Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

22033070 .. 22036684

Gene Structure 3615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGTTCTCTCAGAAATGAACCAGGCAGAGATGACAAGGAGGAGGAGGGGGAGGAGGAAGAGCCCATTTTAGCAGAGCAAACCCAGAGATTCTGTATGTTTCCCATTCGGTATCAGCAACTTTGGGAGATGTACAAGAAGGCTATGGCTAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCAGGATGTACAGCAGTGGGAGGCTCTGACTGACTCTGAGAAACACTTTATAAGCCATGTCCTGGCATTTTTTGCGGCATCAGATGGGATCGTTTTGGAGAATTTGGCTGCAAGATTTCTAAATGATGTTCAAATTCCAGAGGCTCGGGCATTCTATGGATTTCAGCTTGCAATGGAGAATATTCATTCTGAGATGTACAGCTTGCTTTTAGAGACATACATCAAGGATCCTAAAGAGAAGCACAGATTGTTCAATGCAATTGAAAACATTCCTTGTGTCTCTAGGAAGGCCAAGTGGGCTTTGCATTGGATAAACAGTTCAAATTCGTTTGCAGAGAGACTTGTGGCTTTCGCATGTGTTGAAGGAATCTTCTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCAGGTTTGACATTCTCAAATGAGCTTATTTCTAGAGATGAGGGCCTCCATTGTGATTTTGCTTGCCTTCTGTACAGTTTGTTACAGAAGCAACTTAATCCGGAAAAAGTTCATGGAATTATACATGAAGCTGTCGAAATTGAGACCGAGTTTGTTTGTGATGCCCTCCCATGTGCATTGATTGGCATGAACTCAGCTCTCATGAGCCAGTACATAAAATTTGTTGCCGATCGACTCTTGGTTGCATTAGGTTATGAGAAGAAGTACAATGTGGAAAATCCTTTTGATTGGATGGAGTTCATTTCTTTACAAGGGAAGACAAATTTCTTTGAGAAAAGGGTGGGCGACTATCAAAAAGCATCTGTTATGTCGAGCCTCCAAGATGGTGGAAAGAATTTCGTCTTCAACATGGATGAGGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

344

Amino Acids

39.56

Weight (kDa)

4.89

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	30 - 296	3.1e-119	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AccB7I	CCANNNNNTGG	2 cut(s)	244, 582
AccIII	TCCGGA	1 cut(s)	706
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	278, 404, 417
AcsI	RAATTY	6 cut(s)	283, 315, 505, 824, 928, 1000
AfaI	GTAC	6 cut(s)	134, 192, 380, 680, 818, 872
AfiI	CCNNNNNNNGG	2 cut(s)	244, 582
AgsI	TTSAA	6 cut(s)	314, 436, 446, 504, 545, 1012
AjnI	CCWGG	4 cut(s)	22, 183, 243, 607
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	6 cut(s)	349, 384, 567, 631, 737, 803
AluI	AGCT	6 cut(s)	349, 384, 567, 631, 737, 803
Alw26I	GTCTC	4 cut(s)	389, 466, 514, 743
AlwI	GGATC	3 cut(s)	278, 404, 417
Ama87I	CYCGRG	1 cut(s)	327
Aor13HI	TCCGGA	1 cut(s)	706
AoxI	GGCC	2 cut(s)	471, 649
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	6 cut(s)	283, 315, 505, 824, 928, 1000
Asp700I	GAANNNNTTC	2 cut(s)	450, 714
AspS9I	GGNCC	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	327
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	929, 1000
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	3 cut(s)	260, 892, 983
BciT130I	CCWGG	4 cut(s)	24, 185, 245, 609
BcoDI	GTCTC	4 cut(s)	389, 466, 514, 743
BfaI	CTAG	4 cut(s)	150, 465, 639, 1030
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	2 cut(s)	258, 291
BlsI	GCNGC	2 cut(s)	259, 292
Bme1390I	CCNGG	4 cut(s)	24, 185, 245, 609
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	4 cut(s)	24, 185, 245, 609
BmsI	GCATC	3 cut(s)	269, 757, 974
BpiI	GAAGAC	2 cut(s)	929, 1000
Bpu10I	CCTNAGC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 582
Bse1I	ACTGG	1 cut(s)	814
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	706
BseBI	CCWGG	4 cut(s)	24, 185, 245, 609
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	193, 903, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	244, 582
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	6 cut(s)	25, 156, 210, 363, 573, 813
BseNI	ACTGG	1 cut(s)	814
BseRI	GAGGAG	4 cut(s)	56, 59, 68, 182
BseXI	GCAGC	1 cut(s)	277
Bsh1285I	CGRYCG	1 cut(s)	838
BshFI	GGCC	2 cut(s)	473, 651
BsiEI	CGRYCG	1 cut(s)	838
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	244, 582
BsmAI	GTCTC	4 cut(s)	389, 466, 514, 743
BsmFI	GGGAC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	473, 651
Bso31I	GGTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	706
Bsp1407I	TGTACA	4 cut(s)	132, 190, 378, 678
Bsp143I	GATC	4 cut(s)	175, 270, 409, 835
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	473, 651
BspCNI	CTCAG	6 cut(s)	24, 157, 211, 364, 572, 812
BspEI	TCCGGA	1 cut(s)	706
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	278, 404, 417
BspQI	GCTCTTC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	360
BsrGI	TGTACA	4 cut(s)	132, 190, 378, 678
BsrI	ACTGG	1 cut(s)	814
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	175, 270, 409, 835
Bst2UI	CCWGG	4 cut(s)	24, 185, 245, 609
Bst4CI	ACNGT	2 cut(s)	500, 683
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	4 cut(s)	132, 190, 378, 678
BstC8I	GCNNGC	3 cut(s)	351, 386, 670
BstDEI	CTNAG	6 cut(s)	11, 165, 219, 372, 559, 799
BstF5I	GGATG	3 cut(s)	193, 903, 1024
BstKTI	GATC	4 cut(s)	178, 273, 412, 838
BstMAI	GTCTC	4 cut(s)	389, 466, 514, 743
BstMBI	GATC	4 cut(s)	175, 270, 409, 835
BstMCI	CGRYCG	1 cut(s)	838
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 479
BstNI	CCWGG	4 cut(s)	24, 185, 245, 609
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	4 cut(s)	22, 183, 243, 607
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	929, 1000
BstX2I	RGATCY	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	473, 651
BtsCI	GGATG	3 cut(s)	193, 903, 1024
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	351, 386, 670
CciI	TCATGA	1 cut(s)	807
Cfr13I	GGNCC	1 cut(s)	649
Csp6I	GTAC	6 cut(s)	133, 191, 379, 679, 817, 871
CviAII	CATG	8 cut(s)	239, 537, 719, 731, 777, 793, 808, 1015
CviQI	GTAC	6 cut(s)	133, 191, 379, 679, 817, 871
DdeI	CTNAG	6 cut(s)	11, 165, 219, 372, 559, 799
DpnI	GATC	4 cut(s)	177, 272, 411, 837
DpnII	GATC	4 cut(s)	175, 270, 409, 835
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	743
Eco88I	CYCGRG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRII	CCWGG	4 cut(s)	22, 183, 243, 607
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	8 cut(s)	242, 540, 722, 734, 780, 796, 811, 1018
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	8 cut(s)	238, 536, 718, 730, 776, 792, 807, 1014
Fnu4HI	GCNGC	2 cut(s)	258, 291
FokI	GGATG	2 cut(s)	200, 910
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	258, 291
FspBI	CTAG	4 cut(s)	150, 465, 639, 1030
GluI	GCNGC	2 cut(s)	258, 291
HaeIII	GGCC	2 cut(s)	473, 651
HapII	CCGG	1 cut(s)	707
Hin1II	CATG	8 cut(s)	242, 540, 722, 734, 780, 796, 811, 1018
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	4 cut(s)	90, 215, 549, 840
HpaII	CCGG	1 cut(s)	707
Hpy188I	TCNGA	5 cut(s)	14, 210, 220, 265, 373
Hpy188III	TCNNGA	6 cut(s)	157, 320, 561, 639, 707, 808
HpyAV	CCTTC	4 cut(s)	133, 463, 539, 683
HpyCH4III	ACNGT	2 cut(s)	500, 683
HpyCH4V	TGCA	7 cut(s)	293, 353, 440, 487, 515, 782, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 479
HpyF3I	CTNAG	6 cut(s)	11, 165, 219, 372, 559, 799
Hsp92II	CATG	8 cut(s)	242, 540, 722, 734, 780, 796, 811, 1018
Kpn2I	TCCGGA	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	175, 270, 409, 835
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	3 cut(s)	269, 757, 974
MaeI	CTAG	4 cut(s)	150, 465, 639, 1030
MaeIII	GTNAC	1 cut(s)	687
MalI	GATC	4 cut(s)	177, 272, 411, 837
MboI	GATC	4 cut(s)	175, 270, 409, 835
MboII	GAAGA	6 cut(s)	71, 544, 547, 877, 934, 1000
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	9 cut(s)	283, 315, 441, 505, 723, 744, 824, 928, 1000
MlyI	GAGTC	2 cut(s)	209, 834
MroI	TCCGGA	1 cut(s)	706
MroXI	GAANNNNTTC	2 cut(s)	450, 714
MseI	TTAA	2 cut(s)	588, 702
MspI	CCGG	1 cut(s)	707
MspR9I	CCNGG	4 cut(s)	24, 185, 245, 609
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	4 cut(s)	24, 185, 245, 609
MwoI	GCNNNNNNNGC	2 cut(s)	254, 479
NdeII	GATC	4 cut(s)	175, 270, 409, 835
NlaIII	CATG	8 cut(s)	242, 540, 722, 734, 780, 796, 811, 1018
NlaIV	GGNNCC	1 cut(s)	411
NspI	RCATGY	1 cut(s)	540
PagI	TCATGA	1 cut(s)	807
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	2 cut(s)	450, 714
PfeI	GAWTC	2 cut(s)	90, 549
PflMI	CCANNNNNTGG	2 cut(s)	244, 582
PkrI	GCNGC	2 cut(s)	259, 292
Ple19I	CGATCG	1 cut(s)	838
PleI	GAGTC	2 cut(s)	209, 834
PpsI	GAGTC	2 cut(s)	209, 834
PsiI	TTATAA	1 cut(s)	233
Psp6I	CCWGG	4 cut(s)	22, 183, 243, 607
PspGI	CCWGG	4 cut(s)	22, 183, 243, 607
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	409
PvuI	CGATCG	1 cut(s)	838
RsaI	GTAC	6 cut(s)	134, 192, 380, 680, 818, 872
RsaNI	GTAC	6 cut(s)	133, 191, 379, 679, 817, 871
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	588, 702
SatI	GCNGC	2 cut(s)	258, 291
Sau3AI	GATC	4 cut(s)	175, 270, 409, 835
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	2 cut(s)	209, 834
ScrFI	CCNGG	4 cut(s)	24, 185, 245, 609
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	9 cut(s)	174, 351, 386, 569, 613, 633, 739, 805, 859
SfaNI	GCATC	3 cut(s)	269, 757, 974
Sse9I	AATT	9 cut(s)	283, 315, 441, 505, 723, 744, 824, 928, 1000
SsiI	CCGC	1 cut(s)	257
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	4 cut(s)	150, 465, 639, 1030
StyD4I	CCNGG	4 cut(s)	22, 183, 243, 607
TaaI	ACNGT	2 cut(s)	500, 683
TaqI	TCGA	3 cut(s)	741, 838, 977
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	9 cut(s)	283, 315, 441, 505, 723, 744, 824, 928, 1000
TatI	WGTACW	6 cut(s)	132, 190, 378, 678, 816, 870
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	90, 549
Tru1I	TTAA	2 cut(s)	588, 702
Tru9I	TTAA	2 cut(s)	588, 702
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	6 cut(s)	33, 356, 707, 747, 809, 895
TspRI	CASTG	1 cut(s)	203
Van91I	CCANNNNNTGG	2 cut(s)	244, 582
XapI	RAATTY	6 cut(s)	283, 315, 505, 824, 928, 1000
XbaI	TCTAGA	1 cut(s)	638
XceI	RCATGY	1 cut(s)	540
XmnI	GAANNNNTTC	2 cut(s)	450, 714
XspI	CTAG	4 cut(s)	150, 465, 639, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.