Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021954.1

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Reverse (-)

5555 .. 6346

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021954.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgggctattgggacaacaaccacattatgagtagccactcgatcacaaacacattccaaacagaaaactcaaacatctccgatttccaaatgaattactccatcttccactccccaaattctgatacatcctctgagttttcttgggatgctctagaatttggcaatacttctcttcctttcaatgaaaacgactccgaggaaatgcttctctttgggatgctatccaaggccacccaagaaactacctcatttgaaacacacaactcagctgcctcatccaaccccataaaggaagaagaagtgagttccgattccacatccgaagaagaaaaccccaaaaccccgaagaaggagaagtcctacagaggcgtcagaaggcggccgtggggcaaattcgccgccgagataagagactcgaccagacatggcgtaagagtttggctaggaacatttgacagtgctgaagccgccgctttggcctacgatcaagccgcctttgccatgcggggctccgccgccgttctcaactttccggtggagagagtccgggagtctcttcgtgatatgaactgtgctacttcggatttggacggggggtgttcgccggtggtggcgctgaaacgaaagcactcgatgagaaggaaattggggaacaagaagagtagaatggagagagatgtgaggttagagaatgtggtggtgttcgaagatttaggagcagattacttggaacaacttttgagttcatctgaaagcactagtactactactgctgctgctaattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

263

Amino Acids

29.47

Weight (kDa)

5.18

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	382, 402, 471, 474, 495, 508, 516, 519
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	118, 158, 395
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	372
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	2 cut(s)	292, 352
AgsI	TTSAA	2 cut(s)	184, 257
AhlI	ACTAGT	1 cut(s)	761
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	408, 561
AoxI	GGCC	3 cut(s)	231, 383, 480
ApeKI	GCWGC	3 cut(s)	272, 776, 779
ApoI	RAATTY	3 cut(s)	118, 158, 395
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	551
AsuII	TTCGAA	1 cut(s)	708
BanII	GRGCYC	1 cut(s)	515
BbvI	GCAGC	3 cut(s)	259, 763, 766
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	370, 506
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	408, 561
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	3 cut(s)	155, 446, 762
BfmI	CTRYAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	620
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	9 cut(s)	273, 383, 402, 471, 474, 495, 519, 777, 780
BlsI	GCNGC	9 cut(s)	274, 384, 403, 472, 475, 496, 520, 778, 781
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	139, 210
Bpu14I	TTCGAA	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	198, 228, 386
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 352
Bse118I	RCCGGY	1 cut(s)	607
BseDI	CCNNGG	3 cut(s)	198, 228, 386
BseGI	GGATG	5 cut(s)	128, 154, 225, 278, 320
BseLI	CCNNNNNNNGG	2 cut(s)	292, 352
BseMII	CTCAG	2 cut(s)	126, 282
BseX3I	CGGCCG	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	259, 763, 766
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	3 cut(s)	233, 385, 482
BsiEI	CGRYCG	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	536, 550, 608
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	292, 352
BsmAI	GTCTC	2 cut(s)	408, 561
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	233, 385, 482
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	2 cut(s)	42, 487
BspACI	CCGC	8 cut(s)	382, 402, 471, 474, 495, 508, 516, 519
BspANI	GGCC	3 cut(s)	233, 385, 482
BspCNI	CTCAG	2 cut(s)	127, 281
BspLI	GGNNCC	1 cut(s)	514
BspT104I	TTCGAA	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	3 cut(s)	198, 228, 386
BssMI	GATC	2 cut(s)	42, 487
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	461, 575
Bst6I	CTCTTC	3 cut(s)	180, 564, 656
BstACI	GRCGYC	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	708
BstDEI	CTNAG	2 cut(s)	135, 268
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	5 cut(s)	128, 154, 225, 278, 320
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	2 cut(s)	45, 490
BstMAI	GTCTC	2 cut(s)	408, 561
BstMBI	GATC	2 cut(s)	42, 487
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 479, 500
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	259, 763, 766
BstZI	CGGCCG	1 cut(s)	383
BsuRI	GGCC	3 cut(s)	233, 385, 482
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	5 cut(s)	128, 154, 225, 278, 320
BtsIMutI	CAGTG	1 cut(s)	466
CfoI	GCGC	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	607
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	2 cut(s)	428, 505
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	2 cut(s)	135, 268
DpnI	GATC	2 cut(s)	44, 489
DpnII	GATC	2 cut(s)	42, 487
EaeI	YGGCCR	1 cut(s)	383
EagI	CGGCCG	1 cut(s)	383
Eam1104I	CTCTTC	3 cut(s)	180, 564, 656
EarI	CTCTTC	3 cut(s)	180, 564, 656
EciI	GGCGGA	1 cut(s)	505
EclXI	CGGCCG	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	515
Eco52I	CGGCCG	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	431, 508
FaiI	YATR	5 cut(s)	29, 290, 429, 506, 569
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	427, 504
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	9 cut(s)	273, 383, 402, 471, 474, 495, 519, 777, 780
FokI	GGATG	5 cut(s)	115, 161, 232, 265, 307
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	9 cut(s)	273, 383, 402, 471, 474, 495, 519, 777, 780
FspBI	CTAG	3 cut(s)	155, 446, 762
GlaI	GCGC	1 cut(s)	618
GluI	GCNGC	9 cut(s)	273, 383, 402, 471, 474, 495, 519, 777, 780
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	233, 385, 482
HapII	CCGG	3 cut(s)	536, 550, 608
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	619
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	431, 508
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HinfI	GANTC	5 cut(s)	194, 314, 416, 546, 554
HpaII	CCGG	3 cut(s)	536, 550, 608
Hpy188I	TCNGA	9 cut(s)	82, 124, 136, 199, 313, 325, 377, 586, 754
Hpy188III	TCNNGA	2 cut(s)	155, 563
HpyAV	CCTTC	3 cut(s)	346, 372, 636
HpyCH4III	ACNGT	2 cut(s)	461, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 479, 500
HpyF3I	CTNAG	2 cut(s)	135, 268
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	431, 508
HspAI	GCGC	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	42, 487
LmnI	GCTCC	2 cut(s)	518, 719
LpnPI	CCDG	4 cut(s)	436, 549, 563, 621
Lsp1109I	GCAGC	3 cut(s)	259, 763, 766
LweI	GCATC	2 cut(s)	139, 210
MaeI	CTAG	3 cut(s)	155, 446, 762
MalI	GATC	2 cut(s)	44, 489
MboI	GATC	2 cut(s)	42, 487
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	6 cut(s)	94, 118, 158, 395, 647, 784
MlyI	GAGTC	4 cut(s)	188, 410, 555, 563
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	6 cut(s)	142, 193, 259, 286, 362, 678
MroXI	GAANNNNTTC	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	3 cut(s)	536, 550, 608
MspR9I	CCNGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	3 cut(s)	470, 479, 500
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	2 cut(s)	42, 487
NlaIII	CATG	2 cut(s)	431, 508
NlaIV	GGNNCC	1 cut(s)	514
NmeAIII	GCCGAG	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	9 cut(s)	274, 384, 403, 472, 475, 496, 520, 778, 781
PleI	GAGTC	4 cut(s)	188, 410, 554, 562
PpsI	GAGTC	4 cut(s)	188, 410, 554, 562
PspN4I	GGNNCC	1 cut(s)	514
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SatI	GCNGC	9 cut(s)	273, 383, 402, 471, 474, 495, 519, 777, 780
Sau3AI	GATC	2 cut(s)	42, 487
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	4 cut(s)	188, 410, 555, 563
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	3 cut(s)	251, 274, 689
SfaNI	GCATC	2 cut(s)	139, 210
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	708
SgrAI	CRCCGGYG	1 cut(s)	607
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	6 cut(s)	94, 118, 158, 395, 647, 784
SsiI	CCGC	8 cut(s)	382, 402, 471, 474, 495, 508, 516, 519
SspMI	CTAG	3 cut(s)	155, 446, 762
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	461, 575
TaqI	TCGA	4 cut(s)	41, 419, 635, 708
TasI	AATT	6 cut(s)	94, 118, 158, 395, 647, 784
TatI	WGTACW	1 cut(s)	764
TauI	GCSGC	6 cut(s)	385, 404, 473, 476, 497, 521
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	3 cut(s)	272, 776, 779
TspDTI	ATGAA	4 cut(s)	107, 201, 584, 738
TspRI	CASTG	1 cut(s)	466
XapI	RAATTY	3 cut(s)	118, 158, 395
XbaI	TCTAGA	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	3 cut(s)	155, 446, 762
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.