Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

15215679 .. 15219853

Gene Structure 4175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1182000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGGTTCTCTGGAAAATGGGACGGAGAGGGGAAATGGAGAAGAACAAGTAACAGAGCAGGAGGAGGAGCCGATATTAATGGAGCAGACGCAGAGGTTTTGTATGTTTCCTGTTCGTTACAAGCAGGTGTGGGAGATGTACAAGAAGGCCGAGGCCAGTTTCTGGACTGCTGAGGAGGTTGACCTCTCCCAGGATGTACAACAGTGGGATGCTTTGTCCGACTCTGAAAGACACTTTATAAGCCATGTCCTTGCATTTTTTGCTGCATCTGATGGGATAGTTTTGGAGAATTTGGCTGCAAGATTCTTAACTGATGTTCAAATTCCTGAGGCTCGGGCATTCTATGGATTTCAACTTGCAATGGAGAATATACATTCAGAGATGTACAGCTTGCTTTTGGAGACATACATCAAGGATTCCACGGAGAAGCACAGATTGTTCAATGCAATTGAAAGCATTCCTTGTGTGTCTAGGAAGGCTAAGTGGGCTTTGGATTGGATACACAGTTCAAATTCATTTGCGGAGAGACTTGTTGCTTTTGCATGTGTTGAAGGAATCTTCTTCTCGGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCCGGGTTGACATTCTCAAACGAGCTTATATCTAGAGATGAGGGTCTTCACTGTGATTTTGCTTGCCTTTTGTACGGTTTGTTGCGGAAGCAACTAAATTGGGAAAAAGTTCATGGAATTATACATGAAGCTGTTGAGATTGAGACTGAATTTGTTTGTGAGGCCCTCCCATGCGCATTGATTGGCATGAACTCAGATCTTATGAGCCAGTACATAAAATTTGTTGCTGATCGACTCTTGGTTGCATTAGGGTGCCAGAGGAAGTACAATGTGGACAATCCTTTTGACTGGATGGAGTTTATTTCTTTGCAAGGAAAGACGAACTTTTTCGAGAGAAGGGTTGGTGACTATCAAAAAGCATCTGTTATGTCGGGCCTCCAAGATGGTGGCAGAAATTTCATCTTCAAGCTGGACGCCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

346

Amino Acids

39.71

Weight (kDa)

4.91

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	32 - 298	7.4e-116	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	115
Acc16I	TGCGCA	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	864
AccB7I	CCANNNNNTGG	2 cut(s)	162, 588
AciI	CCGC	2 cut(s)	521, 697
AcsI	RAATTY	6 cut(s)	289, 321, 511, 761, 830, 1006
AcyI	GRCGYC	1 cut(s)	1026
AfaI	GTAC	6 cut(s)	140, 198, 386, 686, 824, 878
AfiI	CCNNNNNNNGG	3 cut(s)	162, 190, 588
AgsI	TTSAA	7 cut(s)	320, 353, 442, 452, 510, 551, 1018
AjnI	CCWGG	1 cut(s)	189
AloI	GAACNNNNNNTCC	2 cut(s)	490, 522
AluBI	AGCT	5 cut(s)	390, 573, 637, 743, 1021
AluI	AGCT	5 cut(s)	390, 573, 637, 743, 1021
Alw26I	GTCTC	3 cut(s)	395, 520, 749
AlwNI	CAGNNNCTG	1 cut(s)	162
Ama87I	CYCGRG	3 cut(s)	333, 565, 614
AoxI	GGCC	4 cut(s)	147, 153, 774, 985
ApeKI	GCWGC	2 cut(s)	263, 296
ApoI	RAATTY	6 cut(s)	289, 321, 511, 761, 830, 1006
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AseI	ATTAAT	1 cut(s)	77
Asp700I	GAANNNNTTC	3 cut(s)	456, 720, 938
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	2 cut(s)	775, 985
AsuC2I	CCSGG	2 cut(s)	615, 616
AsuHPI	GGTGA	1 cut(s)	968
AvaI	CYCGRG	3 cut(s)	333, 565, 614
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	864
BbsI	GAAGAC	1 cut(s)	650
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	250, 283
BccI	CCATC	3 cut(s)	266, 898, 989
BciT130I	CCWGG	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	492
BcnI	CCSGG	2 cut(s)	615, 616
BcoDI	GTCTC	3 cut(s)	395, 520, 749
BfaI	CTAG	3 cut(s)	471, 645, 1036
BfuAI	ACCTGC	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	2 cut(s)	264, 297
BlsI	GCNGC	2 cut(s)	265, 298
Bme1390I	CCNGG	3 cut(s)	191, 615, 616
BmeT110I	CYCGRG	3 cut(s)	333, 565, 614
BmgT120I	GGNCC	2 cut(s)	775, 985
BmiI	GGNNCC	2 cut(s)	69, 866
BmrFI	CCNGG	3 cut(s)	191, 615, 616
BmsI	GCATC	3 cut(s)	199, 275, 980
BpiI	GAAGAC	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	615, 616
BsaHI	GRCGYC	1 cut(s)	1026
BsaJI	CCNNGG	4 cut(s)	150, 189, 420, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 190, 588
Bse1I	ACTGG	3 cut(s)	156, 820, 905
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	4 cut(s)	150, 189, 420, 614
BseGI	GGATG	3 cut(s)	199, 214, 909
BseLI	CCNNNNNNNGG	3 cut(s)	162, 190, 588
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	162, 318, 819
BseNI	ACTGG	3 cut(s)	156, 820, 905
BseRI	GAGGAG	3 cut(s)	77, 80, 188
BseXI	GCAGC	2 cut(s)	250, 283
BshFI	GGCC	4 cut(s)	149, 155, 776, 987
BshNI	GGYRCC	1 cut(s)	864
BsiHKCI	CYCGRG	3 cut(s)	333, 565, 614
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	2 cut(s)	34, 618
BslI	CCNNNNNNNGG	3 cut(s)	162, 190, 588
BsmAI	GTCTC	3 cut(s)	395, 520, 749
BsmFI	GGGAC	2 cut(s)	34, 618
BsmI	GAATGC	2 cut(s)	338, 456
BsnI	GGCC	4 cut(s)	149, 155, 776, 987
BsoBI	CYCGRG	3 cut(s)	333, 565, 614
Bsp1407I	TGTACA	3 cut(s)	138, 196, 384
Bsp143I	GATC	2 cut(s)	808, 841
BspACI	CCGC	2 cut(s)	521, 697
BspANI	GGCC	4 cut(s)	149, 155, 776, 987
BspCNI	CTCAG	3 cut(s)	163, 319, 818
BspLI	GGNNCC	2 cut(s)	69, 866
BspMI	ACCTGC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	864
BsrDI	GCAATG	1 cut(s)	366
BsrGI	TGTACA	3 cut(s)	138, 196, 384
BsrI	ACTGG	3 cut(s)	156, 820, 905
BssECI	CCNNGG	4 cut(s)	150, 189, 420, 614
BssMI	GATC	2 cut(s)	808, 841
BssNI	GRCGYC	1 cut(s)	1026
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	4 cut(s)	204, 506, 665, 689
BstACI	GRCGYC	1 cut(s)	1026
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	3 cut(s)	138, 196, 384
BstC8I	GCNNGC	2 cut(s)	392, 676
BstDEI	CTNAG	4 cut(s)	171, 327, 480, 805
BstDSI	CCRYGG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	199, 214, 909
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	2 cut(s)	811, 844
BstMAI	GTCTC	3 cut(s)	395, 520, 749
BstMBI	GATC	2 cut(s)	808, 841
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 485
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	3 cut(s)	189, 613, 614
BstV1I	GCAGC	2 cut(s)	250, 283
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	1 cut(s)	808
BstXI	CCANNNNNNTGG	1 cut(s)	998
BstYI	RGATCY	1 cut(s)	808
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	149, 155, 776, 987
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	3 cut(s)	199, 214, 909
BtsIMutI	CAGTG	2 cut(s)	209, 661
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	392, 676
CaiI	CAGNNNCTG	1 cut(s)	162
CfoI	GCGC	1 cut(s)	788
Cfr13I	GGNCC	2 cut(s)	775, 985
Cfr9I	CCCGGG	1 cut(s)	614
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	6 cut(s)	139, 197, 385, 685, 823, 877
CviAII	CATG	6 cut(s)	245, 543, 725, 737, 783, 799
CviQI	GTAC	6 cut(s)	139, 197, 385, 685, 823, 877
DdeI	CTNAG	4 cut(s)	171, 327, 480, 805
DpnI	GATC	2 cut(s)	810, 843
DpnII	GATC	2 cut(s)	808, 841
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	3 cut(s)	333, 565, 614
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	775
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	6 cut(s)	248, 546, 728, 740, 786, 802
FalI	AAGNNNNNCTT	4 cut(s)	445, 477, 920, 952
FaqI	GGGAC	2 cut(s)	34, 618
FatI	CATG	6 cut(s)	244, 542, 724, 736, 782, 798
Fnu4HI	GCNGC	2 cut(s)	264, 297
FokI	GGATG	3 cut(s)	206, 221, 916
Fsp4HI	GCNGC	2 cut(s)	264, 297
FspAI	RTGCGCAY	1 cut(s)	787
FspBI	CTAG	3 cut(s)	471, 645, 1036
FspI	TGCGCA	1 cut(s)	787
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	2 cut(s)	264, 297
HaeIII	GGCC	4 cut(s)	149, 155, 776, 987
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	788
Hin1I	GRCGYC	1 cut(s)	1026
Hin1II	CATG	6 cut(s)	248, 546, 728, 740, 786, 802
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HincII	GTYRAC	2 cut(s)	181, 621
HindII	GTYRAC	2 cut(s)	181, 621
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	5 cut(s)	221, 303, 416, 555, 846
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	3 cut(s)	181, 621, 886
Hpy188I	TCNGA	5 cut(s)	220, 226, 271, 379, 808
Hpy188III	TCNNGA	6 cut(s)	11, 163, 326, 567, 645, 943
Hpy8I	GTNNAC	3 cut(s)	181, 621, 886
HpyAV	CCTTC	4 cut(s)	139, 469, 545, 942
HpyCH4III	ACNGT	4 cut(s)	204, 506, 665, 689
HpyCH4V	TGCA	8 cut(s)	254, 266, 299, 359, 446, 542, 857, 922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 485
HpyF3I	CTNAG	4 cut(s)	171, 327, 480, 805
Hsp92I	GRCGYC	1 cut(s)	1026
Hsp92II	CATG	6 cut(s)	248, 546, 728, 740, 786, 802
HspAI	GCGC	1 cut(s)	786
Kzo9I	GATC	2 cut(s)	808, 841
LmnI	GCTCC	2 cut(s)	67, 82
Lsp1109I	GCAGC	2 cut(s)	250, 283
LweI	GCATC	3 cut(s)	199, 275, 980
MaeI	CTAG	3 cut(s)	471, 645, 1036
MaeIII	GTNAC	3 cut(s)	49, 116, 956
MalI	GATC	2 cut(s)	810, 843
MboI	GATC	2 cut(s)	808, 841
MboII	GAAGA	5 cut(s)	53, 550, 553, 650, 1006
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	808
MluCI	AATT	9 cut(s)	289, 321, 447, 511, 709, 729, 761, 830, 1006
MlyI	GAGTC	2 cut(s)	215, 840
MmeI	TCCRAC	1 cut(s)	243
MroXI	GAANNNNTTC	3 cut(s)	456, 720, 938
MseI	TTAA	3 cut(s)	77, 308, 594
MslI	CAYNNNNRTG	1 cut(s)	862
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	3 cut(s)	191, 615, 616
MunI	CAATTG	1 cut(s)	447
Mva1269I	GAATGC	2 cut(s)	338, 456
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	260, 485
NciI	CCSGG	2 cut(s)	615, 616
NdeII	GATC	2 cut(s)	808, 841
NlaIII	CATG	6 cut(s)	248, 546, 728, 740, 786, 802
NlaIV	GGNNCC	2 cut(s)	69, 866
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	956
NsbI	TGCGCA	1 cut(s)	787
NspI	RCATGY	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	115
PctI	GAATGC	2 cut(s)	338, 456
PdmI	GAANNNNTTC	3 cut(s)	456, 720, 938
PfeI	GAWTC	3 cut(s)	303, 416, 555
PflMI	CCANNNNNTGG	2 cut(s)	162, 588
PkrI	GCNGC	2 cut(s)	265, 298
PleI	GAGTC	2 cut(s)	215, 840
PpsI	GAGTC	2 cut(s)	215, 840
PshBI	ATTAAT	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	69, 866
PspPI	GGNCC	2 cut(s)	775, 985
PstNI	CAGNNNCTG	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	808
RsaI	GTAC	6 cut(s)	140, 198, 386, 686, 824, 878
RsaNI	GTAC	6 cut(s)	139, 197, 385, 685, 823, 877
RseI	CAYNNNNRTG	1 cut(s)	862
SaqAI	TTAA	3 cut(s)	77, 308, 594
SatI	GCNGC	2 cut(s)	264, 297
Sau3AI	GATC	2 cut(s)	808, 841
Sau96I	GGNCC	2 cut(s)	775, 985
SchI	GAGTC	2 cut(s)	215, 840
ScrFI	CCNGG	3 cut(s)	191, 615, 616
SetI	ASST	9 cut(s)	98, 129, 180, 186, 392, 575, 639, 745, 1023
SfaNI	GCATC	3 cut(s)	199, 275, 980
SmaI	CCCGGG	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	862
Sse9I	AATT	9 cut(s)	289, 321, 447, 511, 709, 729, 761, 830, 1006
SsiI	CCGC	2 cut(s)	521, 697
SspMI	CTAG	3 cut(s)	471, 645, 1036
StyD4I	CCNGG	3 cut(s)	189, 613, 614
TaaI	ACNGT	4 cut(s)	204, 506, 665, 689
TaqI	TCGA	2 cut(s)	844, 942
TasI	AATT	9 cut(s)	289, 321, 447, 511, 709, 729, 761, 830, 1006
TatI	WGTACW	5 cut(s)	138, 196, 384, 822, 876
TfiI	GAWTC	3 cut(s)	303, 416, 555
Tru1I	TTAA	3 cut(s)	77, 308, 594
Tru9I	TTAA	3 cut(s)	77, 308, 594
TscAI	CASTG	2 cut(s)	209, 668
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	2 cut(s)	263, 296
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	5 cut(s)	504, 713, 753, 815, 1000
TspGWI	ACGGA	2 cut(s)	38, 437
TspMI	CCCGGG	1 cut(s)	614
TspRI	CASTG	2 cut(s)	209, 668
Van91I	CCANNNNNTGG	2 cut(s)	162, 588
VspI	ATTAAT	1 cut(s)	77
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	6 cut(s)	289, 321, 511, 761, 830, 1006
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	1 cut(s)	546
XmaI	CCCGGG	1 cut(s)	614
XmnI	GAANNNNTTC	3 cut(s)	456, 720, 938
XspI	CTAG	3 cut(s)	471, 645, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.