Rorug04G0154300

Ribonucleoside-diphosphate reductase small chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010822
Physical Location & Seq
Reverse (-)
27013072 .. 27015473
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0154300.1

Sequence Viewer

Length: 999 bp
ATGTCGTCGTCGTCGTCGTCAGACGAAGAGGGGCAGTGGGTCCCGCTAAGGAGTAGACCGGAGTTTTCGGACGTGATCCCGGTGGAGCAAGACGACGGGCCGAACCCGGTGGTTCCGATAACCTACAAGGAAGAGTTCCGAGAGACCATGGACTATTTCCGAGCCCTGTACAAAGCCGATGAGCGATCCCTTCGCGCCCTTAACCTCACTTCCGAGGCCATCCAATTCAACCCTGGAAACTACACTGTATGGCACTTTAGGCGCTTAGTACTTGAGGCACTCAATCATGATTTGCACGATGAACTTGCTCTGACTGAACACATTGCTCAAGGAAACTCCAAAAATTATCAGTTATGGCATCATAGGCGGTGGGTAGCTGAGAAATTGGGAACTAGTGCTACAACCGAGGAACTTAGGTTCACCAAGAACATACTCTCCATTGATGCTAAACATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGCACTTGGAGGGTGGGAAGACGAACTTGACTATTGTCATCAGCTCCTTGAAGAAGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATTACAAGATTCCTGGGAGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGCCATTGTTGCCCGCCCAGAGAATGAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTCATCTTGGGTAAACAATCCTCAAATTTCTTCAGTATGCTTGGAGATTTTAAATGCCAAAACCAACTGTGTCTTTGCTTTGAGCACACTTTTGGATCTTATCTCCCATGGTTTCCAACCAAGCCAAGAGTTCGCAGATGCTGTGGATGCTCTACGAATTTCTGACTCCGAACAAAGAGATTCTGATGTGGCAAAAGCTGCTTGTTTTGTCTTGGAATCTGTCGATCCATTAAGAGCTAACTATTGGCAGTGGTACAAGAACAAGCATTTCCAAAATGCTTAA

Protein Analysis

332

Amino Acids

38.61

Weight (kDa)

5.25

Isoelectric Point (pI)

54.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 65 - 93 1.1e-07 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 98 - 128 1e-08 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 136 - 165 2.2e-10 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 168 - 198 2.2e-07 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010822)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23580
fragaria_vesca FvH4_4g14370 FvH4_4g14370
malus_domestica MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis pycom13g15710 pycom16g15320
rosa_chinensis RchiOBHm_Chr4g0418551
rosa_laevigata RLG00000007854
rosa_multiflora Rmu_sc0000363.1_g000039
rosa_roxburghii Rroxscaffold_5G00361810
rosa_rugosa Rorug04G0154200 Rorug04G0154300
rosa_samantha Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana Rw4G018260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 687
AccI GTMKAC 1 cut(s) 55
AccII CGCG 1 cut(s) 195
AciI CCGC 3 cut(s) 44, 367, 661
AclWI GGATC 4 cut(s) 70, 180, 819, 935
AcsI RAATTY 2 cut(s) 741, 873
AcuI CTGAAG 3 cut(s) 470, 648, 732
AfaI GTAC 4 cut(s) 170, 270, 689, 971
AgsI TTSAA 2 cut(s) 229, 539
AhlI ACTAGT 1 cut(s) 392
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 232, 597
AloI GAACNNNNNNTCC 4 cut(s) 401, 419, 433, 451
AluBI AGCT 6 cut(s) 377, 532, 614, 678, 914, 953
AluI AGCT 6 cut(s) 377, 532, 614, 678, 914, 953
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 2 cut(s) 137, 471
AlwI GGATC 4 cut(s) 70, 180, 819, 935
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 3 cut(s) 98, 216, 604
ApeKI GCWGC 1 cut(s) 914
ApoI RAATTY 2 cut(s) 741, 873
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 2 cut(s) 197, 264
AspS9I GGNCC 2 cut(s) 40, 98
AsuC2I CCSGG 2 cut(s) 80, 107
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 513, 549
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 901
BccI CCATC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 2 cut(s) 234, 599
BcnI CCSGG 2 cut(s) 80, 107
BcoDI GTCTC 2 cut(s) 137, 471
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 1 cut(s) 915
BlsI GCNGC 1 cut(s) 916
BmcAI AGTACT 1 cut(s) 270
Bme1390I CCNGG 4 cut(s) 80, 107, 234, 599
Bme18I GGWCC 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 40, 98
BmiI GGNNCC 4 cut(s) 41, 42, 114, 689
BmrFI CCNGG 4 cut(s) 80, 107, 234, 599
BmsI GCATC 4 cut(s) 367, 433, 844, 853
BoxI GACNNNNGTC 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 513, 549
Bpu10I CCTNAGC 1 cut(s) 47
BpuEI CTTGAG 2 cut(s) 293, 312
BpuMI CCSGG 2 cut(s) 80, 107
BsaI GGTCTC 2 cut(s) 137, 471
BsaJI CCNNGG 6 cut(s) 147, 213, 232, 405, 598, 823
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 2 cut(s) 234, 599
BseDI CCNNGG 6 cut(s) 147, 213, 232, 405, 598, 823
BseGI GGATG 2 cut(s) 219, 868
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 901
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 100, 218, 606
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 3 cut(s) 59, 80, 107
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 137, 471
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 100, 218, 606
Bso31I GGTCTC 2 cut(s) 137, 471
Bsp1286I GDGCHC 2 cut(s) 166, 803
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 4 cut(s) 75, 185, 811, 940
Bsp19I CCATGG 2 cut(s) 147, 823
BspACI CCGC 3 cut(s) 44, 367, 661
BspANI GGCC 3 cut(s) 100, 218, 606
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 41, 42, 114, 689
BspPI GGATC 4 cut(s) 70, 180, 819, 935
BspT107I GGYRCC 1 cut(s) 687
BspTNI GGTCTC 2 cut(s) 137, 471
BsrDI GCAATG 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 168
BssECI CCNNGG 6 cut(s) 147, 213, 232, 405, 598, 823
BssMI GATC 4 cut(s) 75, 185, 811, 940
BssT1I CCWWGG 2 cut(s) 147, 823
Bst2UI CCWGG 2 cut(s) 234, 599
Bst4CI ACNGT 2 cut(s) 247, 785
Bst6I CTCTTC 2 cut(s) 21, 126
BstAPI GCANNNNNTGC 1 cut(s) 914
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 4 cut(s) 47, 265, 378, 413
BstDSI CCRYGG 2 cut(s) 147, 823
BstF5I GGATG 2 cut(s) 219, 868
BstFNI CGCG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 197, 264
BstKTI GATC 4 cut(s) 78, 188, 814, 943
BstMAI GTCTC 2 cut(s) 137, 471
BstMBI GATC 4 cut(s) 75, 185, 811, 940
BstMWI GCNNNNNNNGC 5 cut(s) 259, 364, 656, 863, 914
BstNI CCWGG 2 cut(s) 234, 599
BstPAI GACNNNNGTC 1 cut(s) 522
BstSCI CCNGG 4 cut(s) 78, 105, 232, 597
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 901
BstV2I GAAGAC 2 cut(s) 513, 549
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 3 cut(s) 100, 218, 606
BtgI CCRYGG 2 cut(s) 147, 823
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 219, 868
BtsI GCAGTG 3 cut(s) 41, 482, 971
BtsIMutI CAGTG 4 cut(s) 41, 243, 482, 971
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 857
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 197, 264
Cfr13I GGNCC 2 cut(s) 40, 98
Csp6I GTAC 4 cut(s) 169, 269, 688, 970
CviAII CATG 5 cut(s) 148, 287, 458, 681, 824
CviQI GTAC 4 cut(s) 169, 269, 688, 970
DdeI CTNAG 4 cut(s) 47, 265, 378, 413
DpnI GATC 4 cut(s) 77, 187, 813, 942
DpnII GATC 4 cut(s) 75, 185, 811, 940
DraI TTTAAA 1 cut(s) 768
Eam1104I CTCTTC 2 cut(s) 21, 126
EarI CTCTTC 2 cut(s) 21, 126
Eco130I CCWWGG 2 cut(s) 147, 823
Eco147I AGGCCT 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 166
Eco31I GGTCTC 2 cut(s) 137, 471
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 3 cut(s) 470, 648, 732
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 232, 597
EcoT14I CCWWGG 2 cut(s) 147, 823
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 147, 823
FaeI CATG 5 cut(s) 151, 290, 461, 684, 827
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 26
FatI CATG 5 cut(s) 147, 286, 457, 680, 823
FauI CCCGC 2 cut(s) 51, 668
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 915
FokI GGATG 2 cut(s) 206, 875
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 915
FspBI CTAG 1 cut(s) 393
GlaI GCGC 2 cut(s) 196, 263
GluI GCNGC 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 3 cut(s) 100, 218, 606
HapII CCGG 3 cut(s) 59, 80, 107
HhaI GCGC 2 cut(s) 197, 264
Hin1II CATG 5 cut(s) 151, 290, 461, 684, 827
Hin6I GCGC 2 cut(s) 195, 262
HinP1I GCGC 2 cut(s) 195, 262
HinfI GANTC 6 cut(s) 568, 594, 623, 881, 896, 932
HpaII CCGG 3 cut(s) 59, 80, 107
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 56, 420, 730
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 3 cut(s) 56, 420, 730
Hpy99I CGWCG 5 cut(s) 10, 13, 16, 19, 98
HpyAV CCTTC 2 cut(s) 200, 701
HpyCH4III ACNGT 2 cut(s) 247, 785
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 364, 656, 863, 914
HpyF3I CTNAG 4 cut(s) 47, 265, 378, 413
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 5 cut(s) 151, 290, 461, 684, 827
HspAI GCGC 2 cut(s) 195, 262
KflI GGGWCCC 1 cut(s) 40
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 4 cut(s) 75, 185, 811, 940
LmnI GCTCC 2 cut(s) 85, 537
Lsp1109I GCAGC 1 cut(s) 901
LweI GCATC 4 cut(s) 367, 433, 844, 853
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 72
MalI GATC 4 cut(s) 77, 187, 813, 942
MboI GATC 4 cut(s) 75, 185, 811, 940
MboII GAAGA 7 cut(s) 38, 143, 476, 518, 551, 554, 738
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 2 cut(s) 166, 803
MluCI AATT 7 cut(s) 224, 343, 383, 556, 715, 741, 873
MlyI GAGTC 2 cut(s) 632, 875
MmeI TCCRAC 1 cut(s) 856
MseI TTAA 6 cut(s) 201, 552, 645, 767, 947, 997
MslI CAYNNNNRTG 1 cut(s) 456
MspI CCGG 3 cut(s) 59, 80, 107
MspR9I CCNGG 4 cut(s) 80, 107, 234, 599
MvaI CCWGG 2 cut(s) 234, 599
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 5 cut(s) 259, 364, 656, 863, 914
NciI CCSGG 2 cut(s) 80, 107
NcoI CCATGG 2 cut(s) 147, 823
NdeII GATC 4 cut(s) 75, 185, 811, 940
NlaIII CATG 5 cut(s) 151, 290, 461, 684, 827
NlaIV GGNNCC 4 cut(s) 41, 42, 114, 689
PagI TCATGA 1 cut(s) 286
PceI AGGCCT 1 cut(s) 606
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 14
PfeI GAWTC 4 cut(s) 568, 594, 896, 932
PkrI GCNGC 1 cut(s) 916
PleI GAGTC 2 cut(s) 631, 875
PpsI GAGTC 2 cut(s) 631, 875
PpuMI RGGWCCY 1 cut(s) 40
PshAI GACNNNNGTC 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 232, 597
PspGI CCWGG 2 cut(s) 232, 597
PspN4I GGNNCC 4 cut(s) 41, 42, 114, 689
PspPI GGNCC 2 cut(s) 40, 98
PspPPI RGGWCCY 1 cut(s) 40
PsrI GAACNNNNNNTAC 2 cut(s) 382, 414
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 811
RsaI GTAC 4 cut(s) 170, 270, 689, 971
RsaNI GTAC 4 cut(s) 169, 269, 688, 970
RseI CAYNNNNRTG 1 cut(s) 456
SaqAI TTAA 6 cut(s) 201, 552, 645, 767, 947, 997
SatI GCNGC 1 cut(s) 915
Sau3AI GATC 4 cut(s) 75, 185, 811, 940
Sau96I GGNCC 2 cut(s) 40, 98
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 2 cut(s) 632, 875
ScrFI CCNGG 4 cut(s) 80, 107, 234, 599
SduI GDGCHC 2 cut(s) 166, 803
SfaNI GCATC 4 cut(s) 367, 433, 844, 853
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 272, 327
SmoI CTYRAG 2 cut(s) 272, 327
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 7 cut(s) 224, 343, 383, 556, 715, 741, 873
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 3 cut(s) 44, 367, 661
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 4 cut(s) 78, 105, 232, 597
StyI CCWWGG 2 cut(s) 147, 823
TaaI ACNGT 2 cut(s) 247, 785
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 694, 939
TasI AATT 7 cut(s) 224, 343, 383, 556, 715, 741, 873
TatI WGTACW 2 cut(s) 168, 268
TfiI GAWTC 4 cut(s) 568, 594, 896, 932
Tru1I TTAA 6 cut(s) 201, 552, 645, 767, 947, 997
Tru9I TTAA 6 cut(s) 201, 552, 645, 767, 947, 997
TscAI CASTG 4 cut(s) 41, 250, 482, 971
TseI GCWGC 1 cut(s) 914
TspDTI ATGAA 3 cut(s) 315, 687, 708
TspRI CASTG 4 cut(s) 41, 250, 482, 971
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 2 cut(s) 741, 873
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.