Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000363.1

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

161824 .. 165491

Gene Structure 3668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000363.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgggttctctcagaaatgaaccaggcagagatgacaaggaggaggaggcagaggagcccattttagcagagcaaacccagagattctgtatgtttcccattcggtatcagcaactttgggagatgtacaagaaggctatggctagtttctggactgctgaggaggttgatctctcccaggatgtacagcagtgggaggctctgactgactccgagaaacactttataagccatgtcctggcattttttgccgcatcagatgggattgttttggagaatttggctgcaagatttctaaatgatgttcaaattccagaggctcgggcattctatggatttcagcttgcaatggagaatattcattctgagatgtacagcttgcttttagagacatacatcaaggatcctaaagagaagcacagattgttcaatgcaattgaaaacattccttgtgtctctaggaaggccaagtgggctgtacattggataaacagttcaaattcgtttgcggagagacttgttgctttcgcatgtgttgaaggaatcttcttctctggaagcttctgtgccatattctggcttaaaaagaggggactaatgccaggtttgacattctcaaatgagcttatttctagagatgagggcctccactgtgattttgcttgccttctgtacagtttgttacagaagcaacttaatccggaaaaagttcatggaattatacatgaagctgtcgaaattgagaccgagtttgtttgtgatgccctcccatgtgcattgattggcatgaactcagctctcatgagccagtacataaaatttgttgccgatcgactcttggttgcattaggttatgagaagaagtacaatgtggaaaatccttttgattggatggagttcatttctttacaagggaagacaaatttctttgagaaaagggtgggggactatcaaaaagcatctgttatgtcgagcctccaagatggtggaaagaatttcgtcttcaacatggatgaggacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

341

Amino Acids

39.31

Weight (kDa)

4.96

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB7I	CCANNNNNTGG	2 cut(s)	238, 576
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	2 cut(s)	252, 509
AclWI	GGATC	2 cut(s)	398, 411
AcsI	RAATTY	6 cut(s)	277, 309, 499, 818, 922, 994
AfaI	GTAC	7 cut(s)	128, 186, 374, 480, 674, 812, 866
AfiI	CCNNNNNNNGG	2 cut(s)	238, 576
AgsI	TTSAA	6 cut(s)	308, 430, 440, 498, 539, 1006
AjnI	CCWGG	4 cut(s)	22, 177, 237, 601
AloI	GAACNNNNNNTCC	2 cut(s)	478, 510
AluBI	AGCT	6 cut(s)	343, 378, 561, 625, 731, 797
AluI	AGCT	6 cut(s)	343, 378, 561, 625, 731, 797
Alw26I	GTCTC	4 cut(s)	383, 460, 508, 737
AlwI	GGATC	2 cut(s)	398, 411
Ama87I	CYCGRG	1 cut(s)	321
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	2 cut(s)	465, 643
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	6 cut(s)	277, 309, 499, 818, 922, 994
Asp700I	GAANNNNTTC	2 cut(s)	444, 708
AspS9I	GGNCC	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	2 cut(s)	923, 994
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	3 cut(s)	254, 886, 977
BciT130I	CCWGG	4 cut(s)	24, 179, 239, 603
BcoDI	GTCTC	4 cut(s)	383, 460, 508, 737
BfaI	CTAG	3 cut(s)	144, 459, 633
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	2 cut(s)	252, 285
BlsI	GCNGC	2 cut(s)	253, 286
Bme1390I	CCNGG	4 cut(s)	24, 179, 239, 603
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	2 cut(s)	57, 405
BmrFI	CCNGG	4 cut(s)	24, 179, 239, 603
BmsI	GCATC	3 cut(s)	263, 751, 968
BpiI	GAAGAC	2 cut(s)	923, 994
Bpu10I	CCTNAGC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 576
Bse1I	ACTGG	1 cut(s)	808
Bse3DI	GCAATG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	700
BseBI	CCWGG	4 cut(s)	24, 179, 239, 603
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	187, 897, 1018
BseLI	CCNNNNNNNGG	2 cut(s)	238, 576
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	25, 150, 357, 807
BseNI	ACTGG	1 cut(s)	808
BseRI	GAGGAG	4 cut(s)	56, 59, 68, 176
BseXI	GCAGC	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	832
BshFI	GGCC	2 cut(s)	467, 645
BsiEI	CGRYCG	1 cut(s)	832
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	606, 959
BslI	CCNNNNNNNGG	2 cut(s)	238, 576
BsmAI	GTCTC	4 cut(s)	383, 460, 508, 737
BsmFI	GGGAC	2 cut(s)	606, 959
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	467, 645
Bso31I	GGTCTC	1 cut(s)	737
BsoBI	CYCGRG	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	700
Bsp1407I	TGTACA	5 cut(s)	126, 184, 372, 478, 672
Bsp143I	GATC	3 cut(s)	169, 403, 829
BspACI	CCGC	2 cut(s)	252, 509
BspANI	GGCC	2 cut(s)	467, 645
BspCNI	CTCAG	4 cut(s)	24, 151, 358, 806
BspEI	TCCGGA	1 cut(s)	700
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	57, 405
BspPI	GGATC	2 cut(s)	398, 411
BspTNI	GGTCTC	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	5 cut(s)	126, 184, 372, 478, 672
BsrI	ACTGG	1 cut(s)	808
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	169, 403, 829
Bst2UI	CCWGG	4 cut(s)	24, 179, 239, 603
Bst4CI	ACNGT	3 cut(s)	494, 653, 677
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	5 cut(s)	126, 184, 372, 478, 672
BstC8I	GCNNGC	3 cut(s)	345, 380, 664
BstDEI	CTNAG	4 cut(s)	11, 159, 366, 793
BstF5I	GGATG	3 cut(s)	187, 897, 1018
BstKTI	GATC	3 cut(s)	172, 406, 832
BstMAI	GTCTC	4 cut(s)	383, 460, 508, 737
BstMBI	GATC	3 cut(s)	169, 403, 829
BstMCI	CGRYCG	1 cut(s)	832
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 473
BstNI	CCWGG	4 cut(s)	24, 179, 239, 603
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	4 cut(s)	22, 177, 237, 601
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	923, 994
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	467, 645
BtsCI	GGATG	3 cut(s)	187, 897, 1018
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	197, 649
Cac8I	GCNNGC	3 cut(s)	345, 380, 664
CciI	TCATGA	1 cut(s)	801
Cfr13I	GGNCC	1 cut(s)	643
Csp6I	GTAC	7 cut(s)	127, 185, 373, 479, 673, 811, 865
CviAII	CATG	8 cut(s)	233, 531, 713, 725, 771, 787, 802, 1009
CviQI	GTAC	7 cut(s)	127, 185, 373, 479, 673, 811, 865
DdeI	CTNAG	4 cut(s)	11, 159, 366, 793
DpnI	GATC	3 cut(s)	171, 405, 831
DpnII	GATC	3 cut(s)	169, 403, 829
Eco24I	GRGCYC	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	737
Eco88I	CYCGRG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	4 cut(s)	22, 177, 237, 601
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	8 cut(s)	236, 534, 716, 728, 774, 790, 805, 1012
FaqI	GGGAC	2 cut(s)	606, 959
FatI	CATG	8 cut(s)	232, 530, 712, 724, 770, 786, 801, 1008
Fnu4HI	GCNGC	2 cut(s)	252, 285
FokI	GGATG	2 cut(s)	194, 904
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	252, 285
FspBI	CTAG	3 cut(s)	144, 459, 633
GluI	GCNGC	2 cut(s)	252, 285
HaeIII	GGCC	2 cut(s)	467, 645
HapII	CCGG	1 cut(s)	701
Hin1II	CATG	8 cut(s)	236, 534, 716, 728, 774, 790, 805, 1012
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	4 cut(s)	84, 209, 543, 834
HpaII	CCGG	1 cut(s)	701
Hpy188I	TCNGA	5 cut(s)	14, 204, 214, 259, 367
Hpy188III	TCNNGA	6 cut(s)	151, 314, 555, 633, 701, 802
HpyAV	CCTTC	4 cut(s)	127, 457, 533, 677
HpyCH4III	ACNGT	3 cut(s)	494, 653, 677
HpyCH4V	TGCA	5 cut(s)	287, 347, 434, 776, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 473
HpyF3I	CTNAG	4 cut(s)	11, 159, 366, 793
Hsp92II	CATG	8 cut(s)	236, 534, 716, 728, 774, 790, 805, 1012
Kpn2I	TCCGGA	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	169, 403, 829
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	263, 751, 968
MaeI	CTAG	3 cut(s)	144, 459, 633
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	3 cut(s)	171, 405, 831
MboI	GATC	3 cut(s)	169, 403, 829
MboII	GAAGA	5 cut(s)	538, 541, 871, 928, 994
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	9 cut(s)	277, 309, 435, 499, 717, 738, 818, 922, 994
MlyI	GAGTC	2 cut(s)	203, 828
MroI	TCCGGA	1 cut(s)	700
MroXI	GAANNNNTTC	2 cut(s)	444, 708
MseI	TTAA	2 cut(s)	582, 696
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	4 cut(s)	24, 179, 239, 603
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	4 cut(s)	24, 179, 239, 603
MwoI	GCNNNNNNNGC	2 cut(s)	248, 473
NdeII	GATC	3 cut(s)	169, 403, 829
NlaIII	CATG	8 cut(s)	236, 534, 716, 728, 774, 790, 805, 1012
NlaIV	GGNNCC	2 cut(s)	57, 405
NspI	RCATGY	1 cut(s)	534
PagI	TCATGA	1 cut(s)	801
PctI	GAATGC	1 cut(s)	326
PdmI	GAANNNNTTC	2 cut(s)	444, 708
PfeI	GAWTC	2 cut(s)	84, 543
PflMI	CCANNNNNTGG	2 cut(s)	238, 576
PkrI	GCNGC	2 cut(s)	253, 286
Ple19I	CGATCG	1 cut(s)	832
PleI	GAGTC	2 cut(s)	203, 828
PpsI	GAGTC	2 cut(s)	203, 828
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	4 cut(s)	22, 177, 237, 601
PspGI	CCWGG	4 cut(s)	22, 177, 237, 601
PspN4I	GGNNCC	2 cut(s)	57, 405
PspPI	GGNCC	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	403
PvuI	CGATCG	1 cut(s)	832
RsaI	GTAC	7 cut(s)	128, 186, 374, 480, 674, 812, 866
RsaNI	GTAC	7 cut(s)	127, 185, 373, 479, 673, 811, 865
SaqAI	TTAA	2 cut(s)	582, 696
SatI	GCNGC	2 cut(s)	252, 285
Sau3AI	GATC	3 cut(s)	169, 403, 829
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	2 cut(s)	203, 828
ScrFI	CCNGG	4 cut(s)	24, 179, 239, 603
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	9 cut(s)	168, 345, 380, 563, 607, 627, 733, 799, 853
SfaNI	GCATC	3 cut(s)	263, 751, 968
Sse9I	AATT	9 cut(s)	277, 309, 435, 499, 717, 738, 818, 922, 994
SsiI	CCGC	2 cut(s)	252, 509
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	3 cut(s)	144, 459, 633
StyD4I	CCNGG	4 cut(s)	22, 177, 237, 601
TaaI	ACNGT	3 cut(s)	494, 653, 677
TaqI	TCGA	3 cut(s)	735, 832, 971
TaqII	GACCGA	1 cut(s)	761
TasI	AATT	9 cut(s)	277, 309, 435, 499, 717, 738, 818, 922, 994
TatI	WGTACW	7 cut(s)	126, 184, 372, 478, 672, 810, 864
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	84, 543
Tru1I	TTAA	2 cut(s)	582, 696
Tru9I	TTAA	2 cut(s)	582, 696
TscAI	CASTG	2 cut(s)	197, 656
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	6 cut(s)	33, 350, 701, 741, 803, 889
TspRI	CASTG	2 cut(s)	197, 656
Van91I	CCANNNNNTGG	2 cut(s)	238, 576
XapI	RAATTY	6 cut(s)	277, 309, 499, 818, 922, 994
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	1 cut(s)	534
XmnI	GAANNNNTTC	2 cut(s)	444, 708
XspI	CTAG	3 cut(s)	144, 459, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.