Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

5912391 .. 5913158

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAATTACTCCATCTTCCACTCCCCAAATTCTGATACATCCTCTGAGTTTTCTTGGGATGCTCTAGAATTTGGCAATACTTCTCTTCCTTTCAATGAAAACGACTCCGAGGAAATGCTTCTCTTTGGGATGCTATCCAAGGCCACCCAAGAAACTACCTCATTTGAAACAGAAACACACAACTCAGCTGCCTCATCCAACCCCATAAAGGAAGAAGAAGTGAGTTCCGATTCCACATCCGAAGAAGAAAACCCGAAAACCCCGAAGAAGGAGAAGTCCTACAGAGGCGTCAGAAGGCGGCCGTGGGGCAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGAGTTTGGCTAGGCACATTTGACAGTGCTGAAGCCGCCGCTTTGGCTTATGATCAAGCCGCCTTTGCCATGCGGGGCTCCGCCGCCGTTCTCAACTTTCCGGTGGAGAGAGTCCGGGAGTCTCTTCGTGATATGAACTGTGCTACTTCGGATTTGGACGGGGCGTGTTCGCCGGTGGTGGCGCTGAAACGAAAGCACTCCATGAGAAGGAAATTGGGGAACAAGAAGAGTAGAATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTTTGAGTTCATCTGAAAGCACTAGTACTATTAATACTACTGCTGCTGCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

237

Amino Acids

26.44

Weight (kDa)

5.19

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	93 - 144	5.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	298, 318, 387, 390, 411, 424, 432, 435
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	3 cut(s)	28, 68, 311
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	3 cut(s)	208, 268, 558
AgsI	TTSAA	2 cut(s)	94, 167
AhlI	ACTAGT	1 cut(s)	677
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	324, 477
AoxI	GGCC	2 cut(s)	141, 299
ApeKI	GCWGC	3 cut(s)	188, 698, 701
ApoI	RAATTY	3 cut(s)	28, 68, 311
AseI	ATTAAT	1 cut(s)	687
Asp700I	GAANNNNTTC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	467
AsuII	TTCGAA	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	175, 685, 688
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	286, 422
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	324, 477
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	3 cut(s)	65, 362, 678
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	536
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	9 cut(s)	189, 299, 318, 387, 390, 411, 435, 699, 702
BlsI	GCNGC	9 cut(s)	190, 300, 319, 388, 391, 412, 436, 700, 703
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	2 cut(s)	49, 120
Bpu14I	TTCGAA	1 cut(s)	624
BpuMI	CCSGG	1 cut(s)	467
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	108, 138, 302
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 268, 558
Bse118I	RCCGGY	1 cut(s)	523
BseDI	CCNNGG	3 cut(s)	108, 138, 302
BseGI	GGATG	5 cut(s)	38, 64, 135, 194, 236
BseLI	CCNNNNNNNGG	3 cut(s)	208, 268, 558
BseMII	CTCAG	2 cut(s)	36, 198
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	175, 685, 688
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	143, 301
BsiEI	CGRYCG	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	452, 466, 524
BslI	CCNNNNNNNGG	3 cut(s)	208, 268, 558
BsmAI	GTCTC	2 cut(s)	324, 477
BsnI	GGCC	2 cut(s)	143, 301
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	8 cut(s)	298, 318, 387, 390, 411, 424, 432, 435
BspANI	GGCC	2 cut(s)	143, 301
BspCNI	CTCAG	2 cut(s)	37, 197
BspLI	GGNNCC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	108, 138, 302
BssMI	GATC	1 cut(s)	403
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	377, 491
Bst6I	CTCTTC	3 cut(s)	90, 480, 572
BstACI	GRCGYC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	624
BstDEI	CTNAG	2 cut(s)	45, 184
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	5 cut(s)	38, 64, 135, 194, 236
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	2 cut(s)	324, 477
BstMBI	GATC	1 cut(s)	403
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 395, 416
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	175, 685, 688
BstZI	CGGCCG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	143, 301
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	5 cut(s)	38, 64, 135, 194, 236
BtsIMutI	CAGTG	1 cut(s)	382
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	523
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	681
CviAII	CATG	3 cut(s)	344, 421, 553
CviJI	RGCY	8 cut(s)	143, 188, 301, 361, 386, 398, 410, 429
CviKI_1	RGCY	8 cut(s)	143, 188, 301, 361, 386, 398, 410, 429
CviQI	GTAC	1 cut(s)	681
DdeI	CTNAG	2 cut(s)	45, 184
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	299
EagI	CGGCCG	1 cut(s)	299
Eam1104I	CTCTTC	3 cut(s)	90, 480, 572
EarI	CTCTTC	3 cut(s)	90, 480, 572
EciI	GGCGGA	1 cut(s)	421
EclXI	CGGCCG	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	347, 424, 556
FaiI	YATR	6 cut(s)	206, 345, 402, 422, 485, 554
FatI	CATG	3 cut(s)	343, 420, 552
FauI	CCCGC	1 cut(s)	417
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	9 cut(s)	189, 299, 318, 387, 390, 411, 435, 699, 702
FokI	GGATG	5 cut(s)	25, 71, 142, 181, 223
FriOI	GRGCYC	1 cut(s)	431
Fsp4HI	GCNGC	9 cut(s)	189, 299, 318, 387, 390, 411, 435, 699, 702
FspBI	CTAG	3 cut(s)	65, 362, 678
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	9 cut(s)	189, 299, 318, 387, 390, 411, 435, 699, 702
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	143, 301
HapII	CCGG	3 cut(s)	452, 466, 524
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	347, 424, 556
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HinfI	GANTC	5 cut(s)	104, 230, 332, 462, 470
HpaII	CCGG	3 cut(s)	452, 466, 524
Hpy188I	TCNGA	8 cut(s)	34, 46, 109, 229, 241, 293, 502, 670
Hpy188III	TCNNGA	2 cut(s)	65, 479
HpyAV	CCTTC	3 cut(s)	262, 288, 552
HpyCH4III	ACNGT	2 cut(s)	377, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 395, 416
HpyF3I	CTNAG	2 cut(s)	45, 184
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	347, 424, 556
HspAI	GCGC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	2 cut(s)	434, 635
LpnPI	CCDG	4 cut(s)	352, 465, 479, 537
Lsp1109I	GCAGC	3 cut(s)	175, 685, 688
LweI	GCATC	2 cut(s)	49, 120
MaeI	CTAG	3 cut(s)	65, 362, 678
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	6 cut(s)	4, 28, 68, 311, 563, 706
MlyI	GAGTC	4 cut(s)	98, 326, 471, 479
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	6 cut(s)	52, 103, 169, 202, 278, 594
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	3 cut(s)	452, 466, 524
MspR9I	CCNGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	386, 395, 416
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	347, 424, 556
NlaIV	GGNNCC	1 cut(s)	430
NmeAIII	GCCGAG	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	9 cut(s)	190, 300, 319, 388, 391, 412, 436, 700, 703
PleI	GAGTC	4 cut(s)	98, 326, 470, 478
PpsI	GAGTC	4 cut(s)	98, 326, 470, 478
PshBI	ATTAAT	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	9 cut(s)	189, 299, 318, 387, 390, 411, 435, 699, 702
Sau3AI	GATC	1 cut(s)	403
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	4 cut(s)	98, 326, 471, 479
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	431
SetI	ASST	3 cut(s)	161, 190, 605
SfaNI	GCATC	2 cut(s)	49, 120
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	624
SgrAI	CRCCGGYG	1 cut(s)	523
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	6 cut(s)	4, 28, 68, 311, 563, 706
SsiI	CCGC	8 cut(s)	298, 318, 387, 390, 411, 424, 432, 435
SspMI	CTAG	3 cut(s)	65, 362, 678
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	377, 491
TaqI	TCGA	2 cut(s)	335, 624
TasI	AATT	6 cut(s)	4, 28, 68, 311, 563, 706
TatI	WGTACW	1 cut(s)	680
TauI	GCSGC	6 cut(s)	301, 320, 389, 392, 413, 437
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	3 cut(s)	188, 698, 701
TspDTI	ATGAA	4 cut(s)	17, 111, 500, 654
TspRI	CASTG	1 cut(s)	382
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	3 cut(s)	28, 68, 311
XbaI	TCTAGA	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	3 cut(s)	65, 362, 678
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.