Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

3117445 .. 3119024

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGGTATTGGGACAACCACAATATGAGCAGCTACACAACCACAAACACATTCCAAGCAGAAACTACTTCAAACATCTCCGATTTCCAAATGAACAACTCTATCTTCCACTCCCCAAATTCTGAAACTTCTTCCGAGTTTTCTTGGGATGCTCTCGAATTCGGCAATACTTCTCTTCCTTTCAACGAAAACGACTCCGAGGAAATGCTTCTCCTTGGGATGCTTTCCAAGGCCACCCAAGAAACTACCTCATTCGAAACAGAAACACACAACTCAGCTGCCTCATCCAACCCCATAAAGCAGGAAGAAGAAGTATGCTCCGATTCTACGTCCGAAGAAGAAAAACAGAAAACCCCGAAGAAGGACAAGTCCTACAGAGGCGTCAGACGGCGACCGTGGGGAAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGGGTTTGGCTAGGCACATTTGACAGTGCTGAAGCCGCAGCTTTGGCCTATGACCAAGCCGCCTTTGCCATGCGGGGCTCCGCCGCCGTTCTCAACTTCCCGGTGGAGAGAGTCCGGGAATCTCTTCGTGACATGAACTGTGCTACTTCGGATTTGGACGGGACGTGTTCGCCAGTGGTGGCGCTAAAACGAAAGCACTCGATGAGAAGGAAAATGGGGAACAAGAAGAGTAAGATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTCTGAGTTCATCTGATCAGAGCACTTGTACTACTACTGCTGCTGCTGGTAAATATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

270

Amino Acids

30.18

Weight (kDa)

5.2

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 175	6.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	411, 480, 504, 517, 525, 528
AcsI	RAATTY	3 cut(s)	118, 158, 404
AcuI	CTGAAG	1 cut(s)	495
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	2 cut(s)	72, 184
AjiI	CACGTC	1 cut(s)	609
AluBI	AGCT	3 cut(s)	33, 278, 485
AluI	AGCT	3 cut(s)	33, 278, 485
Alw21I	GWGCWC	1 cut(s)	773
Alw26I	GTCTC	1 cut(s)	417
AoxI	GGCC	2 cut(s)	231, 489
ApeKI	GCWGC	5 cut(s)	30, 278, 482, 788, 791
ApoI	RAATTY	3 cut(s)	118, 158, 404
Asp700I	GAANNNNTTC	3 cut(s)	207, 567, 747
AspLEI	GCGC	1 cut(s)	628
AsuC2I	CCSGG	2 cut(s)	545, 560
AsuII	TTCGAA	2 cut(s)	255, 717
BanII	GRGCYC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	773
BbvI	GCAGC	5 cut(s)	42, 265, 494, 775, 778
BccI	CCATC	1 cut(s)	673
BceAI	ACGGC	2 cut(s)	404, 515
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	545, 560
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	455
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	629
BisI	GCNGC	9 cut(s)	31, 279, 411, 480, 483, 504, 528, 789, 792
BlsI	GCNGC	9 cut(s)	32, 280, 412, 481, 484, 505, 529, 790, 793
Bme1390I	CCNGG	2 cut(s)	545, 560
BmgBI	CACGTC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	2 cut(s)	545, 560
BmsI	GCATC	2 cut(s)	139, 210
Bpu14I	TTCGAA	2 cut(s)	255, 717
BpuMI	CCSGG	2 cut(s)	545, 560
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	198, 214, 228, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	617
BseDI	CCNNGG	4 cut(s)	198, 214, 228, 395
BseGI	GGATG	3 cut(s)	154, 225, 284
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	288, 743
BseNI	ACTGG	1 cut(s)	617
BseXI	GCAGC	5 cut(s)	42, 265, 494, 775, 778
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	233, 491
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	545, 559
BslFI	GGGAC	2 cut(s)	26, 619
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	26, 619
BsnI	GGCC	2 cut(s)	233, 491
Bsp119I	TTCGAA	2 cut(s)	255, 717
Bsp1286I	GDGCHC	2 cut(s)	524, 773
Bsp143I	GATC	1 cut(s)	763
BspACI	CCGC	6 cut(s)	411, 480, 504, 517, 525, 528
BspANI	GGCC	2 cut(s)	233, 491
BspCNI	CTCAG	2 cut(s)	287, 744
BspLI	GGNNCC	1 cut(s)	523
BspT104I	TTCGAA	2 cut(s)	255, 717
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	198, 214, 228, 395
BssMI	GATC	1 cut(s)	763
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	214, 228
Bst4CI	ACNGT	3 cut(s)	396, 470, 584
Bst6I	CTCTTC	3 cut(s)	180, 573, 665
BstACI	GRCGYC	1 cut(s)	381
BstBI	TTCGAA	2 cut(s)	255, 717
BstDEI	CTNAG	2 cut(s)	274, 752
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	154, 225, 284
BstH2I	RGCGCY	1 cut(s)	629
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	1 cut(s)	766
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	1 cut(s)	763
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 488, 509
BstSCI	CCNGG	2 cut(s)	543, 558
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	5 cut(s)	42, 265, 494, 775, 778
BsuRI	GGCC	2 cut(s)	233, 491
BtgI	CCRYGG	1 cut(s)	395
BtrI	CACGTC	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	154, 225, 284
BtsIMutI	CAGTG	2 cut(s)	475, 624
CfoI	GCGC	1 cut(s)	628
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	3 cut(s)	437, 514, 577
CviJI	RGCY	9 cut(s)	33, 233, 278, 454, 479, 485, 491, 503, 522
CviKI_1	RGCY	9 cut(s)	33, 233, 278, 454, 479, 485, 491, 503, 522
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	2 cut(s)	274, 752
DpnI	GATC	1 cut(s)	765
DpnII	GATC	1 cut(s)	763
Eam1104I	CTCTTC	3 cut(s)	180, 573, 665
EarI	CTCTTC	3 cut(s)	180, 573, 665
EciI	GGCGGA	1 cut(s)	514
Eco130I	CCWWGG	2 cut(s)	214, 228
Eco24I	GRGCYC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	214, 228
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	2 cut(s)	214, 228
FaeI	CATG	3 cut(s)	440, 517, 580
FaiI	YATR	7 cut(s)	26, 296, 316, 438, 495, 515, 578
FaqI	GGGAC	2 cut(s)	26, 619
FatI	CATG	3 cut(s)	436, 513, 576
FauI	CCCGC	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	9 cut(s)	31, 279, 411, 480, 483, 504, 528, 789, 792
FokI	GGATG	3 cut(s)	161, 232, 271
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	9 cut(s)	31, 279, 411, 480, 483, 504, 528, 789, 792
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	1 cut(s)	627
GluI	GCNGC	9 cut(s)	31, 279, 411, 480, 483, 504, 528, 789, 792
HaeII	RGCGCY	1 cut(s)	629
HaeIII	GGCC	2 cut(s)	233, 491
HapII	CCGG	2 cut(s)	545, 559
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	628
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	440, 517, 580
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HinfI	GANTC	5 cut(s)	194, 323, 425, 555, 563
HpaII	CCGG	2 cut(s)	545, 559
Hpy188III	TCNNGA	2 cut(s)	155, 572
HpyAV	CCTTC	2 cut(s)	355, 645
HpyCH4III	ACNGT	3 cut(s)	396, 470, 584
HpyCH4IV	ACGT	2 cut(s)	329, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 488, 509
HpyF3I	CTNAG	2 cut(s)	274, 752
HpySE526I	ACGT	2 cut(s)	329, 608
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	440, 517, 580
HspAI	GCGC	1 cut(s)	626
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	1 cut(s)	763
LmnI	GCTCC	3 cut(s)	323, 527, 728
LpnPI	CCDG	6 cut(s)	287, 445, 558, 572, 630, 780
Lsp1109I	GCAGC	5 cut(s)	42, 265, 494, 775, 778
LweI	GCATC	2 cut(s)	139, 210
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	2 cut(s)	329, 608
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	1 cut(s)	765
MboI	GATC	1 cut(s)	763
MhlI	GDGCHC	2 cut(s)	524, 773
MluCI	AATT	3 cut(s)	118, 158, 404
MlyI	GAGTC	3 cut(s)	188, 419, 564
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	193, 259, 292, 371, 687
MroXI	GAANNNNTTC	3 cut(s)	207, 567, 747
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	545, 559
MspR9I	CCNGG	2 cut(s)	545, 560
MwoI	GCNNNNNNNGC	3 cut(s)	479, 488, 509
NciI	CCSGG	2 cut(s)	545, 560
NdeII	GATC	1 cut(s)	763
NlaIII	CATG	3 cut(s)	440, 517, 580
NlaIV	GGNNCC	1 cut(s)	523
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	572
NspV	TTCGAA	2 cut(s)	255, 717
PdmI	GAANNNNTTC	3 cut(s)	207, 567, 747
PfeI	GAWTC	2 cut(s)	323, 563
PfoI	TCCNGGA	1 cut(s)	558
PkrI	GCNGC	9 cut(s)	32, 280, 412, 481, 484, 505, 529, 790, 793
PleI	GAGTC	3 cut(s)	188, 419, 563
PpsI	GAGTC	3 cut(s)	188, 419, 563
PspN4I	GGNNCC	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
SatI	GCNGC	9 cut(s)	31, 279, 411, 480, 483, 504, 528, 789, 792
Sau3AI	GATC	1 cut(s)	763
SchI	GAGTC	3 cut(s)	188, 419, 564
ScrFI	CCNGG	2 cut(s)	545, 560
SduI	GDGCHC	2 cut(s)	524, 773
SetI	ASST	7 cut(s)	35, 251, 280, 332, 487, 611, 698
SfaNI	GCATC	2 cut(s)	139, 210
SfcI	CTRYAG	1 cut(s)	373
SfuI	TTCGAA	2 cut(s)	255, 717
Sse9I	AATT	3 cut(s)	118, 158, 404
SsiI	CCGC	6 cut(s)	411, 480, 504, 517, 525, 528
SspI	AATATT	1 cut(s)	803
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	543, 558
StyI	CCWWGG	2 cut(s)	214, 228
TaaI	ACNGT	3 cut(s)	396, 470, 584
TaiI	ACGT	2 cut(s)	332, 611
TaqI	TCGA	5 cut(s)	156, 255, 428, 644, 717
TasI	AATT	3 cut(s)	118, 158, 404
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	4 cut(s)	413, 482, 506, 530
TfiI	GAWTC	2 cut(s)	323, 563
TscAI	CASTG	2 cut(s)	475, 624
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	5 cut(s)	30, 278, 482, 788, 791
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	3 cut(s)	107, 593, 747
TspRI	CASTG	2 cut(s)	475, 624
XapI	RAATTY	3 cut(s)	118, 158, 404
XmnI	GAANNNNTTC	3 cut(s)	207, 567, 747
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.