Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

2632301 .. 2633915

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAATTACTCAATCTTCCACTCCCCAATTTCCGATTTGTCACCTGAATCTTCATTCGGATCATCATTTTCTTGGGATGATCACAAATTTGGCAACAACTCACTTCCCTTCAACGAAAACGACTCCGAAGAAATGCTTCTCTATGGCCTAATTTCCAACGCCACCCAGGAAATAACATCAAGAGAAACAGAGACACTCTCTGTTTCTGCAAACCCAATCAAGGAAGAGGAAGTGAGCTCCACGTCCGACTCGGAGAACCCGAAAAGGGAAAAGTCGTACAGAGGGGTGAGGAGGCGGCCATGGGGCAAGTTTGCTGCTGAAATTAGAGACTCCACCAGGCACGGCATAAGGGTGTGGCTAGGCACATTTGACAGTGCCGAAGCTGCAGCCTTGGCCTATGATCAGGCCGCCTTTTCGATGCGTGGCTCCGCGGCGATTCTCAACTTTCCGGTGGAGAGAGTCCGAGAATCGCTTAAAGAAATCAACTATGTCGCTTCGGATTTGAACGGGGGCTCGCCGGTTGTGGCGCTCAAAAGAAAGCACTCCATGAGAAGGAAAATCGGGAACAAGAAGAGCAAAGTGGAGAGAGACGTGAGGATAGAAAATGTGGTGGTGTTTGAAGATTTAGGCGCAGATTACTTGGAAGAATTGTTAAATTCATCTGAGAGCACATGTGCCACTGCCACACCTAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

25.95

Weight (kDa)

5.54

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	4 cut(s)	295, 408, 429, 431
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	86, 655
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	220, 265, 552
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	112, 505, 620
AjiI	CACGTC	2 cut(s)	243, 592
AjnI	CCWGG	2 cut(s)	165, 335
AluBI	AGCT	2 cut(s)	237, 383
AluI	AGCT	2 cut(s)	237, 383
Alw21I	GWGCWC	2 cut(s)	239, 671
Alw26I	GTCTC	3 cut(s)	185, 321, 582
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	4 cut(s)	145, 296, 393, 405
ApeKI	GCWGC	3 cut(s)	314, 383, 386
ApoI	RAATTY	2 cut(s)	86, 655
Asp700I	GAANNNNTTC	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	529, 632
AsuHPI	GGTGA	2 cut(s)	33, 298
BanII	GRGCYC	2 cut(s)	239, 515
Bbv12I	GWGCWC	2 cut(s)	239, 671
BbvI	GCAGC	3 cut(s)	301, 370, 398
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	2 cut(s)	167, 337
BclI	TGATCA	2 cut(s)	79, 400
BcoDI	GTCTC	3 cut(s)	185, 321, 582
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	530
BisI	GCNGC	6 cut(s)	296, 315, 384, 387, 408, 432
BlsI	GCNGC	6 cut(s)	297, 316, 385, 388, 409, 433
Bme1390I	CCNGG	2 cut(s)	167, 337
BmgBI	CACGTC	2 cut(s)	243, 592
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	167, 337
BmsI	GCATC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BsaJI	CCNNGG	4 cut(s)	165, 299, 390, 429
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 265, 552
Bse118I	RCCGGY	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	167, 337
BseDI	CCNNGG	4 cut(s)	165, 299, 390, 429
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	3 cut(s)	220, 265, 552
BseMII	CTCAG	1 cut(s)	654
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	301, 370, 398
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	4 cut(s)	147, 298, 395, 407
BsiHKAI	GWGCWC	2 cut(s)	239, 671
BsiSI	CCGG	2 cut(s)	449, 518
BslI	CCNNNNNNNGG	3 cut(s)	220, 265, 552
BsmAI	GTCTC	3 cut(s)	185, 321, 582
BsmBI	CGTCTC	1 cut(s)	582
BsnI	GGCC	4 cut(s)	147, 298, 395, 407
Bsp1286I	GDGCHC	3 cut(s)	239, 515, 671
Bsp143I	GATC	3 cut(s)	59, 79, 400
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	4 cut(s)	295, 408, 429, 431
BspANI	GGCC	4 cut(s)	147, 298, 395, 407
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	4 cut(s)	165, 299, 390, 429
BssMI	GATC	3 cut(s)	59, 79, 400
BssT1I	CCWWGG	2 cut(s)	299, 390
Bst2UI	CCWGG	2 cut(s)	167, 337
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	219, 566
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	2 cut(s)	299, 429
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	2 cut(s)	529, 632
BstKTI	GATC	3 cut(s)	62, 82, 403
BstMAI	GTCTC	3 cut(s)	185, 321, 582
BstMBI	GATC	3 cut(s)	59, 79, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 392
BstNI	CCWGG	2 cut(s)	167, 337
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	2 cut(s)	165, 335
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	3 cut(s)	301, 370, 398
BsuRI	GGCC	4 cut(s)	147, 298, 395, 407
BtgI	CCRYGG	2 cut(s)	299, 429
BtrI	CACGTC	2 cut(s)	243, 592
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	379, 678
Cac8I	GCNNGC	1 cut(s)	515
CfoI	GCGC	2 cut(s)	529, 632
Cfr10I	RCCGGY	1 cut(s)	517
Cfr42I	CCGCGG	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	300, 547, 672
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	3 cut(s)	61, 81, 402
DpnII	GATC	3 cut(s)	59, 79, 400
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	219, 566
EarI	CTCTTC	2 cut(s)	219, 566
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	299, 390
Eco24I	GRGCYC	2 cut(s)	239, 515
Eco53kI	GAGCTC	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	165, 335
EcoT14I	CCWWGG	2 cut(s)	299, 390
EcoT38I	GRGCYC	2 cut(s)	239, 515
ErhI	CCWWGG	2 cut(s)	299, 390
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	3 cut(s)	303, 550, 675
FaiI	YATR	7 cut(s)	144, 301, 347, 399, 489, 548, 673
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	3 cut(s)	299, 546, 671
FbaI	TGATCA	2 cut(s)	79, 400
Fnu4HI	GCNGC	6 cut(s)	296, 315, 384, 387, 408, 432
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	2 cut(s)	239, 515
Fsp4HI	GCNGC	6 cut(s)	296, 315, 384, 387, 408, 432
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	528, 631
GluI	GCNGC	6 cut(s)	296, 315, 384, 387, 408, 432
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	4 cut(s)	147, 298, 395, 407
HapII	CCGG	2 cut(s)	449, 518
HhaI	GCGC	2 cut(s)	529, 632
Hin1II	CATG	3 cut(s)	303, 550, 675
Hin6I	GCGC	2 cut(s)	527, 630
HinP1I	GCGC	2 cut(s)	527, 630
HinfI	GANTC	7 cut(s)	47, 122, 248, 329, 436, 459, 467
HpaII	CCGG	2 cut(s)	449, 518
HphI	GGTGA	2 cut(s)	33, 298
Hpy188I	TCNGA	8 cut(s)	34, 59, 127, 247, 253, 464, 499, 664
Hpy188III	TCNNGA	2 cut(s)	180, 562
HpyAV	CCTTC	2 cut(s)	118, 546
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	2 cut(s)	242, 591
HpyCH4V	TGCA	2 cut(s)	209, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 392
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	2 cut(s)	242, 591
Hsp92II	CATG	3 cut(s)	303, 550, 675
HspAI	GCGC	2 cut(s)	527, 630
Ksp22I	TGATCA	2 cut(s)	79, 400
KspI	CCGCGG	1 cut(s)	432
Kzo9I	GATC	3 cut(s)	59, 79, 400
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	242, 431
LpnPI	CCDG	8 cut(s)	57, 152, 179, 322, 349, 389, 462, 531
Lsp1109I	GCAGC	3 cut(s)	301, 370, 398
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	242, 591
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	3 cut(s)	61, 81, 402
MboI	GATC	3 cut(s)	59, 79, 400
MboII	GAAGA	7 cut(s)	7, 42, 140, 236, 583, 632, 656
MhlI	GDGCHC	3 cut(s)	239, 515, 671
MluCI	AATT	7 cut(s)	4, 27, 86, 150, 321, 647, 655
MlyI	GAGTC	4 cut(s)	116, 242, 323, 468
MmeI	TCCRAC	2 cut(s)	180, 270
MnlI	CCTC	5 cut(s)	220, 275, 282, 285, 588
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	2 cut(s)	474, 653
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	2 cut(s)	449, 518
MspR9I	CCNGG	2 cut(s)	167, 337
MvaI	CCWGG	2 cut(s)	167, 337
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	2 cut(s)	383, 392
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	59, 79, 400
NlaIII	CATG	3 cut(s)	303, 550, 675
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	1 cut(s)	675
PciI	ACATGT	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	47, 436, 467
PkrI	GCNGC	6 cut(s)	297, 316, 385, 388, 409, 433
PleI	GAGTC	4 cut(s)	116, 242, 323, 467
PpsI	GAGTC	4 cut(s)	116, 242, 323, 467
PscI	ACATGT	1 cut(s)	671
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	165, 335
PspGI	CCWGG	2 cut(s)	165, 335
PspN4I	GGNNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	239
SacII	CCGCGG	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	474, 653
SatI	GCNGC	6 cut(s)	296, 315, 384, 387, 408, 432
Sau3AI	GATC	3 cut(s)	59, 79, 400
SchI	GAGTC	4 cut(s)	116, 242, 323, 468
ScrFI	CCNGG	2 cut(s)	167, 337
SduI	GDGCHC	3 cut(s)	239, 515, 671
SetI	ASST	6 cut(s)	46, 239, 245, 385, 594, 691
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	384
Sfr303I	CCGCGG	1 cut(s)	432
SgrBI	CCGCGG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	7 cut(s)	4, 27, 86, 150, 321, 647, 655
SsiI	CCGC	4 cut(s)	295, 408, 429, 431
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	165, 335
StyI	CCWWGG	2 cut(s)	299, 390
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	2 cut(s)	245, 594
TaqI	TCGA	1 cut(s)	416
TasI	AATT	7 cut(s)	4, 27, 86, 150, 321, 647, 655
TauI	GCSGC	3 cut(s)	298, 410, 434
TfiI	GAWTC	3 cut(s)	47, 436, 467
Tru1I	TTAA	2 cut(s)	474, 653
Tru9I	TTAA	2 cut(s)	474, 653
TscAI	CASTG	2 cut(s)	379, 685
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	3 cut(s)	314, 383, 386
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	3 cut(s)	17, 42, 648
TspRI	CASTG	2 cut(s)	379, 685
XapI	RAATTY	2 cut(s)	86, 655
XceI	RCATGY	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.