Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013083

Physical Location & Seq

Genomic Coordinates Forward (+)

40379825 .. 40383630

Gene Structure 3806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0339300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCAGTTCTCCCAGACGAGCTCTGGAGGCGAGTCTTCGAAATCGGCGGGTTCAGCTACAAAGACCTCTGCTGTGTATCTATCACCTGCAGGCGCTTCCGCCGATTATCCGATGAGGACCATCTCTGGTCGCACCTCCTCTCCTCGGATTTCCCCCTTGTCGCTCCTCATCCCTCTTCTTCCTCAGTCACCTCTAAATCTCTCTATAAACTCAGGTTTGAGAGAGATAGGGATAAGAAAATAGCGGCCCATCAACGAGCGCTGTTGCGGAAGGAGAGCCAGATTATTGAACATTTAAGAAAGCTCCGGGACATAGAGAGCCGATTGGCCCAAGAGACCCACAAAATGCGAGCGACTCGTGTTGACCTCTCCAATTTTCACCAGGTCAGGCAAGCTTCACTAGCATTGAATGTCTGGCAGCCAGAGATAATCAGGGGCCGACAAAAACAAATAGTGGAGCAATGTGTTGTACCGACTGAGTCTCGGCTCCATGCCCTTGAAATGGAGCTTAGGCTCTGCAAACAGCAGATTTCAGGGTTAGAAAAGGCGTATAAAGATGAGAAGCAAAGGCTTGGTTTGGCTGAAGAAGAGTTGCAATCGATGAGATATCACCCTTTACGAGATCATAGGCCACTGAGTTCGGGGGACGCTCAATGTACTAGCAAAAGCAAAAAGTTGAAAAGATTTCATGGTCAAGGAAGGAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

236

Amino Acids

27.66

Weight (kDa)

9.81

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 46	3.1e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23240
fragaria_vesca	FvH4_4g03470
malus_domestica	MD13G1213100.v1.1 MD16G1216900.v1.1
prunus_persica	Prupe.1G037900_v2.0.a1
pyrus_communis	pycom13g18490 pycom16g18120
rosa_chinensis	RchiOBHm_Chr4g0392501
rosa_laevigata	RLG00000009802
rosa_multiflora	Rmu_sc0016640.1_g000010 Rmu_sc0021954.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337740
rosa_rugosa	Rorug03G0339300
rosa_samantha	Rh4AG043300 Rh4BG038200 Rh4CG046200 Rh4DG040400
rosa_wichuraiana	Rw4G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AciI	CCGC	4 cut(s)	48, 100, 245, 268
AcuI	CTGAAG	1 cut(s)	603
AfaI	GTAC	2 cut(s)	471, 658
AfeI	AGCGCT	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	145, 502
AgsI	TTSAA	4 cut(s)	290, 409, 500, 679
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	5 cut(s)	22, 57, 304, 395, 508
AluI	AGCT	5 cut(s)	22, 57, 304, 395, 508
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	329, 486
Aor51HI	AGCGCT	1 cut(s)	261
AoxI	GGCC	4 cut(s)	246, 327, 436, 629
ApeKI	GCWGC	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	96, 262
AspS9I	GGNCC	4 cut(s)	118, 247, 328, 436
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	76, 181, 371, 602
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	2 cut(s)	129, 258
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	329, 486
BfaI	CTAG	2 cut(s)	401, 660
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	2 cut(s)	97, 263
BfuAI	ACCTGC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	246, 419
BlsI	GCNGC	2 cut(s)	247, 420
Bme1390I	CCNGG	2 cut(s)	308, 383
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	4 cut(s)	118, 247, 328, 436
BmiI	GGNNCC	2 cut(s)	437, 488
BmrFI	CCNGG	2 cut(s)	308, 383
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 502
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	145, 502
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	4 cut(s)	198, 226, 468, 626
BseRI	GAGGAG	3 cut(s)	128, 133, 156
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	4 cut(s)	248, 329, 438, 631
BshVI	ATCGAT	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	323, 659
BslI	CCNNNNNNNGG	2 cut(s)	145, 502
BsmAI	GTCTC	2 cut(s)	329, 486
BsmFI	GGGAC	2 cut(s)	323, 659
BsnI	GGCC	4 cut(s)	248, 329, 438, 631
Bso31I	GGTCTC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	622
BspACI	CCGC	4 cut(s)	48, 100, 245, 268
BspANI	GGCC	4 cut(s)	248, 329, 438, 631
BspCNI	CTCAG	4 cut(s)	197, 225, 469, 627
BspDI	ATCGAT	1 cut(s)	599
BspLI	GGNNCC	2 cut(s)	437, 488
BspMAI	CTGCAG	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	622
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	181, 582
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	92, 351, 393
BstDEI	CTNAG	5 cut(s)	184, 212, 477, 509, 635
BstF5I	GGATG	1 cut(s)	169
BstH2I	RGCGCY	2 cut(s)	97, 263
BstHHI	GCGC	2 cut(s)	96, 262
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	2 cut(s)	329, 486
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 54, 401
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	306, 381
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	248, 329, 438, 631
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	632
BveI	ACCTGC	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	92, 351, 393
CfoI	GCGC	2 cut(s)	96, 262
Cfr13I	GGNCC	4 cut(s)	118, 247, 328, 436
ClaI	ATCGAT	1 cut(s)	599
CseI	GACGC	1 cut(s)	656
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	470, 657
CviAII	CATG	2 cut(s)	491, 689
CviQI	GTAC	2 cut(s)	470, 657
DdeI	CTNAG	5 cut(s)	184, 212, 477, 509, 635
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
Eam1104I	CTCTTC	2 cut(s)	181, 582
EarI	CTCTTC	2 cut(s)	181, 582
EciI	GGCGGA	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	2 cut(s)	494, 692
FaiI	YATR	7 cut(s)	207, 314, 492, 552, 627, 690, 709
FaqI	GGGAC	2 cut(s)	323, 659
FatI	CATG	2 cut(s)	490, 688
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	246, 419
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	246, 419
FspBI	CTAG	2 cut(s)	401, 660
GlaI	GCGC	2 cut(s)	95, 261
GluI	GCNGC	2 cut(s)	246, 419
GsuI	CTGGAG	1 cut(s)	46
HaeII	RGCGCY	2 cut(s)	97, 263
HaeIII	GGCC	4 cut(s)	248, 329, 438, 631
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	2 cut(s)	96, 262
Hin1II	CATG	2 cut(s)	494, 692
Hin6I	GCGC	2 cut(s)	94, 260
HinP1I	GCGC	2 cut(s)	94, 260
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	3 cut(s)	33, 355, 479
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	4 cut(s)	76, 181, 371, 602
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	112, 148
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	265, 693
HpyCH4V	TGCA	3 cut(s)	90, 519, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 54, 401
HpyF3I	CTNAG	5 cut(s)	184, 212, 477, 509, 635
Hsp92II	CATG	2 cut(s)	494, 692
HspAI	GCGC	2 cut(s)	94, 260
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	5 cut(s)	169, 309, 457, 492, 505
Lsp1109I	GCAGC	1 cut(s)	430
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	2 cut(s)	401, 660
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	5 cut(s)	28, 168, 171, 596, 599
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	3 cut(s)	42, 349, 488
MseI	TTAA	1 cut(s)	296
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	308, 383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	28, 54, 401
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	2 cut(s)	494, 692
NlaIV	GGNNCC	2 cut(s)	437, 488
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	247, 420
PleI	GAGTC	3 cut(s)	41, 349, 487
PpsI	GAGTC	3 cut(s)	41, 349, 487
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	437, 488
PspPI	GGNCC	4 cut(s)	118, 247, 328, 436
PstI	CTGCAG	1 cut(s)	92
PsyI	GACNNNGTC	1 cut(s)	478
RsaI	GTAC	2 cut(s)	471, 658
RsaNI	GTAC	2 cut(s)	470, 657
SacI	GAGCTC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	246, 419
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	4 cut(s)	118, 247, 328, 436
SbfI	CCTGCAGG	1 cut(s)	92
SchI	GAGTC	3 cut(s)	42, 349, 488
ScrFI	CCNGG	2 cut(s)	308, 383
SdaI	CCTGCAGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	24
SexAI	ACCWGGT	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	118
Sse8387I	CCTGCAGG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	4 cut(s)	48, 100, 245, 268
SspMI	CTAG	2 cut(s)	401, 660
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	306, 381
TaqI	TCGA	2 cut(s)	39, 599
TasI	AATT	1 cut(s)	373
TatI	WGTACW	1 cut(s)	656
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	639
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	677
TspRI	CASTG	1 cut(s)	639
Tth111I	GACNNNGTC	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XspI	CTAG	2 cut(s)	401, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.