, 349, 409, 434, 440, 458, 477
CviKI_1	RGCY	8 cut(s)	224, 288, 349, 409, 434, 440, 458, 477
CviQI	GTAC	2 cut(s)	543, 726
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	6 cut(s)	26, 81, 121, 453, 533, 675
DpnII	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
EaeI	YGGCCR	1 cut(s)	347
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	60, 270
EarI	CTCTTC	2 cut(s)	60, 270
Ecl136II	GAGCTC	1 cut(s)	288
EclXI	CGGCCG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	290
Eco52I	CGGCCG	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	1 cut(s)	472
FaiI	YATR	7 cut(s)	8, 207, 330, 398, 450, 470, 540
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	1 cut(s)	468
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	5 cut(s)	347, 366, 435, 438, 459
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	5 cut(s)	347, 366, 435, 438, 459
FspBI	CTAG	2 cut(s)	387, 410
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	5 cut(s)	347, 366, 435, 438, 459
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	224, 349
HapII	CCGG	1 cut(s)	569
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	5 cut(s)	107, 185, 380, 510, 518
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	3 cut(s)	93, 295, 583
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	4 cut(s)	190, 220, 342, 550
Hpy188III	TCNNGA	2 cut(s)	230, 619
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	1 cut(s)	597
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	4 cut(s)	4, 260, 368, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 443
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	1 cut(s)	578
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	7 cut(s)	18, 117, 323, 513, 582, 662, 742
Lsp1109I	GCAGC	4 cut(s)	352, 421, 445, 449
MaeI	CTAG	2 cut(s)	387, 410
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	6 cut(s)	26, 81, 121, 453, 533, 675
MboI	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
MboII	GAAGA	8 cut(s)	47, 102, 203, 287, 311, 314, 683, 707
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	374, 519
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	4 cut(s)	147, 270, 582, 704
MslI	CAYNNNNRTG	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	1 cut(s)	569
Mva1269I	GAATGC	1 cut(s)	293
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	2 cut(s)	434, 443
NdeII	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	1 cut(s)	544
NmuCI	GTSAC	1 cut(s)	99
NspV	TTCGAA	1 cut(s)	297
PctI	GAATGC	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	107, 185, 518
PkrI	GCNGC	5 cut(s)	348, 367, 436, 439, 460
PleI	GAGTC	2 cut(s)	374, 518
PpsI	GAGTC	2 cut(s)	374, 518
Psp124BI	GAGCTC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	544
PstI	CTGCAG	2 cut(s)	370, 439
PsuI	RGATCY	1 cut(s)	673
RsaI	GTAC	2 cut(s)	544, 727
RsaNI	GTAC	2 cut(s)	543, 726
RseI	CAYNNNNRTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	147, 270, 582, 704
SatI	GCNGC	5 cut(s)	347, 366, 435, 438, 459
Sau3AI	GATC	6 cut(s)	24, 79, 119, 451, 531, 673
SchI	GAGTC	2 cut(s)	374, 519
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	9 cut(s)	172, 242, 285, 290, 312, 436, 442, 460, 548
SfcI	CTRYAG	3 cut(s)	328, 366, 435
SfuI	TTCGAA	1 cut(s)	297
SgrAI	CRCCGGYG	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	2 cut(s)	228, 581
SmoI	CTYRAG	2 cut(s)	228, 581
SsiI	CCGC	3 cut(s)	291, 346, 514
SspMI	CTAG	2 cut(s)	387, 410
SstI	GAGCTC	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	71, 297, 596
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	3 cut(s)	107, 185, 518
Tru1I	TTAA	4 cut(s)	147, 270, 582, 704
Tru9I	TTAA	4 cut(s)	147, 270, 582, 704
TscAI	CASTG	2 cut(s)	430, 736
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	4 cut(s)	365, 434, 437, 458
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	4 cut(s)	77, 102, 153, 192
TspRI	CASTG	2 cut(s)	430, 736
Vha464I	CTTAAG	1 cut(s)	581
XagI	CCTNNNNNAGG	1 cut(s)	314
XapI	RAATTY	2 cut(s)	149, 706
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	2 cut(s)	387, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.