Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Reverse (-)

58071627 .. 58072433

Gene Structure 807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGCTATTGGGACAACCAGATTATGGGTAGCCACTGGATCACAAACACATTCCAAACAGAAAACTCAAACATCTCCGATTTCCAAATGAATTACTCCATCTTCCACTCCCCAAATTCTGATACATCCTCTGAGTTTTCTTGGGATGCTCTAGAATTTGGCAATACTTCTCTTCCTTTCAATGAAAACGACTCCGAGGAAATGCTTCTCTTTGGGATGCTTTCCAAGGCCACCCAAGAAACTACCTCATTTGAAACAGAAACACACAACTCAGCTGCCTCATCCAACCCCATAAAGGAAGAAGAAGTGAGTTCCGATTCCACATCCGAAGAAGAAAACCCTAAAACCCCGAAGAAGGAGAAGTCCTACAGAGGCGTCAGAAGGCGGCCGTGGGGCAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGAGTTTGGCTAGGCACATTTGACAGTGCTGAAGCCGCCGCTTTGGCTTATGATCAAGCCGCCTTTGCCATGCGGGGCTCGGCCGCCGTTCTCAACTTTCCGGTGGAGAGAGTCCGGGAGTCTCTTCGTGATATGAACTGTGCTACTTCGGATTTGGACGGGGGGTGTTCGCCGGTGGTGGCGCTGAAACGAAAGCACTCGATGAGAAGGAAATTGGGGAACAAGAAGAGTAGAATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTTTGAGTTCATCTGAAAGCACTAGTACTACTACTACTGCTGCTGTTGCTGCTGCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

269

Amino Acids

29.99

Weight (kDa)

5.04

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	122 - 173	6.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	7 cut(s)	385, 405, 474, 477, 498, 511, 522
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	386, 519
AcsI	RAATTY	3 cut(s)	115, 155, 398
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	1 cut(s)	769
AfiI	CCNNNNNNNGG	3 cut(s)	25, 295, 355
AgsI	TTSAA	2 cut(s)	181, 254
AhlI	ACTAGT	1 cut(s)	764
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Alw26I	GTCTC	2 cut(s)	411, 564
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	3 cut(s)	228, 386, 519
ApeKI	GCWGC	4 cut(s)	275, 782, 791, 794
ApoI	RAATTY	3 cut(s)	115, 155, 398
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	554
AsuII	TTCGAA	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	518
BbvI	GCAGC	4 cut(s)	262, 769, 778, 781
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	2 cut(s)	373, 509
BclI	TGATCA	1 cut(s)	490
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	411, 564
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	3 cut(s)	152, 449, 765
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	1 cut(s)	623
BglI	GCCNNNNNGGC	1 cut(s)	482
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	1 cut(s)	554
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	136, 207
Bpu14I	TTCGAA	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	195, 225, 389
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 295, 355
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	3 cut(s)	195, 225, 389
BseGI	GGATG	5 cut(s)	125, 151, 222, 281, 323
BseLI	CCNNNNNNNGG	3 cut(s)	25, 295, 355
BseMII	CTCAG	2 cut(s)	123, 285
BseNI	ACTGG	1 cut(s)	41
BseX3I	CGGCCG	2 cut(s)	386, 519
BseXI	GCAGC	4 cut(s)	262, 769, 778, 781
Bsh1285I	CGRYCG	2 cut(s)	389, 522
BshFI	GGCC	3 cut(s)	230, 388, 521
BsiEI	CGRYCG	2 cut(s)	389, 522
BsiSI	CCGG	3 cut(s)	539, 553, 611
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	25, 295, 355
BsmAI	GTCTC	2 cut(s)	411, 564
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	230, 388, 521
Bsp119I	TTCGAA	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	39, 490
BspACI	CCGC	7 cut(s)	385, 405, 474, 477, 498, 511, 522
BspANI	GGCC	3 cut(s)	230, 388, 521
BspCNI	CTCAG	2 cut(s)	124, 284
BspPI	GGATC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	3 cut(s)	195, 225, 389
BssMI	GATC	2 cut(s)	39, 490
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	464, 578
Bst6I	CTCTTC	3 cut(s)	177, 567, 659
BstACI	GRCGYC	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	711
BstDEI	CTNAG	2 cut(s)	132, 271
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	5 cut(s)	125, 151, 222, 281, 323
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	2 cut(s)	42, 493
BstMAI	GTCTC	2 cut(s)	411, 564
BstMBI	GATC	2 cut(s)	39, 490
BstMCI	CGRYCG	2 cut(s)	389, 522
BstMWI	GCNNNNNNNGC	5 cut(s)	473, 482, 503, 788, 791
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	4 cut(s)	262, 769, 778, 781
BstZI	CGGCCG	2 cut(s)	386, 519
BsuRI	GGCC	3 cut(s)	230, 388, 521
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	5 cut(s)	125, 151, 222, 281, 323
BtsIMutI	CAGTG	2 cut(s)	34, 469
CfoI	GCGC	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	610
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	768
CviAII	CATG	2 cut(s)	431, 508
CviQI	GTAC	1 cut(s)	768
DdeI	CTNAG	2 cut(s)	132, 271
DpnI	GATC	2 cut(s)	41, 492
DpnII	GATC	2 cut(s)	39, 490
EaeI	YGGCCR	2 cut(s)	386, 519
EagI	CGGCCG	2 cut(s)	386, 519
Eam1104I	CTCTTC	3 cut(s)	177, 567, 659
EarI	CTCTTC	3 cut(s)	177, 567, 659
EclXI	CGGCCG	2 cut(s)	386, 519
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	518
Eco52I	CGGCCG	2 cut(s)	386, 519
Eco57I	CTGAAG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	434, 511
FaiI	YATR	6 cut(s)	26, 293, 432, 489, 509, 572
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	430, 507
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	490
FokI	GGATG	5 cut(s)	112, 158, 229, 268, 310
FriOI	GRGCYC	1 cut(s)	518
FspBI	CTAG	3 cut(s)	152, 449, 765
GlaI	GCGC	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	230, 388, 521
HapII	CCGG	3 cut(s)	539, 553, 611
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	434, 511
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HinfI	GANTC	5 cut(s)	191, 317, 419, 549, 557
HpaII	CCGG	3 cut(s)	539, 553, 611
Hpy188I	TCNGA	9 cut(s)	79, 121, 133, 196, 316, 328, 380, 589, 757
Hpy188III	TCNNGA	2 cut(s)	152, 566
HpyAV	CCTTC	3 cut(s)	349, 375, 639
HpyCH4III	ACNGT	2 cut(s)	464, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	473, 482, 503, 788, 791
HpyF3I	CTNAG	2 cut(s)	132, 271
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	434, 511
HspAI	GCGC	1 cut(s)	620
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	2 cut(s)	39, 490
LmnI	GCTCC	1 cut(s)	722
LpnPI	CCDG	6 cut(s)	22, 32, 439, 552, 566, 624
Lsp1109I	GCAGC	4 cut(s)	262, 769, 778, 781
LweI	GCATC	2 cut(s)	136, 207
MaeI	CTAG	3 cut(s)	152, 449, 765
MalI	GATC	2 cut(s)	41, 492
MboI	GATC	2 cut(s)	39, 490
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	6 cut(s)	91, 115, 155, 398, 650, 799
MlyI	GAGTC	4 cut(s)	185, 413, 558, 566
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	6 cut(s)	139, 190, 256, 289, 365, 681
MroXI	GAANNNNTTC	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	539, 553, 611
MspR9I	CCNGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	5 cut(s)	473, 482, 503, 788, 791
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	39, 490
NlaIII	CATG	2 cut(s)	434, 511
NmeAIII	GCCGAG	2 cut(s)	433, 497
NspV	TTCGAA	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	317
PflMI	CCANNNNNTGG	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	552
PleI	GAGTC	4 cut(s)	185, 413, 557, 565
PpsI	GAGTC	4 cut(s)	185, 413, 557, 565
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	769
RsaNI	GTAC	1 cut(s)	768
Sau3AI	GATC	2 cut(s)	39, 490
ScaI	AGTACT	1 cut(s)	769
SchI	GAGTC	4 cut(s)	185, 413, 558, 566
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	3 cut(s)	248, 277, 692
SfaNI	GCATC	2 cut(s)	136, 207
SfcI	CTRYAG	1 cut(s)	367
SfuI	TTCGAA	1 cut(s)	711
SgrAI	CRCCGGYG	1 cut(s)	610
SpeI	ACTAGT	1 cut(s)	764
Sse9I	AATT	6 cut(s)	91, 115, 155, 398, 650, 799
SsiI	CCGC	7 cut(s)	385, 405, 474, 477, 498, 511, 522
SspMI	CTAG	3 cut(s)	152, 449, 765
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	464, 578
TaqI	TCGA	3 cut(s)	422, 638, 711
TasI	AATT	6 cut(s)	91, 115, 155, 398, 650, 799
TatI	WGTACW	1 cut(s)	767
TauI	GCSGC	6 cut(s)	388, 407, 476, 479, 500, 524
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	2 cut(s)	41, 469
TseI	GCWGC	4 cut(s)	275, 782, 791, 794
TspDTI	ATGAA	4 cut(s)	104, 198, 587, 741
TspRI	CASTG	2 cut(s)	41, 469
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	3 cut(s)	115, 155, 398
XbaI	TCTAGA	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	3 cut(s)	152, 449, 765
ZrmI	AGTACT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.