Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

6789275 .. 6790260

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTAGCCACTCGATCACAAACACATTCCAAACAGAAAACTCAAACATCTCCGATTTCCAAATGAATTACTCCATCTTCCACTCCCCAAATTCTGATACATCCTCTGAGTTTTCTTGGGATGCTCTAGAATTTGGCAATACTTCTCTTCCTTTCAATGAAAACGACTCCGAGGAAATGCTTCTCTTTGGGATGCTATCCAAGGCCACCCAAGAAACTACCTCATTTGAAACAGAAACACACAACTCAGCTGCCTCATCCAACCCCATAAAGGAAGAAGAAGTGAGTTCCGATTCCACATCCGAAGAAGAAAACCCCAAAACCCCGAAGAAGGAGAAGTCCTACAGAGGCGTCAGAAGGCGGCCGTGGGGCAAATTCGCCGCCGAGATAAGAGACTCGACCAGACATGGCGTAAGAGTTTGGCTAGGAACATTTGACAGTGCTGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTGCCATGAGGGGCTCCGCCGCCGTTCTCAACTTTCCGGTGGAGAGAGTCCGGGAGTCTCTTCGTGATATGAACTGTGCTACTTCGGATTTGGACGGGGGGTGTTCGCCGGTGGTGGCGCTGAAACGAAAGCACTCGATGAGAAGGAAATTGGGGAACAAGAAGAGTAGAATGGAGAGAGATGTGAGGTTAGAGAATGTGGTGGTGTTCGAAGATTTAGGAGCAGATTACTTGGAACAACTTTTGAGTTCATCTGAAAGCACTAGTACTACTACTGCTGCTGCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

256

Amino Acids

28.57

Weight (kDa)

5.11

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	114 - 165	6.2e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	361, 381, 450, 453, 474, 495, 498
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	3 cut(s)	91, 131, 374
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	271, 331
AgsI	TTSAA	2 cut(s)	157, 230
AhlI	ACTAGT	1 cut(s)	740
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	2 cut(s)	387, 540
AoxI	GGCC	3 cut(s)	204, 362, 459
ApeKI	GCWGC	3 cut(s)	251, 755, 758
ApoI	RAATTY	3 cut(s)	91, 131, 374
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	598
AsuC2I	CCSGG	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	238, 742, 745
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	349, 485
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	2 cut(s)	387, 540
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	3 cut(s)	128, 425, 741
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	9 cut(s)	252, 362, 381, 450, 453, 474, 498, 756, 759
BlsI	GCNGC	9 cut(s)	253, 363, 382, 451, 454, 475, 499, 757, 760
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	112, 183
Bpu14I	TTCGAA	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	171, 201, 365
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 331
Bse118I	RCCGGY	1 cut(s)	586
BseDI	CCNNGG	3 cut(s)	171, 201, 365
BseGI	GGATG	5 cut(s)	101, 127, 198, 257, 299
BseLI	CCNNNNNNNGG	2 cut(s)	271, 331
BseMII	CTCAG	2 cut(s)	99, 261
BseX3I	CGGCCG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	238, 742, 745
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	206, 364, 461
BsiEI	CGRYCG	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	515, 529, 587
BslI	CCNNNNNNNGG	2 cut(s)	271, 331
BsmAI	GTCTC	2 cut(s)	387, 540
BsnI	GGCC	3 cut(s)	206, 364, 461
Bsp119I	TTCGAA	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	15, 466
BspACI	CCGC	7 cut(s)	361, 381, 450, 453, 474, 495, 498
BspANI	GGCC	3 cut(s)	206, 364, 461
BspCNI	CTCAG	2 cut(s)	100, 260
BspLI	GGNNCC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	3 cut(s)	171, 201, 365
BssMI	GATC	2 cut(s)	15, 466
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	440, 554
Bst6I	CTCTTC	3 cut(s)	153, 543, 635
BstACI	GRCGYC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	687
BstDEI	CTNAG	2 cut(s)	108, 247
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	5 cut(s)	101, 127, 198, 257, 299
BstH2I	RGCGCY	1 cut(s)	599
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	2 cut(s)	18, 469
BstMAI	GTCTC	2 cut(s)	387, 540
BstMBI	GATC	2 cut(s)	15, 466
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 458, 479
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	3 cut(s)	238, 742, 745
BstZI	CGGCCG	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	206, 364, 461
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	5 cut(s)	101, 127, 198, 257, 299
BtsIMutI	CAGTG	1 cut(s)	445
CfoI	GCGC	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	586
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	744
CviAII	CATG	2 cut(s)	407, 484
CviJI	RGCY	9 cut(s)	9, 206, 251, 364, 424, 449, 461, 473, 492
CviKI_1	RGCY	9 cut(s)	9, 206, 251, 364, 424, 449, 461, 473, 492
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	2 cut(s)	108, 247
DpnI	GATC	2 cut(s)	17, 468
DpnII	GATC	2 cut(s)	15, 466
EaeI	YGGCCR	1 cut(s)	362
EagI	CGGCCG	1 cut(s)	362
Eam1104I	CTCTTC	3 cut(s)	153, 543, 635
EarI	CTCTTC	3 cut(s)	153, 543, 635
EciI	GGCGGA	1 cut(s)	484
EclXI	CGGCCG	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	494
Eco52I	CGGCCG	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	410, 487
FaiI	YATR	4 cut(s)	269, 408, 485, 548
FatI	CATG	2 cut(s)	406, 483
Fnu4HI	GCNGC	9 cut(s)	252, 362, 381, 450, 453, 474, 498, 756, 759
FokI	GGATG	5 cut(s)	88, 134, 205, 244, 286
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	9 cut(s)	252, 362, 381, 450, 453, 474, 498, 756, 759
FspBI	CTAG	3 cut(s)	128, 425, 741
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	9 cut(s)	252, 362, 381, 450, 453, 474, 498, 756, 759
HaeII	RGCGCY	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	206, 364, 461
HapII	CCGG	3 cut(s)	515, 529, 587
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	598
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	410, 487
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HinfI	GANTC	5 cut(s)	167, 293, 395, 525, 533
HpaII	CCGG	3 cut(s)	515, 529, 587
Hpy188I	TCNGA	9 cut(s)	55, 97, 109, 172, 292, 304, 356, 565, 733
Hpy188III	TCNNGA	2 cut(s)	128, 542
HpyAV	CCTTC	3 cut(s)	325, 351, 615
HpyCH4III	ACNGT	2 cut(s)	440, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 458, 479
HpyF3I	CTNAG	2 cut(s)	108, 247
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	410, 487
HspAI	GCGC	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	15, 466
LmnI	GCTCC	2 cut(s)	497, 698
LpnPI	CCDG	4 cut(s)	415, 528, 542, 600
Lsp1109I	GCAGC	3 cut(s)	238, 742, 745
LweI	GCATC	2 cut(s)	112, 183
MaeI	CTAG	3 cut(s)	128, 425, 741
MalI	GATC	2 cut(s)	17, 468
MboI	GATC	2 cut(s)	15, 466
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	6 cut(s)	67, 91, 131, 374, 626, 763
MlyI	GAGTC	4 cut(s)	161, 389, 534, 542
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	7 cut(s)	115, 166, 232, 265, 341, 480, 657
MroXI	GAANNNNTTC	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	3 cut(s)	515, 529, 587
MspR9I	CCNGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	449, 458, 479
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	2 cut(s)	15, 466
NlaIII	CATG	2 cut(s)	410, 487
NlaIV	GGNNCC	1 cut(s)	493
NmeAIII	GCCGAG	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	9 cut(s)	253, 363, 382, 451, 454, 475, 499, 757, 760
PleI	GAGTC	4 cut(s)	161, 389, 533, 541
PpsI	GAGTC	4 cut(s)	161, 389, 533, 541
PspN4I	GGNNCC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
SatI	GCNGC	9 cut(s)	252, 362, 381, 450, 453, 474, 498, 756, 759
Sau3AI	GATC	2 cut(s)	15, 466
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	4 cut(s)	161, 389, 534, 542
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	3 cut(s)	224, 253, 668
SfaNI	GCATC	2 cut(s)	112, 183
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	687
SgrAI	CRCCGGYG	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	740
Sse9I	AATT	6 cut(s)	67, 91, 131, 374, 626, 763
SsiI	CCGC	7 cut(s)	361, 381, 450, 453, 474, 495, 498
SspMI	CTAG	3 cut(s)	128, 425, 741
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	440, 554
TaqI	TCGA	4 cut(s)	14, 398, 614, 687
TasI	AATT	6 cut(s)	67, 91, 131, 374, 626, 763
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	6 cut(s)	364, 383, 452, 455, 476, 500
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	3 cut(s)	251, 755, 758
TspDTI	ATGAA	4 cut(s)	80, 174, 563, 717
TspRI	CASTG	1 cut(s)	445
XapI	RAATTY	3 cut(s)	91, 131, 374
XbaI	TCTAGA	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	128, 425, 741
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.