AT3G23580

Ribonucleotide reductase, small chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010822
Physical Location & Seq
Forward (+)
8459838 .. 8462815
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23580.1

Sequence Viewer

Length: 1026 bp
ATGGGTTCGCTTAAGGAAGGTCAAGGAAGAGACATGGAAGAAGGTGAATCAGAAGAGCCGCTTTTGATGGCTCAGAACCAGAGATTCACTATGTTCCCCATTAGGTACAAATCTATTTGGGAGATGTATAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAAGAGGTTGATCTTTCCACTGATGTGCAACAGTGGGAGGCCTTGACGGATTCAGAGAAACACTTTATCAGCCATATTCTGGCGTTTTTCGCAGCGTCAGATGGTATTGTTTTGGAGAATTTGGCTGCTAGATTCTTGAATGATGTCCAAGTTCCAGAGGCTCGTGCTTTCTATGGGTTTCAAATAGCCATGGAGAACATTCATTCAGAGATGTACAGCTTACTTCTGGAGACATTCATAAAGGACTCGAAGGAGAAGGATAGATTGTTCAATGCTATCGAGACCATTCCTTGTATATCCAAGAAGGCAAAATGGTGTTTAGATTGGATTCAAAGTCCTATGTCGTTTGCTGTGAGGCTGGTCGCTTTTGCATGTGTCGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATCTTCTGGCTAAAGAAGAGGGGTCTTATGCCGGGTTTGACCTTCTCAAACGAGCTTATATCGAGAGACGAGGGGCTCCACTGTGACTTTGCGTGTCTCTTGTACAGTTTGCTGCAGAAGCAGCTTCCATTGGAGAAAGTTTATCAAATTGTTCACGAGGCAGTGGAAATTGAGACAGAGTTTGTCTGCAAGGCTCTTCCATGTGATCTGATCGGAATGAACTCAAACCTCATGAGTCAATACATACAATTTGTCGCTGACCGTCTTCTGGTTACCTTGGGATGTGAAAGGACATACAAAGCAGAAAATCCATTTGACTGGATGGAGTTCATATCTCTGCAAGGAAAGACAAACTTCTTTGAGAAGAGAGTGGGAGAGTATCAGAAGGCATCAGTTATGTCGAACCTCCAAAATGGAAATCAGAACTACGAATTCACGACTGAAGAGGACTTTTGA

Protein Analysis

341

Amino Acids

39.37

Weight (kDa)

4.79

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuc_red_sm PF00268 28 - 294 2.9e-117 Ribonucleotide reductase, small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23580
fragaria_vesca FvH4_4g14370 FvH4_4g14370
malus_domestica MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis pycom13g15710 pycom16g15320
rosa_chinensis RchiOBHm_Chr4g0418551
rosa_laevigata RLG00000007854
rosa_multiflora Rmu_sc0000363.1_g000039
rosa_roxburghii Rroxscaffold_5G00361810
rosa_rugosa Rorug04G0154200 Rorug04G0154300
rosa_samantha Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana Rw4G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 150, 238, 576
AciI CCGC 1 cut(s) 59
AcsI RAATTY 2 cut(s) 277, 1001
AcuI CTGAAG 2 cut(s) 159, 180
AfaI GTAC 3 cut(s) 107, 374, 674
AfiI CCNNNNNNNGG 4 cut(s) 150, 238, 576, 838
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 4 cut(s) 298, 341, 430, 491
AleI CACNNNNGTG 1 cut(s) 182
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 4 cut(s) 378, 561, 625, 694
AluI AGCT 4 cut(s) 378, 561, 625, 694
Alw26I GTCTC 6 cut(s) 24, 383, 434, 630, 671, 737
AlwNI CAGNNNCTG 1 cut(s) 150
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 4 cut(s) 251, 284, 682, 691
ApoI RAATTY 2 cut(s) 277, 1001
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 648
BauI CACGAG 2 cut(s) 321, 725
BbsI GAAGAC 1 cut(s) 827
BbvI GCAGC 4 cut(s) 263, 271, 669, 703
BccI CCATC 4 cut(s) 61, 254, 578, 886
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 6 cut(s) 24, 383, 434, 630, 671, 737
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 683
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 5 cut(s) 59, 252, 285, 683, 692
BlsI GCNGC 5 cut(s) 60, 253, 286, 684, 693
Bme1390I CCNGG 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 647
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 968
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 348, 846
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 238, 576, 838
Bse1I ACTGG 2 cut(s) 144, 893
BseDI CCNNGG 2 cut(s) 348, 846
BseGI GGATG 2 cut(s) 857, 897
BseLI CCNNNNNNNGG 4 cut(s) 150, 238, 576, 838
BseMII CTCAG 2 cut(s) 86, 567
BseNI ACTGG 2 cut(s) 144, 893
BseXI GCAGC 4 cut(s) 263, 271, 669, 703
BshFI GGCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 4 cut(s) 150, 238, 576, 838
BsmAI GTCTC 6 cut(s) 24, 383, 434, 630, 671, 737
BsmBI CGTCTC 1 cut(s) 630
BsnI GGCC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 648
Bsp1407I TGTACA 2 cut(s) 372, 672
Bsp143I GATC 3 cut(s) 169, 775, 780
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 85, 566
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 647
BspMAI CTGCAG 1 cut(s) 687
BspQI GCTCTTC 2 cut(s) 48, 771
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 434
BsrGI TGTACA 2 cut(s) 372, 672
BsrI ACTGG 2 cut(s) 144, 893
BssECI CCNNGG 2 cut(s) 348, 846
BssMI GATC 3 cut(s) 169, 775, 780
BssSI CACGAG 2 cut(s) 321, 725
BssT1I CCWWGG 2 cut(s) 348, 846
Bst2BI CACGAG 2 cut(s) 321, 725
Bst4CI ACNGT 4 cut(s) 192, 653, 677, 833
Bst6I CTCTTC 7 cut(s) 22, 48, 156, 581, 771, 929, 1008
BstAFI CTTAAG 1 cut(s) 11
BstAUI TGTACA 2 cut(s) 372, 672
BstDEI CTNAG 2 cut(s) 72, 553
BstDSI CCRYGG 1 cut(s) 348
BstEII GGTNACC 1 cut(s) 841
BstF5I GGATG 2 cut(s) 857, 897
BstKTI GATC 3 cut(s) 172, 778, 783
BstMAI GTCTC 6 cut(s) 24, 383, 434, 630, 671, 737
BstMBI GATC 3 cut(s) 169, 775, 780
BstMWI GCNNNNNNNGC 3 cut(s) 248, 688, 691
BstNSI RCATGY 1 cut(s) 534
BstPI GGTNACC 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 683
BstV1I GCAGC 4 cut(s) 263, 271, 669, 703
BstV2I GAAGAC 1 cut(s) 827
BstXI CCANNNNNNTGG 1 cut(s) 888
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 857, 897
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 4 cut(s) 177, 197, 649, 738
CaiI CAGNNNCTG 1 cut(s) 150
CciI TCATGA 1 cut(s) 801
CseI GACGC 1 cut(s) 243
Csp6I GTAC 3 cut(s) 106, 373, 673
CviAII CATG 5 cut(s) 34, 349, 531, 771, 802
CviQI GTAC 3 cut(s) 106, 373, 673
DdeI CTNAG 2 cut(s) 72, 553
DpnI GATC 3 cut(s) 171, 777, 782
DpnII GATC 3 cut(s) 169, 775, 780
Eam1104I CTCTTC 7 cut(s) 22, 48, 156, 581, 771, 929, 1008
EarI CTCTTC 7 cut(s) 22, 48, 156, 581, 771, 929, 1008
Eco130I CCWWGG 2 cut(s) 348, 846
Eco147I AGGCCT 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 434
Eco57I CTGAAG 2 cut(s) 159, 180
Eco91I GGTNACC 1 cut(s) 841
EcoO65I GGTNACC 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 1001
EcoT14I CCWWGG 2 cut(s) 348, 846
EcoT38I GRGCYC 1 cut(s) 648
ErhI CCWWGG 2 cut(s) 348, 846
Esp3I CGTCTC 1 cut(s) 630
FaeI CATG 5 cut(s) 37, 352, 534, 774, 805
FalI AAGNNNNNCTT 4 cut(s) 45, 77, 908, 940
FatI CATG 5 cut(s) 33, 348, 530, 770, 801
Fnu4HI GCNGC 5 cut(s) 59, 252, 285, 683, 692
FokI GGATG 2 cut(s) 864, 904
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 5 cut(s) 59, 252, 285, 683, 692
FspBI CTAG 1 cut(s) 288
GluI GCNGC 5 cut(s) 59, 252, 285, 683, 692
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 602
HgaI GACGC 1 cut(s) 243
Hin1II CATG 5 cut(s) 37, 352, 534, 774, 805
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 8 cut(s) 47, 84, 209, 291, 404, 487, 543, 805
HpaII CCGG 1 cut(s) 602
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 9 cut(s) 52, 75, 214, 259, 367, 780, 785, 954, 993
Hpy8I GTNNAC 1 cut(s) 724
HpyAV CCTTC 9 cut(s) 11, 35, 127, 403, 409, 457, 533, 622, 949
HpyCH4III ACNGT 4 cut(s) 192, 653, 677, 833
HpyCH4V TGCA 5 cut(s) 187, 530, 685, 759, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 688, 691
HpyF3I CTNAG 2 cut(s) 72, 553
Hsp92II CATG 5 cut(s) 37, 352, 534, 774, 805
Kzo9I GATC 3 cut(s) 169, 775, 780
LguI GCTCTTC 2 cut(s) 48, 771
LmnI GCTCC 1 cut(s) 651
Lsp1109I GCAGC 4 cut(s) 263, 271, 669, 703
LweI GCATC 1 cut(s) 968
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 653, 841
MalI GATC 3 cut(s) 171, 777, 782
MboI GATC 3 cut(s) 169, 775, 780
MhlI GDGCHC 1 cut(s) 648
MluCI AATT 5 cut(s) 277, 717, 738, 818, 1001
MlyI GAGTC 2 cut(s) 398, 814
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 602
MspR9I CCNGG 1 cut(s) 603
MwoI GCNNNNNNNGC 3 cut(s) 248, 688, 691
NciI CCSGG 1 cut(s) 603
NcoI CCATGG 1 cut(s) 348
NdeII GATC 3 cut(s) 169, 775, 780
NlaIII CATG 5 cut(s) 37, 352, 534, 774, 805
NlaIV GGNNCC 1 cut(s) 647
NmuCI GTSAC 1 cut(s) 653
NspI RCATGY 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 182
PagI TCATGA 1 cut(s) 801
PceI AGGCCT 1 cut(s) 200
PciSI GCTCTTC 2 cut(s) 48, 771
PfeI GAWTC 6 cut(s) 47, 84, 209, 291, 487, 543
PflMI CCANNNNNTGG 3 cut(s) 150, 238, 576
PkrI GCNGC 5 cut(s) 60, 253, 286, 684, 693
PleI GAGTC 2 cut(s) 398, 813
PpsI GAGTC 2 cut(s) 398, 813
PspEI GGTNACC 1 cut(s) 841
PspN4I GGNNCC 1 cut(s) 647
PstI CTGCAG 1 cut(s) 687
PstNI CAGNNNCTG 1 cut(s) 150
RsaI GTAC 3 cut(s) 107, 374, 674
RsaNI GTAC 3 cut(s) 106, 373, 673
RseI CAYNNNNRTG 1 cut(s) 182
SapI GCTCTTC 2 cut(s) 48, 771
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 5 cut(s) 59, 252, 285, 683, 692
Sau3AI GATC 3 cut(s) 169, 775, 780
SchI GAGTC 2 cut(s) 398, 814
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 1 cut(s) 648
SfaNI GCATC 1 cut(s) 968
SfcI CTRYAG 1 cut(s) 683
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 5 cut(s) 277, 717, 738, 818, 1001
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 288
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 2 cut(s) 348, 846
TaaI ACNGT 4 cut(s) 192, 653, 677, 833
TaqI TCGA 5 cut(s) 407, 438, 537, 632, 971
TasI AATT 5 cut(s) 277, 717, 738, 818, 1001
TatI WGTACW 2 cut(s) 372, 672
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 6 cut(s) 47, 84, 209, 291, 487, 543
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 4 cut(s) 184, 197, 656, 738
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 4 cut(s) 251, 284, 682, 691
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 4 cut(s) 350, 385, 803, 889
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 4 cut(s) 184, 197, 656, 738
Van91I CCANNNNNTGG 3 cut(s) 150, 238, 576
Vha464I CTTAAG 1 cut(s) 11
XapI RAATTY 2 cut(s) 277, 1001
XceI RCATGY 1 cut(s) 534
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.