Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

19977428 .. 19978117

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1213100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATTACTCTACTTTTGATTCCCCAAATTCCAATTTGTCACCTGAATCTTCGTTTGGATCATCATTTTCTTGGGATGATGGTCTTAAATTTGGCAACAATTCACTTCCTTTCAATGAAAATGATTCGGAAGAAATGCTTCTCTACGGTCTGATTTCCGAGGGCACCCAAGAAATCACATCAAGCGTCTCTGTTTTTGCAAACCCAATTAAAGAAGAGGAGGTGAGCTCCGCATCTGAAGAAGAAAACCCGAAAAAGGAAAAGTCCTACAGAGGGGTTCGGAGGCGGCCGTGGGGCAAGTTTGCTGCAGAAATAAGAGACTCCACTAGACATGGCATAAGGGTGTGGCTAGGCACATTTGACAGTGCTGAAGCCGCAGCTCTTGCCTATGATCAAGCTGCCTTTTCCATGCGAGGCTCTGCGGCGGTTCTCAATTTTCCAGTTGAAAGAGTCCGCAAATCGCTTAGGGACATCAATTATGGTACCTCAGATTTGGAAGGTTGTTCGCCGGTGGTGGCGCTTAAGCGAAAGCACTCCATGAGAAGGAAAACTGGGAACACGAAAAGTAAAGTGGACAGAGATGTGAGGATAGAGAATGTGGTGGTGTTTGAAGATTTGGGAATCGATTACTTGGAAGAACTGTTAAATTCATCCGAGAGTACAAGTACTAATGCCACTCCTAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

25.56

Weight (kDa)

5.09

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	89 - 140	4.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	2 cut(s)	164, 482
AciI	CCGC	6 cut(s)	231, 286, 375, 422, 425, 454
AclWI	GGATC	1 cut(s)	67
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	3 cut(s)	28, 89, 646
AcuI	CTGAAG	2 cut(s)	258, 390
AfaI	GTAC	3 cut(s)	484, 661, 667
AfiI	CCNNNNNNNGG	3 cut(s)	256, 273, 543
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	115, 446, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	3 cut(s)	228, 380, 398
AluI	AGCT	3 cut(s)	228, 380, 398
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	2 cut(s)	193, 312
AlwI	GGATC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	305, 377, 398
ApoI	RAATTY	3 cut(s)	28, 89, 646
Asp700I	GAANNNNTTC	1 cut(s)	138
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	520
AsuHPI	GGTGA	2 cut(s)	33, 235
BaeGI	GKGCMC	1 cut(s)	167
BanI	GGYRCC	2 cut(s)	164, 482
BanII	GRGCYC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	292, 385, 389
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	274
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	193, 312
BfaI	CTAG	2 cut(s)	327, 350
BfmI	CTRYAG	2 cut(s)	268, 306
BfoI	RGCGCY	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	521
BisI	GCNGC	6 cut(s)	287, 306, 375, 378, 399, 423
BlsI	GCNGC	6 cut(s)	288, 307, 376, 379, 400, 424
BmcAI	AGTACT	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	166, 484
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
Bpu10I	CCTNAGC	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	159, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 273, 543
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	440, 556
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	2 cut(s)	159, 290
BseGI	GGATG	2 cut(s)	82, 650
BseLI	CCNNNNNNNGG	3 cut(s)	256, 273, 543
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	440, 556
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	167
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	292, 385, 389
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	2 cut(s)	164, 482
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	3 cut(s)	256, 273, 543
BsmAI	GTCTC	2 cut(s)	193, 312
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	167, 230
Bsp143I	GATC	2 cut(s)	59, 391
BspACI	CCGC	6 cut(s)	231, 286, 375, 422, 425, 454
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	500
BspDI	ATCGAT	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	166, 484
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	1 cut(s)	67
BspT107I	GGYRCC	2 cut(s)	164, 482
BspTI	CTTAAG	1 cut(s)	521
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	2 cut(s)	440, 556
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	159, 290
BssMI	GATC	2 cut(s)	59, 391
Bst4CI	ACNGT	3 cut(s)	149, 365, 642
Bst6I	CTCTTC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstDEI	CTNAG	2 cut(s)	464, 487
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	82, 650
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	2 cut(s)	62, 394
BstMAI	GTCTC	2 cut(s)	193, 312
BstMBI	GATC	2 cut(s)	59, 391
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstSFI	CTRYAG	2 cut(s)	268, 306
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	292, 385, 389
BstZI	CGGCCG	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	82, 650
BtsIMutI	CAGTG	1 cut(s)	370
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	508
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	483, 660, 666
CviAII	CATG	3 cut(s)	332, 409, 538
CviJI	RGCY	7 cut(s)	228, 289, 349, 374, 380, 398, 417
CviKI_1	RGCY	7 cut(s)	228, 289, 349, 374, 380, 398, 417
CviQI	GTAC	3 cut(s)	483, 660, 666
DdeI	CTNAG	2 cut(s)	464, 487
DpnI	GATC	2 cut(s)	61, 393
DpnII	GATC	2 cut(s)	59, 391
EaeI	YGGCCR	1 cut(s)	287
EagI	CGGCCG	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	2 cut(s)	258, 390
EcoICRI	GAGCTC	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	3 cut(s)	335, 412, 541
FaiI	YATR	6 cut(s)	333, 338, 390, 410, 480, 539
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	3 cut(s)	331, 408, 537
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	6 cut(s)	287, 306, 375, 378, 399, 423
FokI	GGATG	2 cut(s)	89, 637
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	6 cut(s)	287, 306, 375, 378, 399, 423
FspBI	CTAG	2 cut(s)	327, 350
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	6 cut(s)	287, 306, 375, 378, 399, 423
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	509
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	335, 412, 541
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HinfI	GANTC	6 cut(s)	20, 47, 125, 320, 450, 621
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	2 cut(s)	33, 235
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	7 cut(s)	130, 153, 160, 238, 282, 490, 655
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	2 cut(s)	491, 537
HpyCH4III	ACNGT	3 cut(s)	149, 365, 642
HpyCH4V	TGCA	2 cut(s)	200, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
HpyF3I	CTNAG	2 cut(s)	464, 487
Hsp92II	CATG	3 cut(s)	335, 412, 541
HspAI	GCGC	1 cut(s)	518
KpnI	GGTACC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	2 cut(s)	59, 391
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	57, 453, 522, 537
Lsp1109I	GCAGC	3 cut(s)	292, 385, 389
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	327, 350
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	2 cut(s)	61, 393
MboI	GATC	2 cut(s)	59, 391
MboII	GAAGA	7 cut(s)	42, 143, 227, 251, 254, 623, 647
MhlI	GDGCHC	2 cut(s)	167, 230
MlyI	GAGTC	2 cut(s)	314, 459
MnlI	CCTC	8 cut(s)	154, 211, 214, 266, 276, 407, 496, 579
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	4 cut(s)	87, 210, 522, 644
MslI	CAYNNNNRTG	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	521
MspI	CCGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NdeII	GATC	2 cut(s)	59, 391
NlaIII	CATG	3 cut(s)	335, 412, 541
NlaIV	GGNNCC	2 cut(s)	166, 484
NmuCI	GTSAC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	20, 47, 125, 621
PkrI	GCNGC	6 cut(s)	288, 307, 376, 379, 400, 424
PleI	GAGTC	2 cut(s)	314, 458
PpsI	GAGTC	2 cut(s)	314, 458
Psp124BI	GAGCTC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	166, 484
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	3 cut(s)	484, 661, 667
RsaNI	GTAC	3 cut(s)	483, 660, 666
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	87, 210, 522, 644
SatI	GCNGC	6 cut(s)	287, 306, 375, 378, 399, 423
Sau3AI	GATC	2 cut(s)	59, 391
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	2 cut(s)	314, 459
SduI	GDGCHC	2 cut(s)	167, 230
SetI	ASST	7 cut(s)	46, 225, 230, 382, 400, 488, 502
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	2 cut(s)	268, 306
SgrAI	CRCCGGYG	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SsiI	CCGC	6 cut(s)	231, 286, 375, 422, 425, 454
SspMI	CTAG	2 cut(s)	327, 350
SstI	GAGCTC	1 cut(s)	230
TaaI	ACNGT	3 cut(s)	149, 365, 642
TaqI	TCGA	1 cut(s)	624
TatI	WGTACW	2 cut(s)	659, 665
TauI	GCSGC	3 cut(s)	289, 377, 425
TfiI	GAWTC	4 cut(s)	20, 47, 125, 621
Tru1I	TTAA	4 cut(s)	87, 210, 522, 644
Tru9I	TTAA	4 cut(s)	87, 210, 522, 644
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	3 cut(s)	305, 377, 398
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	3 cut(s)	17, 132, 639
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	521
XapI	RAATTY	3 cut(s)	28, 89, 646
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	2 cut(s)	327, 350
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.