Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

11761462 .. 11765720

Gene Structure 4259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G149900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGTTCTCTGGAAAATGGGATAGAGGGAGCTACAAATGGCAGAAAAGAGCATGAAGAAGAAACAGAGCAAGAGCCAATATTAATGGAGCAATCTGAGAGGTTTTGTATGTTTCCTATTAGGTACAAGCAAGTCTGGGAGATGTACAAGAAGGCTATGGCCAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGATGCTTTGTCTGACTCCGAAAAGCACTTTGTAAGTCATGTCCTGGCATTTTTTGCCGCATCTGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAAACGATGTTCAGATTCCAGAGGCCCGGGCATTCTATGGATTTCAACTTGCAATGGAGAATATTCATTCTGAGATGTACAGCTTGCTTTTGGAGACATATATCAAGGATTCAATGGAGAAACATAGATTGTTCAATGCAATTGAAAGCATTCCTTGTGTCTCTAGGAAGGCTAAGTGGGCGTTGGATTGGATACACAGTTCCAATTCATTTGCAGAGAGACTTGTTGCTTTTGCATGTGTTGAAGGAATCTTCTTCTCCGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGCTTAATGCCAGGTTTGACATTCTCAAATGAGCTTATCTCCAGAGATGAGGGACTCCATTGTGATTTCGCCTGTCTTCTGTACAGTTTGTTACGGAAGCAATTACCTTGGCAAAAAGTTCATGTCATTGTACATGAAGCTGTCGAGATTGAGATCGAGTTTGTTTGTGAGGCCCTCCCATGTGCATTGATTGGCATGAACTCAGATCTCATGAGCCAGTACATAAAATTTGTTGCTGATCGACTCTTGGTTGCATTAGGGTACCAGAGGAAGTACAATGTGGAAAATCCTTTTGATTGGATGGAGTTTATTTCTTTGCAAGGAAAGACGAACTTTTTTGAGAGAAGGGTGGGTGACTATCAAAAAGCATCTGTTATGTCAGGCCTCCAAGATGGTGGAAAGAATTTCATCTTCAAGATGGACGCAGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

348

Amino Acids

40.05

Weight (kDa)

5.06

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	870
AccB1I	GGYRCC	1 cut(s)	870
AccB7I	CCANNNNNTGG	2 cut(s)	168, 594
AccIII	TCCGGA	1 cut(s)	572
AciI	CCGC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	3 cut(s)	295, 836, 1012
AfaI	GTAC	9 cut(s)	125, 146, 204, 392, 692, 741, 830, 872, 884
AfiI	CCNNNNNNNGG	2 cut(s)	168, 594
AgsI	TTSAA	6 cut(s)	359, 426, 448, 458, 557, 1024
AjnI	CCWGG	3 cut(s)	195, 255, 619
AloI	GAACNNNNNNTCC	2 cut(s)	496, 528
AluBI	AGCT	5 cut(s)	32, 396, 579, 643, 749
AluI	AGCT	5 cut(s)	32, 396, 579, 643, 749
Alw26I	GTCTC	3 cut(s)	401, 478, 526
Ama87I	CYCGRG	1 cut(s)	339
Aor13HI	TCCGGA	1 cut(s)	572
AoxI	GGCC	4 cut(s)	159, 336, 780, 991
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	3 cut(s)	295, 836, 1012
AseI	ATTAAT	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	462
Asp718I	GGTACC	1 cut(s)	870
AspS9I	GGNCC	2 cut(s)	337, 781
AsuC2I	CCSGG	2 cut(s)	340, 341
AsuHPI	GGTGA	1 cut(s)	974
AvaI	CYCGRG	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	677
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	4 cut(s)	272, 904, 995, 1021
BciT130I	CCWGG	3 cut(s)	197, 257, 621
BciVI	GTATCC	1 cut(s)	498
BcnI	CCSGG	2 cut(s)	340, 341
BcoDI	GTCTC	3 cut(s)	401, 478, 526
BfaI	CTAG	2 cut(s)	477, 1042
BfuI	GTATCC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	2 cut(s)	270, 303
BlsI	GCNGC	2 cut(s)	271, 304
Bme1390I	CCNGG	5 cut(s)	197, 257, 340, 341, 621
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	337, 781
BmiI	GGNNCC	1 cut(s)	872
BmrFI	CCNGG	5 cut(s)	197, 257, 340, 341, 621
BmsI	GCATC	3 cut(s)	205, 281, 986
BpiI	GAAGAC	1 cut(s)	677
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	1 cut(s)	177
BpuMI	CCSGG	2 cut(s)	340, 341
BsaBI	GATNNNNATC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	195, 339, 716
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 594
Bse1I	ACTGG	2 cut(s)	162, 826
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	761
BseAI	TCCGGA	1 cut(s)	572
BseBI	CCWGG	3 cut(s)	197, 257, 621
BseDI	CCNNGG	3 cut(s)	195, 339, 716
BseGI	GGATG	3 cut(s)	205, 220, 915
BseJI	GATNNNNATC	1 cut(s)	761
BseLI	CCNNNNNNNGG	2 cut(s)	168, 594
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	4 cut(s)	87, 168, 375, 825
BseNI	ACTGG	2 cut(s)	162, 826
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	4 cut(s)	161, 338, 782, 993
BshNI	GGYRCC	1 cut(s)	870
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	340, 573
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	2 cut(s)	168, 594
BsmAI	GTCTC	3 cut(s)	401, 478, 526
BsmFI	GGGAC	1 cut(s)	675
BsmI	GAATGC	2 cut(s)	344, 462
BsnI	GGCC	4 cut(s)	161, 338, 782, 993
BsoBI	CYCGRG	1 cut(s)	339
Bsp13I	TCCGGA	1 cut(s)	572
Bsp1407I	TGTACA	5 cut(s)	144, 202, 390, 690, 739
Bsp143I	GATC	4 cut(s)	187, 762, 814, 847
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	4 cut(s)	161, 338, 782, 993
BspCNI	CTCAG	4 cut(s)	88, 169, 376, 824
BspEI	TCCGGA	1 cut(s)	572
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	1 cut(s)	872
BspT107I	GGYRCC	1 cut(s)	870
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	5 cut(s)	144, 202, 390, 690, 739
BsrI	ACTGG	2 cut(s)	162, 826
BssECI	CCNNGG	3 cut(s)	195, 339, 716
BssMI	GATC	4 cut(s)	187, 762, 814, 847
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	3 cut(s)	197, 257, 621
Bst4CI	ACNGT	2 cut(s)	512, 695
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstAUI	TGTACA	5 cut(s)	144, 202, 390, 690, 739
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	5 cut(s)	96, 177, 384, 486, 811
BstF5I	GGATG	3 cut(s)	205, 220, 915
BstKTI	GATC	4 cut(s)	190, 765, 817, 850
BstMAI	GTCTC	3 cut(s)	401, 478, 526
BstMBI	GATC	4 cut(s)	187, 762, 814, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 491
BstNI	CCWGG	3 cut(s)	197, 257, 621
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	5 cut(s)	195, 255, 338, 339, 619
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	677
BstX2I	RGATCY	1 cut(s)	814
BstXI	CCANNNNNNTGG	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	4 cut(s)	161, 338, 782, 993
BtsCI	GGATG	3 cut(s)	205, 220, 915
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	398
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	2 cut(s)	337, 781
Cfr9I	CCCGGG	1 cut(s)	339
Csp6I	GTAC	9 cut(s)	124, 145, 203, 391, 691, 740, 829, 871, 883
CviAII	CATG	8 cut(s)	53, 251, 549, 731, 743, 789, 805, 820
CviQI	GTAC	9 cut(s)	124, 145, 203, 391, 691, 740, 829, 871, 883
DdeI	CTNAG	5 cut(s)	96, 177, 384, 486, 811
DpnI	GATC	4 cut(s)	189, 764, 816, 849
DpnII	GATC	4 cut(s)	187, 762, 814, 847
EaeI	YGGCCR	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	716
Eco147I	AGGCCT	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRII	CCWGG	3 cut(s)	195, 255, 619
EcoT14I	CCWWGG	1 cut(s)	716
ErhI	CCWWGG	1 cut(s)	716
FaeI	CATG	8 cut(s)	56, 254, 552, 734, 746, 792, 808, 823
FalI	AAGNNNNNCTT	6 cut(s)	451, 483, 596, 628, 926, 958
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	8 cut(s)	52, 250, 548, 730, 742, 788, 804, 819
Fnu4HI	GCNGC	2 cut(s)	270, 303
FokI	GGATG	3 cut(s)	212, 227, 922
Fsp4HI	GCNGC	2 cut(s)	270, 303
FspBI	CTAG	2 cut(s)	477, 1042
GluI	GCNGC	2 cut(s)	270, 303
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	4 cut(s)	161, 338, 782, 993
HapII	CCGG	2 cut(s)	340, 573
Hin1II	CATG	8 cut(s)	56, 254, 552, 734, 746, 792, 808, 823
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	6 cut(s)	227, 328, 422, 561, 663, 852
HpaII	CCGG	2 cut(s)	340, 573
HphI	GGTGA	1 cut(s)	974
Hpy188I	TCNGA	7 cut(s)	97, 226, 232, 277, 327, 385, 814
Hpy188III	TCNNGA	7 cut(s)	11, 332, 573, 651, 754, 820, 1024
HpyAV	CCTTC	4 cut(s)	145, 475, 551, 948
HpyCH4III	ACNGT	2 cut(s)	512, 695
HpyCH4V	TGCA	8 cut(s)	305, 365, 452, 527, 548, 794, 863, 928
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 491
HpyF3I	CTNAG	5 cut(s)	96, 177, 384, 486, 811
Hsp92II	CATG	8 cut(s)	56, 254, 552, 734, 746, 792, 808, 823
Kpn2I	TCCGGA	1 cut(s)	572
KpnI	GGTACC	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	187, 762, 814, 847
LmnI	GCTCC	2 cut(s)	29, 88
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	3 cut(s)	205, 281, 986
MaeI	CTAG	2 cut(s)	477, 1042
MaeIII	GTNAC	2 cut(s)	699, 962
MalI	GATC	4 cut(s)	189, 764, 816, 849
MboI	GATC	4 cut(s)	187, 762, 814, 847
MboII	GAAGA	6 cut(s)	68, 71, 556, 559, 677, 1012
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	1 cut(s)	814
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	6 cut(s)	295, 453, 517, 710, 836, 1012
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	3 cut(s)	221, 657, 846
MmeI	TCCRAC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	161
MroI	TCCGGA	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	3 cut(s)	83, 600, 614
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	2 cut(s)	340, 573
MspR9I	CCNGG	5 cut(s)	197, 257, 340, 341, 621
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	2 cut(s)	344, 462
MvaI	CCWGG	3 cut(s)	197, 257, 621
MwoI	GCNNNNNNNGC	2 cut(s)	266, 491
NciI	CCSGG	2 cut(s)	340, 341
NdeII	GATC	4 cut(s)	187, 762, 814, 847
NlaIII	CATG	8 cut(s)	56, 254, 552, 734, 746, 792, 808, 823
NlaIV	GGNNCC	1 cut(s)	872
NmuCI	GTSAC	1 cut(s)	962
NspI	RCATGY	1 cut(s)	552
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	1 cut(s)	993
PctI	GAATGC	2 cut(s)	344, 462
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	328, 422, 561
PflMI	CCANNNNNTGG	2 cut(s)	168, 594
PkrI	GCNGC	2 cut(s)	271, 304
PleI	GAGTC	3 cut(s)	221, 657, 846
PpsI	GAGTC	3 cut(s)	221, 657, 846
PshBI	ATTAAT	1 cut(s)	83
Psp6I	CCWGG	3 cut(s)	195, 255, 619
PspGI	CCWGG	3 cut(s)	195, 255, 619
PspN4I	GGNNCC	1 cut(s)	872
PspPI	GGNCC	2 cut(s)	337, 781
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	9 cut(s)	125, 146, 204, 392, 692, 741, 830, 872, 884
RsaNI	GTAC	9 cut(s)	124, 145, 203, 391, 691, 740, 829, 871, 883
SaqAI	TTAA	3 cut(s)	83, 600, 614
SatI	GCNGC	2 cut(s)	270, 303
Sau3AI	GATC	4 cut(s)	187, 762, 814, 847
Sau96I	GGNCC	2 cut(s)	337, 781
SchI	GAGTC	3 cut(s)	221, 657, 846
ScrFI	CCNGG	5 cut(s)	197, 257, 340, 341, 621
SfaNI	GCATC	3 cut(s)	205, 281, 986
SmaI	CCCGGG	1 cut(s)	341
SrfI	GCCCGGGC	1 cut(s)	341
Sse9I	AATT	6 cut(s)	295, 453, 517, 710, 836, 1012
SseBI	AGGCCT	1 cut(s)	993
SsiI	CCGC	1 cut(s)	270
SspI	AATATT	2 cut(s)	81, 376
SspMI	CTAG	2 cut(s)	477, 1042
StuI	AGGCCT	1 cut(s)	993
StyD4I	CCNGG	5 cut(s)	195, 255, 338, 339, 619
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	2 cut(s)	512, 695
TaqI	TCGA	3 cut(s)	753, 765, 850
TasI	AATT	6 cut(s)	295, 453, 517, 710, 836, 1012
TatI	WGTACW	7 cut(s)	144, 202, 390, 690, 739, 828, 882
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	328, 422, 561
Tru1I	TTAA	3 cut(s)	83, 600, 614
Tru9I	TTAA	3 cut(s)	83, 600, 614
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	962
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	962
TspDTI	ATGAA	7 cut(s)	69, 368, 510, 719, 759, 821, 1006
TspGWI	ACGGA	1 cut(s)	718
TspMI	CCCGGG	1 cut(s)	339
TspRI	CASTG	1 cut(s)	215
Van91I	CCANNNNNTGG	2 cut(s)	168, 594
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	3 cut(s)	295, 836, 1012
XceI	RCATGY	1 cut(s)	552
XmaI	CCCGGG	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	477, 1042

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.