Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

9016951 .. 9018072

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG043300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGCTATTGGGACAACAACCACATTATGAGTAGCCACTCGATCACAAACACATTCCAAACAGAAAACTCAAACATCTCCGATTTCCAAATGAATTACTCCATCTTCCACTCCCCAAATTCTGATACATCCTCTGAGTTTTCTTGGGATGCTCTAGAATTTGGCAATACTTCTCTTCCTTTCAATGAAAACGACTCCGAGGAAATGCTTCTCTTTGGGATGCTATCCAAGGCCACCCAAGAAACTACCTCATTTGAAACAGAAACACATAACTCAGCTGCCTCATCCAACCCCATAAAGGAAGAAGAAGTGAGTTCCGATTCCACATCCGAAGAAGAAAACCCGAAAACCCCGAAGAAGGAGAAGTCCTACAGAGGCGTCAGAAGGCGGCCGTGGGGCAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGAGTTTGGCTAGGAACATTTGACAGTGCTGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTGCCATGCGGGGCTCCGCCGCCGTTCTCAACTTTCCGGTGGAGAGAGTCCGGGAGTCTCTTCGTGATATGAACTGTGCTACTTCGGATTTGGACGGGGGGTGTTCGCCGGTGGTGGCGCTGAAACGAAAGCACTCGATGAGAAGGAAATTGGGGAACAAGAAGAGTAGAATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTTTGAGTTCATCTGAAAGCACTAGTACTACTACTGCTGCTGCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

265

Amino Acids

29.7

Weight (kDa)

5.11

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	123 - 174	6.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	388, 408, 477, 480, 501, 514, 522, 525
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	3 cut(s)	118, 158, 401
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	1 cut(s)	772
AfiI	CCNNNNNNNGG	2 cut(s)	298, 358
AgsI	TTSAA	2 cut(s)	184, 257
AhlI	ACTAGT	1 cut(s)	767
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	414, 567
AoxI	GGCC	3 cut(s)	231, 389, 486
ApeKI	GCWGC	3 cut(s)	278, 782, 785
ApoI	RAATTY	3 cut(s)	118, 158, 401
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	625
AsuC2I	CCSGG	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	265, 769, 772
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	376, 512
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	2 cut(s)	414, 567
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	3 cut(s)	155, 452, 768
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	485
BisI	GCNGC	9 cut(s)	279, 389, 408, 477, 480, 501, 525, 783, 786
BlsI	GCNGC	9 cut(s)	280, 390, 409, 478, 481, 502, 526, 784, 787
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	2 cut(s)	139, 210
Bpu14I	TTCGAA	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	198, 228, 392
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 358
Bse118I	RCCGGY	1 cut(s)	613
BseDI	CCNNGG	3 cut(s)	198, 228, 392
BseGI	GGATG	5 cut(s)	128, 154, 225, 284, 326
BseLI	CCNNNNNNNGG	2 cut(s)	298, 358
BseMII	CTCAG	2 cut(s)	126, 288
BseX3I	CGGCCG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	265, 769, 772
Bsh1285I	CGRYCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	233, 391, 488
BsiEI	CGRYCG	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	542, 556, 614
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	298, 358
BsmAI	GTCTC	2 cut(s)	414, 567
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	233, 391, 488
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	42, 493
BspACI	CCGC	8 cut(s)	388, 408, 477, 480, 501, 514, 522, 525
BspANI	GGCC	3 cut(s)	233, 391, 488
BspCNI	CTCAG	2 cut(s)	127, 287
BspLI	GGNNCC	1 cut(s)	520
BspT104I	TTCGAA	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	3 cut(s)	198, 228, 392
BssMI	GATC	2 cut(s)	42, 493
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	467, 581
Bst6I	CTCTTC	3 cut(s)	180, 570, 662
BstACI	GRCGYC	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	714
BstDEI	CTNAG	2 cut(s)	135, 274
BstDSI	CCRYGG	1 cut(s)	392
BstF5I	GGATG	5 cut(s)	128, 154, 225, 284, 326
BstH2I	RGCGCY	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	2 cut(s)	45, 496
BstMAI	GTCTC	2 cut(s)	414, 567
BstMBI	GATC	2 cut(s)	42, 493
BstMCI	CGRYCG	1 cut(s)	392
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 485, 506
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	265, 769, 772
BstZI	CGGCCG	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	233, 391, 488
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	5 cut(s)	128, 154, 225, 284, 326
BtsIMutI	CAGTG	1 cut(s)	472
CfoI	GCGC	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	613
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	771
CviAII	CATG	2 cut(s)	434, 511
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	2 cut(s)	135, 274
DpnI	GATC	2 cut(s)	44, 495
DpnII	GATC	2 cut(s)	42, 493
EaeI	YGGCCR	1 cut(s)	389
EagI	CGGCCG	1 cut(s)	389
Eam1104I	CTCTTC	3 cut(s)	180, 570, 662
EarI	CTCTTC	3 cut(s)	180, 570, 662
EciI	GGCGGA	1 cut(s)	511
EclXI	CGGCCG	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	521
Eco52I	CGGCCG	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	437, 514
FaiI	YATR	6 cut(s)	29, 270, 296, 435, 512, 575
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	433, 510
FauI	CCCGC	1 cut(s)	507
Fnu4HI	GCNGC	9 cut(s)	279, 389, 408, 477, 480, 501, 525, 783, 786
FokI	GGATG	5 cut(s)	115, 161, 232, 271, 313
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	9 cut(s)	279, 389, 408, 477, 480, 501, 525, 783, 786
FspBI	CTAG	3 cut(s)	155, 452, 768
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	9 cut(s)	279, 389, 408, 477, 480, 501, 525, 783, 786
HaeII	RGCGCY	1 cut(s)	626
HaeIII	GGCC	3 cut(s)	233, 391, 488
HapII	CCGG	3 cut(s)	542, 556, 614
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	625
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	437, 514
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HinfI	GANTC	5 cut(s)	194, 320, 422, 552, 560
HpaII	CCGG	3 cut(s)	542, 556, 614
Hpy188I	TCNGA	9 cut(s)	82, 124, 136, 199, 319, 331, 383, 592, 760
Hpy188III	TCNNGA	2 cut(s)	155, 569
HpyAV	CCTTC	3 cut(s)	352, 378, 642
HpyCH4III	ACNGT	2 cut(s)	467, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 485, 506
HpyF3I	CTNAG	2 cut(s)	135, 274
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	437, 514
HspAI	GCGC	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	42, 493
LmnI	GCTCC	2 cut(s)	524, 725
LpnPI	CCDG	4 cut(s)	442, 555, 569, 627
Lsp1109I	GCAGC	3 cut(s)	265, 769, 772
LweI	GCATC	2 cut(s)	139, 210
MaeI	CTAG	3 cut(s)	155, 452, 768
MalI	GATC	2 cut(s)	44, 495
MboI	GATC	2 cut(s)	42, 493
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	6 cut(s)	94, 118, 158, 401, 653, 790
MlyI	GAGTC	4 cut(s)	188, 416, 561, 569
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	142, 193, 259, 292, 368, 684
MroXI	GAANNNNTTC	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	542, 556, 614
MspR9I	CCNGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	476, 485, 506
NciI	CCSGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	42, 493
NlaIII	CATG	2 cut(s)	437, 514
NlaIV	GGNNCC	1 cut(s)	520
NmeAIII	GCCGAG	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	9 cut(s)	280, 390, 409, 478, 481, 502, 526, 784, 787
PleI	GAGTC	4 cut(s)	188, 416, 560, 568
PpsI	GAGTC	4 cut(s)	188, 416, 560, 568
PspN4I	GGNNCC	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
SatI	GCNGC	9 cut(s)	279, 389, 408, 477, 480, 501, 525, 783, 786
Sau3AI	GATC	2 cut(s)	42, 493
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	4 cut(s)	188, 416, 561, 569
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	3 cut(s)	251, 280, 695
SfaNI	GCATC	2 cut(s)	139, 210
SfcI	CTRYAG	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	714
SgrAI	CRCCGGYG	1 cut(s)	613
SpeI	ACTAGT	1 cut(s)	767
Sse9I	AATT	6 cut(s)	94, 118, 158, 401, 653, 790
SsiI	CCGC	8 cut(s)	388, 408, 477, 480, 501, 514, 522, 525
SspMI	CTAG	3 cut(s)	155, 452, 768
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	467, 581
TaqI	TCGA	4 cut(s)	41, 425, 641, 714
TasI	AATT	6 cut(s)	94, 118, 158, 401, 653, 790
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	6 cut(s)	391, 410, 479, 482, 503, 527
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	3 cut(s)	278, 782, 785
TspDTI	ATGAA	4 cut(s)	107, 201, 590, 744
TspRI	CASTG	1 cut(s)	472
XapI	RAATTY	3 cut(s)	118, 158, 401
XbaI	TCTAGA	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	3 cut(s)	155, 452, 768
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.