Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Reverse (-)

44002696 .. 44006706

Gene Structure 4011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTTCTCTCAGAAATGAACCAGGCAGAGATGACAAGGAGGAGGAGGAGGCAGAGGAGCCCATTTTAGCAGAGCAAACCCAGAGATTCTGCATGTTTCCCATTAGGTATCAGCAACTTTGGGAGATGTACAAGAAGGCTATGGCTAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGACTGACTCCGAGAAACACTTTATAAGCCACGTCCTGGCATTTTTTGCCGCATCAGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAAATGATGTTCAAATTCCAGAGGCTCGGGCATTCTATGGATTTCAGCTTGCAATGGAGAATATTCATTCTGAGATGTACAGCTTGCTTTTAGAGACATACATCAAGGATCCTAAGGAGAAGCACAGATTGTTCAATGCAATTGAAAACATTCCTTGTGTCTCTAGGAAGGCCAAGTGGGCTTTACATTGGATAAACAGTTCAAATTCGTTTGCAGAGAGACTTGTTGCTTTCGCATGTGTTGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCAGGTTTGACATTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTCCACTGTGATTTTGCTTGCCTTCTGTACAGTTTGTTACAGAAGCAACTTAATCCGGAGAAAGTTCATGGAATAATACGTGAAGCTGTCGAAATTGAGACCGAGTTTGTTTGTGATGCCCTCCCATGTGCATTGATTGGCATGAACTCAGCTCTCATGAGCCAGTACATAAAATTTGTTGCCGATCGACTCTTGGTTGCATTAGGTTATGAGAAGAAGTACAATGTGGAAAATCCTTTTGATTGGATGGAGTTCATTTCTTTACAAGGGAAGACAAATTTCTTTGAGAAAAGGGTGGGGGACTATCAAAAAGCATCTGTTATGTCGAGCCTCCAAGATGGTGGAAAGAATTTCGTCTTCAACATGGATGAGGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

342

Amino Acids

39.47

Weight (kDa)

4.92

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	29 - 295	1.5e-119	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccB7I	CCANNNNNTGG	2 cut(s)	241, 579
AccIII	TCCGGA	1 cut(s)	703
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	401, 414
AcsI	RAATTY	6 cut(s)	280, 312, 502, 821, 925, 997
AfaI	GTAC	6 cut(s)	131, 189, 377, 677, 815, 869
AfiI	CCNNNNNNNGG	2 cut(s)	241, 579
AgsI	TTSAA	6 cut(s)	311, 433, 443, 501, 542, 1009
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	4 cut(s)	22, 180, 240, 604
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	6 cut(s)	346, 381, 564, 628, 734, 800
AluI	AGCT	6 cut(s)	346, 381, 564, 628, 734, 800
Alw26I	GTCTC	4 cut(s)	386, 463, 511, 740
AlwI	GGATC	2 cut(s)	401, 414
Ama87I	CYCGRG	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	703
AoxI	GGCC	2 cut(s)	468, 646
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	6 cut(s)	280, 312, 502, 821, 925, 997
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	324
AxyI	CCTNAGG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	926, 997
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	3 cut(s)	257, 889, 980
BciT130I	CCWGG	4 cut(s)	24, 182, 242, 606
BcoDI	GTCTC	4 cut(s)	386, 463, 511, 740
BfaI	CTAG	3 cut(s)	147, 462, 636
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	2 cut(s)	255, 288
BlsI	GCNGC	2 cut(s)	256, 289
Bme1390I	CCNGG	4 cut(s)	24, 182, 242, 606
BmeT110I	CYCGRG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	60, 408
BmrFI	CCNGG	4 cut(s)	24, 182, 242, 606
BmsI	GCATC	3 cut(s)	266, 754, 971
BpiI	GAAGAC	2 cut(s)	926, 997
Bpu10I	CCTNAGC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 579
Bse1I	ACTGG	1 cut(s)	811
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	357
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	4 cut(s)	24, 182, 242, 606
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	190, 900, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	241, 579
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	25, 153, 360, 570, 810
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	5 cut(s)	56, 59, 62, 71, 179
BseXI	GCAGC	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	2 cut(s)	470, 648
BsiEI	CGRYCG	1 cut(s)	835
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	704
BslFI	GGGAC	2 cut(s)	609, 962
BslI	CCNNNNNNNGG	2 cut(s)	241, 579
BsmAI	GTCTC	4 cut(s)	386, 463, 511, 740
BsmFI	GGGAC	2 cut(s)	609, 962
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	470, 648
Bso31I	GGTCTC	1 cut(s)	740
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	703
Bsp1407I	TGTACA	4 cut(s)	129, 187, 375, 675
Bsp143I	GATC	3 cut(s)	172, 406, 832
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	470, 648
BspCNI	CTCAG	5 cut(s)	24, 154, 361, 569, 809
BspEI	TCCGGA	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	2 cut(s)	60, 408
BspPI	GGATC	2 cut(s)	401, 414
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	4 cut(s)	129, 187, 375, 675
BsrI	ACTGG	1 cut(s)	811
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	172, 406, 832
Bst2UI	CCWGG	4 cut(s)	24, 182, 242, 606
Bst4CI	ACNGT	3 cut(s)	497, 656, 680
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstAUI	TGTACA	4 cut(s)	129, 187, 375, 675
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	3 cut(s)	348, 383, 667
BstDEI	CTNAG	6 cut(s)	11, 162, 369, 411, 556, 796
BstF5I	GGATG	3 cut(s)	190, 900, 1021
BstKTI	GATC	3 cut(s)	175, 409, 835
BstMAI	GTCTC	4 cut(s)	386, 463, 511, 740
BstMBI	GATC	3 cut(s)	172, 406, 832
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 476
BstNI	CCWGG	4 cut(s)	24, 182, 242, 606
BstNSI	RCATGY	2 cut(s)	97, 537
BstSCI	CCNGG	4 cut(s)	22, 180, 240, 604
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	2 cut(s)	926, 997
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	989
BstYI	RGATCY	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	2 cut(s)	470, 648
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	190, 900, 1021
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	2 cut(s)	200, 652
Cac8I	GCNNGC	3 cut(s)	348, 383, 667
CciI	TCATGA	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	646
Csp6I	GTAC	6 cut(s)	130, 188, 376, 676, 814, 868
CviAII	CATG	7 cut(s)	94, 534, 716, 774, 790, 805, 1012
CviQI	GTAC	6 cut(s)	130, 188, 376, 676, 814, 868
DdeI	CTNAG	6 cut(s)	11, 162, 369, 411, 556, 796
DpnI	GATC	3 cut(s)	174, 408, 834
DpnII	GATC	3 cut(s)	172, 406, 832
Eco24I	GRGCYC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	740
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	4 cut(s)	22, 180, 240, 604
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	7 cut(s)	97, 537, 719, 777, 793, 808, 1015
FaqI	GGGAC	2 cut(s)	609, 962
FatI	CATG	7 cut(s)	93, 533, 715, 773, 789, 804, 1011
Fnu4HI	GCNGC	2 cut(s)	255, 288
FokI	GGATG	2 cut(s)	197, 907
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	255, 288
FspBI	CTAG	3 cut(s)	147, 462, 636
GluI	GCNGC	2 cut(s)	255, 288
HaeIII	GGCC	2 cut(s)	470, 648
HapII	CCGG	1 cut(s)	704
Hin1II	CATG	7 cut(s)	97, 537, 719, 777, 793, 808, 1015
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	4 cut(s)	87, 212, 546, 837
HpaII	CCGG	1 cut(s)	704
Hpy188I	TCNGA	5 cut(s)	14, 207, 217, 262, 370
Hpy188III	TCNNGA	6 cut(s)	154, 317, 558, 636, 704, 805
HpyAV	CCTTC	4 cut(s)	130, 460, 536, 680
HpyCH4III	ACNGT	3 cut(s)	497, 656, 680
HpyCH4IV	ACGT	2 cut(s)	237, 727
HpyCH4V	TGCA	7 cut(s)	93, 290, 350, 437, 512, 779, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 476
HpyF3I	CTNAG	6 cut(s)	11, 162, 369, 411, 556, 796
HpySE526I	ACGT	2 cut(s)	237, 727
Hsp92II	CATG	7 cut(s)	97, 537, 719, 777, 793, 808, 1015
Kpn2I	TCCGGA	1 cut(s)	703
Kzo9I	GATC	3 cut(s)	172, 406, 832
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	3 cut(s)	266, 754, 971
MaeI	CTAG	3 cut(s)	147, 462, 636
MaeII	ACGT	2 cut(s)	237, 727
MaeIII	GTNAC	1 cut(s)	684
MalI	GATC	3 cut(s)	174, 408, 834
MboI	GATC	3 cut(s)	172, 406, 832
MboII	GAAGA	5 cut(s)	541, 544, 874, 931, 997
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	8 cut(s)	280, 312, 438, 502, 741, 821, 925, 997
MlyI	GAGTC	2 cut(s)	206, 831
MroI	TCCGGA	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	2 cut(s)	585, 699
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	4 cut(s)	24, 182, 242, 606
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	4 cut(s)	24, 182, 242, 606
MwoI	GCNNNNNNNGC	2 cut(s)	251, 476
NdeII	GATC	3 cut(s)	172, 406, 832
NlaIII	CATG	7 cut(s)	97, 537, 719, 777, 793, 808, 1015
NlaIV	GGNNCC	2 cut(s)	60, 408
NspI	RCATGY	2 cut(s)	97, 537
PagI	TCATGA	1 cut(s)	804
PctI	GAATGC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	87, 546
PflMI	CCANNNNNTGG	2 cut(s)	241, 579
PkrI	GCNGC	2 cut(s)	256, 289
Ple19I	CGATCG	1 cut(s)	835
PleI	GAGTC	2 cut(s)	206, 831
PpsI	GAGTC	2 cut(s)	206, 831
Ppu21I	YACGTR	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	230
Psp6I	CCWGG	4 cut(s)	22, 180, 240, 604
PspGI	CCWGG	4 cut(s)	22, 180, 240, 604
PspN4I	GGNNCC	2 cut(s)	60, 408
PspPI	GGNCC	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	406
PvuI	CGATCG	1 cut(s)	835
RsaI	GTAC	6 cut(s)	131, 189, 377, 677, 815, 869
RsaNI	GTAC	6 cut(s)	130, 188, 376, 676, 814, 868
SaqAI	TTAA	2 cut(s)	585, 699
SatI	GCNGC	2 cut(s)	255, 288
Sau3AI	GATC	3 cut(s)	172, 406, 832
Sau96I	GGNCC	1 cut(s)	646
SchI	GAGTC	2 cut(s)	206, 831
ScrFI	CCNGG	4 cut(s)	24, 182, 242, 606
SduI	GDGCHC	1 cut(s)	63
SfaNI	GCATC	3 cut(s)	266, 754, 971
Sse9I	AATT	8 cut(s)	280, 312, 438, 502, 741, 821, 925, 997
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	3 cut(s)	147, 462, 636
StyD4I	CCNGG	4 cut(s)	22, 180, 240, 604
TaaI	ACNGT	3 cut(s)	497, 656, 680
TaiI	ACGT	2 cut(s)	240, 730
TaqI	TCGA	3 cut(s)	738, 835, 974
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	8 cut(s)	280, 312, 438, 502, 741, 821, 925, 997
TatI	WGTACW	6 cut(s)	129, 187, 375, 675, 813, 867
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	87, 546
Tru1I	TTAA	2 cut(s)	585, 699
Tru9I	TTAA	2 cut(s)	585, 699
TscAI	CASTG	2 cut(s)	200, 659
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	33, 353, 704, 806, 892
TspRI	CASTG	2 cut(s)	200, 659
Van91I	CCANNNNNTGG	2 cut(s)	241, 579
XapI	RAATTY	6 cut(s)	280, 312, 502, 821, 925, 997
XbaI	TCTAGA	1 cut(s)	635
XceI	RCATGY	2 cut(s)	97, 537
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	3 cut(s)	147, 462, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.